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Anopheles gambiae
cluster # 6994 cluster # 6994       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6994#0 length = 1023 sequences # 5  
consensus_6994#1 length = 728 sequences # 1  

consensusID : consensus_6994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1023
fasta sequence
                              [GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT-CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT-CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT-CCT-GCG-TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT-GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTCGCTTCAAT]

[+] EMBL CNS08ZXU             [GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCT GCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTACTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGTGGGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTG                                       ]
[+] EMBL CNS08GIJ             [            TTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCCCCCACAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CNS08ZXT             [                                                                                                                                                                                 TCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCTACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCTCGCG TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTCGCTTCAAT]
[-] EMBL CNS08OR8             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGTCCCTCATGCTCTTTTAGTCGTTCTCCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCCT GCG TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCGTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGTG TTCCGCTCGATCCGTTCGAATGCCCCCCCCCCCCCCCGTCCGACTCCGTGTGCCCATC                                                                                           ]
[-] EMBL CNS08GII             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         agGCACAGCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCT GGC TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGTGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTG GGGTGGCTTCAAT]


>consensus_6994#0 GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGG CCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACG ACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCG GATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACT TTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATA GATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTA TCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATT TGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGAT AAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGTT AGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTT TAGTCGGAACCGTTTTATCCTTCCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGC GTTTGGTCGGTTTCCTGCGTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTT GCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATC AATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAAT GTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAATGCGA GTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGTGGGGAAAGCAAATCATCCTG CGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTCGCTTC AAT



consensusID : consensus_6994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence
                              [TTTCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCATCCTGC]

[+] EMBL CNS08OR9             [TTTCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCATCCTGC]


>consensus_6994#1 TTTCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGT ATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATG TTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGT ATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACG GATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATT GTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCG GTTTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTT GGTGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCT CTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCC AGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTC CTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGA ATGCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAAT CATCCTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6994#0      GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGG 60
consensus_6994#1      ------------------------------------------------------------
                                                                                  

consensus_6994#0      CCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACG 120
consensus_6994#1      ------------------------------------------------------------
                                                                                  

consensus_6994#0      ACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCG 180
consensus_6994#1      ------------------------------------------------------------
                                                                                  

consensus_6994#0      GATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACT 240
consensus_6994#1      ----------------------------------------------------------TT 2
                                                                                 *

consensus_6994#0      TTCAGACCTTCGTAACTGTAATGATT-TATGTACAATGTAGGACTATAACTTAATAGTAT 299
consensus_6994#1      TCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTAT 62
                      *  ******* *     *    *    *********************************

consensus_6994#0      AGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTT 359
consensus_6994#1      AGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTT 122
                      ************************************************************

consensus_6994#0      ATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTAT 419
consensus_6994#1      ATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTAT 182
                      ************************************************************

consensus_6994#0      TTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGA 479
consensus_6994#1      TTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGA 242
                      ************************************************************

consensus_6994#0      TAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGT 539
consensus_6994#1      TAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGT 302
                      ************************************************************

consensus_6994#0      TAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGT 599
consensus_6994#1      TAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGT 362
                      ******************************* ****************************

consensus_6994#0      TTAGTCGGAACCGTTTTATCCTTCCTTGTCTTG-CTCTGTGAGAATG-AGTTCGTTTTGG 657
consensus_6994#1      TTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGG 422
                      ********************************* ************* ************

consensus_6994#0      TGCGTTTGGTCGGTTTCCTGCG-TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCT 716
consensus_6994#1      TGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCT 482
                      ********************** *************************************

consensus_6994#0      TGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAG 776
consensus_6994#1      TGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAG 542
                      ************************************************************

consensus_6994#0      CATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCT 836
consensus_6994#1      CATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCT 602
                      ************************************************************

consensus_6994#0      CAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAAT 896
consensus_6994#1      CAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAAT 662
                      *********************************** ************************

consensus_6994#0      GCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTG-TGGGGAAAGCAAATCA 955
consensus_6994#1      GCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCA 722
                      ****** ************************************ ****************

consensus_6994#0      TCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTC 1015
consensus_6994#1      TCCTGC------------------------------------------------------ 728
                      ******                                                      

consensus_6994#0      GCTTCAAT 1023
consensus_6994#1      --------
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)