These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 896 fasta sequence [CCGCCCACGCGTCCGAAATTGTTGTCTTATATTTACAAAGTTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGTCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGTGAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTTCCCTCTGCAAGAAACAGTAGAAAACACCCACTCTACCATGAGTTTTGGGATTTAGCTTTTCTTTAAGCTTTCTCTTTCCATTTTCAATGGCTTTTTCCTTGTGTTCAAGCATGTAAAGAAAACACAAGCTTAACTTTTTGTTACGTACGGCTGGCGCATTGTATAGGTTGTAAAGAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGAAACACAGGGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTACGGGCATACGGTTGGGGACAATGTGAAACAAGCAACGTGGAAAAGGAAGGATACGAACAGAGTCAGTAATAGCGGTATGGTAACGGAAGTAGTATGAAAAAAATGAAAAACAGGGAAACAGAGCGAAACAGAGCGAAACAGAGAAAGAAAGAAAAGANAACGGGTTTGCTGAGAGCGAAAAAAACATNAAAAATCGTGTCANTGAGATTANGAAGAAAAGCAAATCATCGGCACAACATCNGAGATAATTTTCTAT] [+] EMBL BM588889 [CCGCCCACGCGTCCGAAATTGTTGTCTTATATTTACAAAGTTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGTCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGTGAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTTCCCTCTGCAAGAAACAGTAGAAAACACCCACTCTACCATGAGTTTTGGGATTTAGCTTTTCTTTAAGCTTTCTCTTTCCATTTTCAATGGCTTTTTCCTTGTGTTCAAGCATGTAAAGAAAACACAAGCTTAACTTTTTGTTACGTACGGCTGGCGCATTGTATAGGTTGTAAAGAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGAAACACAGGGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTACGGGCATACGGTTGGGGACAATGTGAAACAAGCAACGTGGAAAA ] [+] EMBL BX616759 [ TCTCCTCCCTTTCCCTCTGCAAGAAACAGTAGAAAACACCCACTCTACCATGAGTTTTGGGATTTAGCTTTTCTTTAAGCTTTCTCTTTCCATTTTCAATGGCTTTTTCCTTGTGTTCAAGCATGTAAAGAAAACACAAGCTTAACTTTTTGTTACGTACGGCTGGCGCATTGTATAGGTTGTAAAGAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTT ] [+] EMBL BX625553 [ AGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGGAAAACA GGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTAC GGCATACGGTT GGGACAATGTGAAACAAGCAACGTGAAAATGGAAGGATACGAACAGAGTCAGTAATAGCGGTATGGTAACGGAAGTAGTATGAAAAAAATGAAAAACAGGGAAACAGAGCGAAACAGAGCGAAACAGAGAAAGAAAGAAAAGANAACGGGTTTGCTGAGAGCGAAAAAAACATNAAAAATCGTGTCANTGAGATTANGAAGAAAAGCAAATCATCGGCACAACATCNGAGATAATTTTCTAT] consensusID : consensus_6985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGTGCTTCCTTTTTGTGTTCACACTTTCATGTTCGTGCTCTCTTTCACTCTTTTCCTGTGTTTCATACTCTTTCTGGTATTCAATTTACTGTACTTGTTCGCTATTTTCTCTATCACGTTTCTGTCTCAACTGAGGAAGAGACTTCTGTTGTTCTCGTTCATCTTATTTTTCATTTGTTTTGTGACACTTATGGTTAGCTTTAGCAAGTAGAGATTTATTAAATACAGAGAGACCAGTTGAGATTGAGATTATAATACAGTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGCCTGACGAACACCGAGGAAAGACAAAACAAACATGACATCGATTTAAGCTAAATTGATGTCTTATATTTACAAAGGTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGGCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGCGAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTTCCCTCTGCAAGAAGCAGTAGAAAACACCCACTCTACCATGAGTTTTGG] [+] EMBL BM584412 [CCGTGCTTCCTTTTTGTGTTCACACTTTCATGTTCGTGCTCTCTTTCACTCTTTTCCTGTGTTTCATACTCTTTCTGGTATTCAATTTACTGTACTTGTTCGCTATTTTCTCTATCACGTTTCTGTCTCAACTGAGGAAGAGACTTCTGTTGTTCTCGTTCATCTTATTTTTCATTTGTTTTGTGACACTTATGGTTAGCTTTAGCAAGTAGAGATTTATTAAATACAGAGAGACCAGTTGAGATTGAGATTATAATACAGTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGCCTGACGAACACCGAGGAAAGACAAAACAAACATGACATCGATTTAAGCTAAATTGATGTCTTATATTTACAAAGGTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGGCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGCGAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTTCCCTCTGCAAGAAGCAGTAGAAAACACCCACTCTACCATGAGTTTTGG] consensusID : consensus_6985#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CAGAATCGGCACAGGGGCTGACGCATTGTATAGGTTGTAAAGCAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGGAAAACAGGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTACGGCATACGGTTGGGACAATGTGAAACAAGCAACGTGAAAATGGAAGGATACGAACAGAGTCAGTAATAGCGGTATGGTAACGGAAGTAGTATGAAAAAAATGAAAAACAGGGAAACAGAGCGAAACAGAGCGAAACAGAGAAAGAAAGAAAAGAAAACGGGTTTGCTGAGAGCGAAAAAAACATAAAAAATCGTGTCAGTGAGATTAAGAAGA] [+] EMBL BX466372 [CAGAATCGGCACAGGGGCTGACGCATTGTATAGGTTGTAAAGCAGCGAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATGATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTTCATTCCCCGGGAAAGGAAAGCAGATGGAAAACAGGGGTTACTACTGCTTCTATCACAGCATACCGTCTGCCGTCAGCCTCAGGCGTGTTGTTTAGACGGTACGGCATACGGTTGGGACAATGTGAAACAAGCAACGTGAAAATGGAAGGATACGAACAGAGTCAGTAATAGCGGTATGGTAACGGAAGTAGTATGAAAAAAATGAAAAACAGGGAAACAGAGCGAAACAGAGCGAAACAGAGAAAGAAAGAAAAGAAAACGGGTTTGCTGAGAGCGAAAAAAACATAAAAAATCGTGTCAGTGAGATTAAGAAGA] consensusID : consensus_6985#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CAACTGAATAAGAGACTTCTGTTATTATTTCTTTCATCTTATTTTTCTTTTGTTTTGTTACACTTAGGGTTAGCTTTAGCAAATAGAGATTTATTAAATACAGAGAGACCAATTGAGATTGAGATTATAATACAGTTTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGTCTGACGAACACCGTGGTAAGACAAAACAAACATGACATCGATTTAAGCTAAATTGTTGTCTTAAATTTACAAAGTGGAGCATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTTCGGGCCTTAAAACGTTTTTTTTTTTTTATGGAAGCGTTTCGCTTAANGGTGCAATATCGTTGAGANCAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCTCCTCTCCTCCCNTTTCCCTCTGCAAGAAAAAGTAGAAAACACCCACTC] [+] EMBL BX624335 [CAACTGAATAAGAGACTTCTGTTATTATTTCTTTCATCTTATTTTTCTTTTGTTTTGTTACACTTAGGGTTAGCTTTAGCAAATAGAGATTTATTAAATACAGAGAGACCAATTGAGATTGAGATTATAATACAGTTTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGTCTGACGAACACCGTGGTAAGACAAAACAAACATGACATCGATTTAAGCTAAATTGTTGTCTTAAATTTACAAAGTGGAGCATTCTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTTCGGGCCTTAAAACGTTTTTTTTTTTTTATGGAAGCGTTTCGCTTAANGGTGCAATATCGTTGAGANCAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCTCCTCTCCTCCCNTTTCCCTCTGCAAGAAAAAGTAGAAAACACCCACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6985#1 ------------------------------------------------------------ consensus_6985#3 ------------------------------------------------------------ consensus_6985#0 CCGCCCACGCGTCCGAAATTGTTGTCTTATATTTACAAAGTTGTTTGATCTTGTTTGATT 60 consensus_6985#2 ------------------------------------------------------------ consensus_6985#1 ------------------------------------------------------------ consensus_6985#3 ------------------------------------------------------------ consensus_6985#0 CTTGTTTGATTAAATCATTCCGTTTATTCCACTGCTGATTTCTTTTACTTCCCCATTTCC 120 consensus_6985#2 ------------------------------------------------------------ consensus_6985#1 ------------------------------------------------------------ consensus_6985#3 ------------------------------------------------------------ consensus_6985#0 GGGTCTTAAAACGTTTTTGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGT 180 consensus_6985#2 ------------------------------------------------------------ consensus_6985#1 ---------------------------------------------------CCGTGCTTC 9 consensus_6985#3 ------------------------------------------------------------ consensus_6985#0 GAGAACAGCGAATGGAAATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTT 240 consensus_6985#2 ------------------------------------------------------------ consensus_6985#1 CTTTTTGTGTTCACACTTTCATGTTCGTGCTCTCTTTCACTCTTTTCCTGTGTTTCATAC 69 consensus_6985#3 ------------------------------------------------------------ consensus_6985#0 CCCTCTGCAAGAAACAGTAGAAAACACCCACTCTACCATGAGTTTTGGGATTTAGCTTTT 300 consensus_6985#2 ------------------------------------------------------------ consensus_6985#1 TCTTTCTGGTATTCAATTTACTGTACTTGTTCGCTATTTTCTCTATCACGTTTCTGTCTC 129 consensus_6985#3 -----------------------------------------------------------C 1 consensus_6985#0 CTTTAAGCTTTCTCTTTCCATTTTCAATGGCTTTTTCCTTGTGTTCAAGCATGTAAAGAA 360 consensus_6985#2 ------------------------------------------------------------ consensus_6985#1 AACTGAGGAAGAGACTTCTGTTGT--TCTCGTTCATCTTATTTTTCATTTGTTTTGTGAC 187 consensus_6985#3 AACTGAATAAGAGACTTCTGTTATTATTTCTTTCATCTTATTTTTCTTTTGTTTTGTTAC 61 consensus_6985#0 AACACAAGCTTAACTTTTTGTTAC-GTACGGCTGGCGCATTGTATAGGTTGTAAAG-AGC 418 consensus_6985#2 --------CAGAA----TCGGCAC-A-GGGGCTGACGCATTGTATAGGTTGTAAAGCAGC 46 * * * * * * **** * * consensus_6985#1 ACTTATGGTTAGCTTTAGCAAGTAGAGATTT----ATTAAATACAGAGAGACCAGTTGAG 243 consensus_6985#3 ACTTAGGGTTAGCTTTAGCAAATAGAGATTT----ATTAAATACAGAGAGACCAATTGAG 117 consensus_6985#0 GAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATG 478 consensus_6985#2 GAGCAAGATTGTTTGTTGATGTTAATGTTTTTGGAAGCAAAAGCGACCAAACCCCGCATG 106 * * ** * * * ** * *** * *** * * *** * consensus_6985#1 ATTGAGATTATAA-TACAGTTTTTTT--CTTCTTTTTCTTTTTGTTATTATATCGCCTGA 300 consensus_6985#3 ATTGAGATTATAA-TACAGTTTTTTTTTCTTCTTTTTCTTTTTGTTATTATATCGTCTGA 176 consensus_6985#0 ATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTT 538 consensus_6985#2 ATAGGGATGGCAGCTTTTGTTTTGTTAGTTTGTTTGTTTGTTTGCTAATCGAATACATTT 166 ** * *** * * ***** ** ** *** * * **** ** * * * consensus_6985#1 CGAACACCGAGGAAAGACAAAACAAACATGACATCGATTTA-----AGCTAAATTGATGT 355 consensus_6985#3 CGAACACCGTGGTAAGACAAAACAAACATGACATCGATTTA-----AGCTAAATTGTTGT 231 consensus_6985#0 CATTCCCCGGGAAAGGAAAGCAGATGAAACACAGGGGGTTACTACTGCTTCTATCACAGC 598 consensus_6985#2 CATTCCCCGGGAAAGGAAAGCAGATGGAAAACAGGGG-TTACTACTGCTTCTATCACAGC 225 * * *** * * ** * * * * *** * *** * ** * consensus_6985#1 CTTATATTTACAAAGGTGTTTGATCTTGTTTGATTCTTGTTTGATTAAATCATTCCGTTT 415 consensus_6985#3 CTTAAATTTACAAAG----TGGAGC-------ATTCTTGTTTGATTAAATCATTCCGTTT 280 consensus_6985#0 ATACCGTCTGCCGTCAGCCTCAGGCGTGT----TGTTTAGACGGTACGGGCATACGGTTG 654 consensus_6985#2 ATACCGTCTGCCGTCAGCCTCAGGCGTGT----TGTTTAGACGGTACGG-CATACGGTTG 280 * * * * * * * ** * * *** * *** consensus_6985#1 ATTCCACTGCTGATTTCTTTTACTTCCCCATTTCCGGGGCTTAAAACGTTT--------T 467 consensus_6985#3 ATTCCACTGCTGATTTCTTTTACTTCCCCATTTTCGGGCCTTAAAACGTTT--------T 332 consensus_6985#0 GGGACAATG-TGAAACAAGCAACGTGGAAAAGGAAGGATACGAACAGAGTCAGTAATAGC 713 consensus_6985#2 GG-ACAATG-TGAAACAAGCAACGTGAAAATGGAAGGATACGAACAGAGTCAGTAATAGC 338 ** ** *** ** * * ** ** * * consensus_6985#1 TGTTTTTTTATGGAAGCGTTTCGCTTAATGGTGCAATATCGGCGAGAACAGCGAA-TGGA 526 consensus_6985#3 TTTTTTTTTATGGAAGCGTTTCGCTTAANGGTGCAATATCGTTGAGANCAGCGAA-TGGA 391 consensus_6985#0 GGTATGGTAACGGAAGTAGTATGAA-AAAAATGAAAAACAGGGAAACAGAGCGAAACAGA 772 consensus_6985#2 GGTATGGTAACGGAAGTAGTATGAA-AAAAATGAAAAACAGGGAAACAGAGCGAAACAGA 397 * * * * ***** * * ** ** ** * * * ****** ** consensus_6985#1 AATTTCTGTTGTAAGAAGTTTTTCCTTCCCCCTCTCCTCCCTTT-CCCTCTGCAAGAAGC 585 consensus_6985#3 AATTTCTGTTGTAAGAAGTTTTTCCTTCCTCCTCTCCTCCCNTTTCCCTCTGCAAGAAAA 451 consensus_6985#0 GCGAAACAGAGAAAGAAAGAAAAGANAACGGGTTTGCTGAGAGC-------GAAAAAAAC 825 consensus_6985#2 GCGAAACAGAGAAAGAAAGAAAAGAAAACGGGTTTGCTGAGAGC-------GAAAAAAAC 450 * ***** * * * ** * ** ** consensus_6985#1 AGTAGAAAACACCCACTCTACCATGAGTTTTGG--------------------------- 618 consensus_6985#3 AGTAGAAAACACCCACTC------------------------------------------ 469 consensus_6985#0 ATNAAAAATCGTGTCANTGAGATTANGAAGAAAAGCAAATCATCGGCACAACATCNGAGA 885 consensus_6985#2 ATAAAAAATCGTGTCAGTGAGATTAAGAAGA----------------------------- 481 * * *** * consensus_6985#1 ----------- consensus_6985#3 ----------- consensus_6985#0 TAATTTTCTAT 896 consensus_6985#2 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||