These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1023 fasta sequence [GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT-CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT-CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT-CCT-GCG-TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT-GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTCGCTTCAAT] [+] EMBL CNS08ZXU [GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCT GCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTACTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGTGGGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTG ] [+] EMBL CNS08GIJ [ TTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCCCCCACAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGC ] [-] EMBL CNS08ZXT [ TCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCTACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCTCGCG TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTCGCTTCAAT] [-] EMBL CNS08OR8 [ TTGTCCCTCATGCTCTTTTAGTCGTTCTCCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCCT GCG TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCGTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGTG TTCCGCTCGATCCGTTCGAATGCCCCCCCCCCCCCCCGTCCGACTCCGTGTGCCCATC ] [-] EMBL CNS08GII [ agGCACAGCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCT GGC TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGTGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTG GGGTGGCTTCAAT] consensusID : consensus_6994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [TTTCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCATCCTGC] [+] EMBL CNS08OR9 [TTTCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCATCCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6994#0 GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGG 60 consensus_6994#1 ------------------------------------------------------------ consensus_6994#0 CCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACG 120 consensus_6994#1 ------------------------------------------------------------ consensus_6994#0 ACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCG 180 consensus_6994#1 ------------------------------------------------------------ consensus_6994#0 GATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACT 240 consensus_6994#1 ----------------------------------------------------------TT 2 * consensus_6994#0 TTCAGACCTTCGTAACTGTAATGATT-TATGTACAATGTAGGACTATAACTTAATAGTAT 299 consensus_6994#1 TCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTAT 62 * ******* * * * ********************************* consensus_6994#0 AGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTT 359 consensus_6994#1 AGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTT 122 ************************************************************ consensus_6994#0 ATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTAT 419 consensus_6994#1 ATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTAT 182 ************************************************************ consensus_6994#0 TTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGA 479 consensus_6994#1 TTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGA 242 ************************************************************ consensus_6994#0 TAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGT 539 consensus_6994#1 TAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGT 302 ************************************************************ consensus_6994#0 TAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGT 599 consensus_6994#1 TAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGT 362 ******************************* **************************** consensus_6994#0 TTAGTCGGAACCGTTTTATCCTTCCTTGTCTTG-CTCTGTGAGAATG-AGTTCGTTTTGG 657 consensus_6994#1 TTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGG 422 ********************************* ************* ************ consensus_6994#0 TGCGTTTGGTCGGTTTCCTGCG-TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCT 716 consensus_6994#1 TGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCT 482 ********************** ************************************* consensus_6994#0 TGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAG 776 consensus_6994#1 TGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAG 542 ************************************************************ consensus_6994#0 CATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCT 836 consensus_6994#1 CATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCT 602 ************************************************************ consensus_6994#0 CAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAAT 896 consensus_6994#1 CAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAAT 662 *********************************** ************************ consensus_6994#0 GCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTG-TGGGGAAAGCAAATCA 955 consensus_6994#1 GCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCA 722 ****** ************************************ **************** consensus_6994#0 TCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTC 1015 consensus_6994#1 TCCTGC------------------------------------------------------ 728 ****** consensus_6994#0 GCTTCAAT 1023 consensus_6994#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||