These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6982#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence [GAATCGCCCGAGTCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATCTCTGTGTGTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTGTCTAGTGGGGCCAGAAAAAAAAAGAAACG-GTGTAAG-CGC-TGTGATTAATT-GGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCGCAGTACATGAAACCCGGCCCGAATGGTCAATCACAGCACGCTGCGGCTGCGGCTGCGGCCGCTGCAGCCAGCTCCACCGTCCCGGACACGAACAACAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGCTATCTCAAGCACTACAACCGTTGGCAGCAGTCCGCCTGGGGCCGCACGCTCTCCGACCTGGTGAAGCGGTACCTCGGCTACGAGTTCGAAGACGAAGTCAAGTGGAACAATGTGTTCATGA-TCGGGATCTTTCACGTGATTGCGGTGTGGTCCTTTCTGCACTACGTATGGCAGGCCACACCGATCCCCTATCTCGGGGGTTCCTCCGTCNGCNNGCTGTGCCGGGGTNCGGGGGTGACCGGGCGGGCGTACCCCCGCCTTCTGGTTGCCCCCCCGGTTCGTTACCAGGGCGAAACCTGCCCGCTGGCGCCTTCCNTCCTGGATGGTGCNTG] [+] EMBL AL931526 [GAATCGCCCGAGTCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATCTCTGTGTGTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTGTCTAGTGGGGCCAGAAAAAAAAAGAAACG GTGTAAG CGC TGTGATTAATT GGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCGCAGTACATGAAACCCGGCCCGAATGGTCAATCACAGCACGCTGCGGCTGCGGCTGCGGCCGCTGCAGCCAGCTCCACCGTCCCGGACACGAACAACAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGCTATCTCAAGCACTACAACCGTTGGCAGCAGTCCGCCTGGGGCCGCACGCTCTCCGACCTGGTGAAGCGGTACCTCGGCTACGAGTTCGAAGACGAAGTCAAGTGGAACAATGTGTTCATGA TCGGGATCTTTCACGTGATTGCGGTGTGGTCCTTTCTGCACTACGTATGGCAGGCCACAC ] [+] EMBL BX624377 [ tgaggAGAAACGTGTGTAAGNCGCTTGTGATTAATTAGGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCCCAGTACATGAAACCCGGCCCGAATGGTCAATCACAGCAAGCGGCGGCGGCGGCTGCGGCCGCTGCAGCCAGCTCCACCGTCCCGGACACGAACAACAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGCTATCTCAAGCACTACAACCGTTGGCAGCAGTCGGCCTGGGGCCGCACGCTCTCCGACCTGGTGAAGCGGTACCTCGGCTACGAGTTCAAAGACGAAGTTCAGTGGNNCAATGTGTTCATGATTCGGGATC TTNACGTGATTGCGGTGTGGTCC TTCTGCACTACGTCTGGCCGGGCCCACCGATCCCCTATCTCGGGGGTTCCTCCGTCNGCNNGCTGTGCCGGGGTNCGGGGGTGACCGGGCGGGCGTACCCCCGCCTTCTGGTTGCCCCCCCGGTTCGTTACCAGGGCGAAACCTGCCCGCTGGCGCCTTCCNTCCTGGATGGTGCNTG] consensusID : consensus_6982#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [ATCGCCACGAGGTCTATCATACACAGCTACCTACTCCCGGTGGGTTTCNTTGGGGTGGGTTACAGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGTTTCTTTCCCGCAGTGGCAGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCAACAGCAAAAAGTGTCTTGCAAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATCTCTGTGTGTTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTGTCTAGTGGGGCCAGAAAAAAAAGAAACGGTGTAAGCGCTGTGATTAATTGGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCGCAGTACATGAAACCCGGCCGAATGGTCAATCACAGGCACGCTGCGGCTGCGGCTGCGGNCGCATGCAGCCAGGTCCACCGTCCCAGGACACGAACAANAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGGTATCTCAAGCACTAACAACCNGTTGGCAGCAGTCCGCACTGGGGCCGGAACGCNCTTCCGAGCCTGGT] [+] EMBL BX469530 [ATCGCCACGAGGTCTATCATACACAGCTACCTACTCCCGGTGGGTTTCNTTGGGGTGGGTTACAGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGTTTCTTTCCCGCAGTGGCAGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCAACAGCAAAAAGTGTCTTGCAAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATCTCTGTGTGTTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTGTCTAGTGGGGCCAGAAAAAAAAGAAACGGTGTAAGCGCTGTGATTAATTGGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCGCAGTACATGAAACCCGGCCGAATGGTCAATCACAGGCACGCTGCGGCTGCGGCTGCGGNCGCATGCAGCCAGGTCCACCGTCCCAGGACACGAACAANAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGGTATCTCAAGCACTAACAACCNGTTGGCAGCAGTCCGCACTGGGGCCGGAACGCNCTTCCGAGCCTGGT] consensusID : consensus_6982#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [GCAGAATCGCCCGAGGTTTAAGACAAGCAGACACAGCACGGAGCGTGTGCGCTTCTCCTAATCCGCCTGTTCAAATCGGTCGGTACATACTACGTCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTATGGGGTGGGTTACAGCCGGGCCTGCGGTATTCGGGAGCTGTGTANGTGTAAGCGGCAACGAAATCGATTGTTCTCTTTCCCGCAGTGGCCAGTTTCGCGTGGTTATTGGTGGAACAGGAGAAAGTTCCAAAACGCTTNTTCGAATCGTAACGGGCACAAACAGGAAAAAAGTGTCTTGCCNGATCTCGAAATACTTAAGCGAAACAGNNTTGGCAAATAGTGCAAGTGTATTACATCCCACGAGTGTAGTACTCGTGGTATCTCTGTGTGTTTAGTAGTATCGGTACGTGTGCTGTGTAGTAGTAGTAGTAGTGCAAGCTCGTATTGTAGAGTTCTGTCTAATGGGGCCAGAAAACACAANAGAAACGGTGTAAGCGCTGTGATTAATNGGGCAACATGACGGTGGGCATTACCAGCCACGCTACAGGTTCATACGCCGGCAATTCGGCGCAGACATGAAACCCGGCCGAATGGTCAATCACAGCACGCTGCGGCTGCGGCTGCGGCGCTGCA] [+] EMBL AL697601 [GCAGAATCGCCCGAGGTTTAAGACAAGCAGACACAGCACGGAGCGTGTGCGCTTCTCCTAATCCGCCTGTTCAAATCGGTCGGTACATACTACGTCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTATGGGGTGGGTTACAGCCGGGCCTGCGGTATTCGGGAGCTGTGTANGTGTAAGCGGCAACGAAATCGATTGTTCTCTTTCCCGCAGTGGCCAGTTTCGCGTGGTTATTGGTGGAACAGGAGAAAGTTCCAAAACGCTTNTTCGAATCGTAACGGGCACAAACAGGAAAAAAGTGTCTTGCCNGATCTCGAAATACTTAAGCGAAACAGNNTTGGCAAATAGTGCAAGTGTATTACATCCCACGAGTGTAGTACTCGTGGTATCTCTGTGTGTTTAGTAGTATCGGTACGTGTGCTGTGTAGTAGTAGTAGTAGTGCAAGCTCGTATTGTAGAGTTCTGTCTAATGGGGCCAGAAAACACAANAGAAACGGTGTAAGCGCTGTGATTAATNGGGCAACATGACGGTGGGCATTACCAGCCACGCTACAGGTTCATACGCCGGCAATTCGGCGCAGACATGAAACCCGGCCGAATGGTCAATCACAGCACGCTGCGGCTGCGGCTGCGGCGCTGCA] consensusID : consensus_6982#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 434 fasta sequence [CCGCGCGAGACAAGCAGACAACAGCACGGAGCGTGTGCGCTTCTCCTAA--CGCCTGTTCAAATCGGTCGG------TACGCCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTTGGGGAGGGTTACAGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGTTTCTTTCCCGCAGTGGCTGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCAACGGCAAAAAGGGTCTTGCAAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCGCGAGTGTTTAGTGCTCGTGTATCGCTGTGTGTTTGTGTATCGATACGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTG] [+] EMBL BM594362 [CCGCGCGAGACAAGCAGACAACAGCACGGAGCGTGTGCGCTTCTCCTAA CGCCTGTTCAAATCGGTCGG TACGCCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTTGGGGAGGGTTACAGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGTTTCTTTCCCGCAGTGGCTGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCAACGGCAAAAAGGGTCTTGCAAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCGCGAGTGTTTAGTGCTCGTGTATCGCTGTGTGTTTG ] [+] EMBL BX627993 [ TTCTCCTAATCCGCCTGTTCAAATCGGTCGGTACATCTACGCCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTTGGGGAGGGTTACCGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGCTTCTTTCCCGCAGTGGCAGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCGACAGCAAAAAGGGTCTTACTAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCGCGAGTGTGTAGTGCTCGTGTATCTCTGTGTGTTTGTGTATCGATACGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6982#2 ---------------------GCAGAATCGCCCGAGGTTTAAGACAAGCAGACA--CAGC 37 consensus_6982#3 ----------------------------------CCGCGCGAGACAAGCAGACAA-CAGC 25 consensus_6982#1 ------------------------------------------------------------ consensus_6982#0 GAATCGCCCGAGTCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATC 60 consensus_6982#2 ACGGAGCGT-GTGCGCTTCTCCTAATCCGCCTGTTCAAATCGGTCGGTACATACTACGTC 96 consensus_6982#3 ACGGAGCGT-GTGCGCTTCTCCTAA--CGCCTGTTCAAATCGGTCGGTAC-------GCC 75 consensus_6982#1 ------------------------------------------------------------ consensus_6982#0 TCTGTGTGTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGT---ATGTA 117 consensus_6982#2 GGGCACATCCTACACTTCCTTCATACACA-GCTACCCTACTCCCGGTGGGTTTCTATGGG 155 consensus_6982#3 GGGCACATCCTACACTTCCTTCATACACA-GCTACCCTACTCCCGGTGGGTTTCT-TGGG 133 consensus_6982#1 ----ATCGCCACGAGGTCTATCATACACA-GCTACC-TACTCCCGGTGGGTTTCNTTGGG 54 consensus_6982#0 GAGTTTGTCTAGTGGGGCCAGAAAAAAAAAGAAACGGTGTAAGCGCTGTGATTAATTGGG 177 * * * * * * * ** * ** ** * ** **** consensus_6982#2 GTGGGTTACAGCCGGGCCTGC-GGTATTCGGGAGCTGTGTANGTGTAAGCGGCAACGAAA 214 consensus_6982#3 GAGGGTTACAGC-GGGCCTGC-GGTATTCGGGAG-TGTGT-TGTGTAAGCGGCAA-GAAA 188 consensus_6982#1 GTGGGTTACAGC-GGGCCTGC-GGTATTCGGGAG-TGTGT-TGTGTAAGCGGCAA-GAAA 109 consensus_6982#0 CAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATT--CGGCGCAG 235 * ** * ** * * * * * ** * * ** * * * consensus_6982#2 TCGATTGTTCTCTTTCCCGCAGTGGCCAGTTTCGCGTGGTTATTGGTGGAACAGGAGAAA 274 consensus_6982#3 TCGATTGTT-TCTTTCCCGCAGTGGCT-GTTTCG-GTGGTT--TGGTGGAA--AGAGAAA 241 consensus_6982#1 TCGATTGTT-TCTTTCCCGCAGTGGCA-GTTTCG-GTGGTT--TGGTGGAA--AGAGAAA 162 consensus_6982#0 TACATGAAA-CCCGGCCCG-AATGGTCAATCACAGCACGCTG-CGGCTGCGGCTGCGGCC 292 * ** * **** * *** * * * * ** * * * consensus_6982#2 GTTCCAAAACGCTTNTTCGAATCGTA-ACGGGCACAAACAGGAAAAAAGT--GTCTTGC- 330 consensus_6982#3 GTTC--AAACGCTTTTTCGAATCGTA-ACGGGCC--AACGGCAAAAAGG---GTCTTGC- 292 consensus_6982#1 GTTC--AAACGCTTTTTCGAATCGTA-ACGGGCC--AACAGCAAAAAGT---GTCTTGC- 213 consensus_6982#0 GCTGCAGCCAGCTCCACCGTCCCGGACACGAACAACAACGAGATGGAGGACGATCGTACC 352 * * *** ** ** * *** * *** * * ** * * consensus_6982#2 ----------CNGATCTCGAAA--TA-CTTAAGCGAAACAGNNTTGGCAAATAGTGC--- 374 consensus_6982#3 ----------AAGATCTCGAAA--TA-CTTAAGCGAAACAGTT--GCCAAACAGTG---- 333 consensus_6982#1 ----------AAGATCTCGAAA--TA-CTTAAGCGAAACAGTT--GCCAAACAGTG---- 254 consensus_6982#0 GTAAGCGACAAGGATATCGACAGCTATCTCAAGCACTACAACCGTTGGCAGCAGTCCGCC 412 *** **** * ** ** **** *** * *** consensus_6982#2 AAGTGTATTACATCCCACGAGTG--TAGTACTCGTGGTATCTCTGTGTGTTTAGTAGTAT 432 consensus_6982#3 AAGTGTATTACATCCCGCGAGTGTTTAGTGCTCGTG-TATCGCTGTGTGTTTGT--GTAT 390 consensus_6982#1 AAGTGTATTACATCCCACGAGTG--TAGTACTCGTG-TATCTCTGTGTGTTTGT--GTAT 309 consensus_6982#0 TGGGGCCGCACGCTCTCCGACCTGGTGAAGCG-GTACCTCGGCTACGAGTTCGAAGACGA 471 * * ** * *** * * ** ** * *** consensus_6982#2 CGGTACGTGTGC---TGTGTA-GTAGTAGTAGTAGTGCAAGCTCGTATTGTAGAGTTCTG 488 consensus_6982#3 CGATACGTGTG----TGTGT--GTGT--------GTGCAAGCTCGTAT-GTAGAGTTTG- 434 consensus_6982#1 CGGTACGTGTG----TGTGT--GTGTGTGT----GTGCAAGCTCGTAT-GTAGAGTTTG- 357 consensus_6982#0 AGTCAAGTGGAACAATGTGTTCATGATCGGGATCTTTCACGTGATTGCGGTGTGGTCCTT 531 * * *** ***** * * ** * * ** ** consensus_6982#2 TCTAATGGGGCCAGAAAACACAANAGAAACGGTGTAAGCGCTGTGATTAATNGGGCAACA 548 consensus_6982#3 ------------------------------------------------------------ consensus_6982#1 TCTAGTGGGGCCAGAAAA---AAAAGAAACGGTGTAAGCGCTGTGATTAATTGGGCAACA 414 consensus_6982#0 TCTGCACTACGTATGGCAGGCCACACCGATCCCCTAT-CTCGGGGGTTCCTCCGTCNGCN 590 consensus_6982#2 TGACGGTGGGCATTACCAGCCACGCTACAGGTTCATACGCCGGCAATTCGGCGCAG-ACA 607 consensus_6982#3 ------------------------------------------------------------ consensus_6982#1 TGACGGTGGGCATTACCAGC-ACGCTACAG--TTCATCGCCGGCAATTCGGCGCAGTACA 471 consensus_6982#0 NGCTGTGCCGGGGTNCGGGGGTGACCGGGCGGGCGTACCCCCGCCTTCTGGTTGCCCCCC 650 consensus_6982#2 TGAAACCCGGCCGAATGGTCAATCACAG-CACGCTGCGGCTGCGGCTGCGGCGCTGCA-- 664 consensus_6982#3 ------------------------------------------------------------ consensus_6982#1 TGAAACCCGGCCGAATGGTCAATCACAGGCACGCTGCGGCTGCGGCTGCGGNCGCATGCA 531 consensus_6982#0 CGGTTCGTTACCAGGGCGAAACCTGCCCGCTGGCGCCTTCCNTCCTGGATGGTGCNTG-- 708 consensus_6982#2 ------------------------------------------------------------ consensus_6982#3 ------------------------------------------------------------ consensus_6982#1 GCCAGGTCCACCGTCCCAGGACACGAACAANAACGAGATGGAGGACGATCGTACCGTAAG 591 consensus_6982#0 ------------------------------------------------------------ consensus_6982#2 ------------------------------------------------------------ consensus_6982#3 ------------------------------------------------------------ consensus_6982#1 CGACAAGGATATCGACAGGTATCTCAAGCACTAACAACCNGTTGGCAGCAGTCCGCACTG 651 consensus_6982#0 ------------------------------------------------------------ consensus_6982#2 --------------------------- consensus_6982#3 --------------------------- consensus_6982#1 GGGCCGGAACGCNCTTCCGAGCCTGGT 678 consensus_6982#0 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||