These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6998#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1260 fasta sequence [TTTTTTTTTTTTTTTCACTGTTATAACATTGTATTTGACAACTTCTCTCAAACACTCCCATCAAGAGAAGACAATTCTGGTGTACCCTAAAATATGGCCGAAAACAACACGTACGCGACCGACCACACTGTAGCTAAATAGTGGATAATTTAGTTTAGTAAAATTATACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTTTGCTCTACGCTCTAAATTGCAGTCCGATACAAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAAAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGGACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCATGACCAGCGGGCAACAGTTTGTGCGGCAGGTCGGCCATCGGCCAGC-GGAAGCTAACGCTCGGCGCACCGATGCATCCAATCCAGTTGAAGTGCACCAGCAGCACGTTCGCTTCGATTAGACCGTCGTCCCCGGTGCGATGGAAGCACTTCTTCAGACAGAACCGCTCCATTTGTCTGTGAAGAGAAGTGTAGAAACATATGATCAATCGATTGGATTTGCAAAAGCAAACACAGAATGGAATGTCAACACTTACGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGGCTTGGCTCGGTCGTCCCTTCCACCAGCCGCATAAACTCGATGTGCGCCA-CAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCG-AGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCA-GCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAGCTGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCAGCTGCGTGATCCGGGGTACGGCCGGTAGGGAGGCACCGGTCGGTGGCCCGTCATCTCTGCGTACAAACCTCTCCCGCAAGGAAGCTGGAAGAAAATTGATAAAA] [+] EMBL AGA281539 [TTTTTTTTTTTTTTTCACTGTTATAACATTGTATTTGACAACTTCTCTCAAACACTCCCATCAAGAGAAGACAATTCTGGTGTACCCTAAAATATGGCCGAAAACAACACGTACGCGACCGACCACACTGTAGCTAAATAGTGGATAATTTAGTTTAGTAAAATTATACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTTTGCTCTACGCTCTAAATTGCAGTCCGATACAAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAAAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGGACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCGTGACCAGCGGGCAACAGTTTGTGCGGCAGGTCGGCCATCGGCCAGC GGAAGCTAA ] [+] EMBL CNS08YXA [ AACACGTACGCGACCGACCACACTGTAGCTAAATAGTGGATAATTTAGTTTAGTAAAATTATACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTGTTTGCTCTACGCTCTAAATTGCAGTCCGATACAAGATTCTATCCACGACGATCCTTCCGAACTTTAAACAAAAAGAGGGACTACACCATCGTCAGTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGGACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCATGACCAGCGGGCAACAGTTTGTGCGGCAGGTCGGCCATCGG CAGC GGAAGCTAACGCTCGGCGCACCGATGCATCCAATCCAGTTGAAGTGCACCAGCAGCACGTTCGCTTCGATTAGACCGTCGTCCCCGGTGCGATGGAAGCACTTCTTCAGACAGAACCGCTCCATTTGTCTGTGAAGAGAAGTGTAGAAACATATGATCAATCGATTGGATTTGCAAAAGCAAACACAGAATGGAATGTCAACACTTACGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGGCTTGGCTCGGTCGTCCCTTCCACCAGCCGCATAAACTCGATGTGCGCCA CAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCG AGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCA GCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAGCTGCGCAGGGTCCGGTGCCGGAACTGC ] [-] EMBL CNS08YXB [ CCACAGAAAAAACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGGACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCATGACCAGCGGGCAACAGTTTGTGCGGCAGGTCGGCCATCGGCCAGCGGGAAG TAACGCTCGGCGCACCGATGCATCCAATCCAGTTGAAGTGCACCAGCAGCACGTTCGCTTCGATTAGACCGTCGTCCCCGGTGCGATGGAAGCACTTCTTCAGACAGAACCGCTCCATTTGTCTGTGAAGAGAAGTGTAGAAACATATGATCAATCGATTGGATTTGCAAAAGCAAACACAGAATGGAATGTCAAAACTTACGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGCGTCTGCTCGGTCGTCCCTTCCACCAGCCGCATAAACTCGATGTGCGCCAGCAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCG AGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCA GCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAG TGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCAGCTGCGTGATCCGGGGTACGGCCGGTAGGGAGGCACCGGTCGGTGGCCCGTCATCTCTGCGTACAAACCTCTCCCGCAAGGAAGCTGGAAGAAAATTGATAAAA] [-] EMBL AGA283131 [ GTATCCGCTCGAAGCCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCAYGCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGYAGCTGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCAGCTGCGTGATCCGGGGTACGGCCGGTAGGGAGGCACCGGT ] consensusID : consensus_6998#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence [AGATNGCCCCAGGCTTAAACACACGTACGCGACCGACCACACTGTAGCTAANTTAGTGGATAATTTAGTTTAGTAAAATTGTACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTATTGCTCTACGCTACTAAATTAGCAGTCCGATACAAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAACAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTATCTCGGGAGGTTCCAGCCGGACAGAGGTGGATGAGGATGCCGCGCCGTGCTAGCGGCTAGGGCGTGACCAGCGGAGCAACAGNNNTAGTGCGGCAGGTCGGNCCATCGGCCAGCGGAAGCTAACGCTCGGCCGCACCGATNGCATCCAATCCAGTTGAAAGTTGCACCAGACAGACACAGTATTAGCTTACGATATAGACCAGACGTACCCCCGGTGCGATGGAAGCANTTCATTCAGAACAGAACACCGGGTCCATNNNNTGTCTGTGAAAAGAGCAAATGTAGAAAAACAATATGATCAATAGGGATNGGGCATNGNACACAAAAAGGCAAAAACAAAACAAACTTGAATGGCANACACTATACGCCATNCAGTAANATNGGAAGGAACCGCATCNGATATGTATGCAGCATGATCCGTCCAGAGANACAGGGTCAAAGANCTCGCAAGACANNGGACT] [+] EMBL AL697615 [AGATNGCCCCAGGCTTAAACACACGTACGCGACCGACCACACTGTAGCTAANTTAGTGGATAATTTAGTTTAGTAAAATTGTACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTATTGCTCTACGCTACTAAATTAGCAGTCCGATACAAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAACAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTATCTCGGGAGGTTCCAGCCGGACAGAGGTGGATGAGGATGCCGCGCCGTGCTAGCGGCTAGGGCGTGACCAGCGGAGCAACAGNNNTAGTGCGGCAGGTCGGNCCATCGGCCAGCGGAAGCTAACGCTCGGCCGCACCGATNGCATCCAATCCAGTTGAAAGTTGCACCAGACAGACACAGTATTAGCTTACGATATAGACCAGACGTACCCCCGGTGCGATGGAAGCANTTCATTCAGAACAGAACACCGGGTCCATNNNNTGTCTGTGAAAAGAGCAAATGTAGAAAAACAATATGATCAATAGGGATNGGGCATNGNACACAAAAAGGCAAAAACAAAACAAACTTGAATGGCANACACTATACGCCATNCAGTAANATNGGAAGGAACCGCATCNGATATGTATGCAGCATGATCCGTCCAGAGANACAGGGTCAAAGANCTCGCAAGACANNGGACT] consensusID : consensus_6998#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [CCCCCGGTGCGATGGAAGCACTTCTTCAGACCAGAACCGCTTCCATTTTGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACCACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGCGTCTGCTCGGTCGTCTCTTCGACCAGCCGCATAAACTCGATGTGCGCCAGCAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCGAGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCAGCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAGCTGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM592092 [CCCCCGGTGCGATGGAAGCACTTCTTCAGACCAGAACCGCTTCCATTTTGCATCGTAGTGCAGCACCGCATCGTTGTTGCGCATGATCGTGAGCAGCCGGTTAACGACCTCGAAGACCACGCTCCAGCTGCTCGTTAAACCGGTGCCACAGACCCATCCAGATCGCCCACCGTCCGGTAGGTGGAGCGAAGCGTCTGCTCGGTCGTCTCTTCGACCAGCCGCATAAACTCGATGTGCGCCAGCAGCAGCTTCGGCGAGTGGACGTACTCCTGCTGACATTCGCGCACCTGTATCCGCTCGAGGCGCCAGTTCTCCTGAATGCCCGCAGTTTGGAGGGTGGCAGCAGCGGCTTTACCGCGCGGTGGCTGCAGCTGAACGCACAGGACGAAGCTGCGCAGGGTCCGGTGCCGGAACTGCAGCACGCCGGCATCCTCCTCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTTCGCGATCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6998#0 TTTTTTTTTTTTTTTCACTGTTATAACATTGTATTTGACAACTTCTCTCAAACACTCCCA 60 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 ------------------------------------------------------------ consensus_6998#0 TCAAGAGAAGACAATTCTGGTGTACCCTAAAATATGGCCGAAAACAACACGTACGCGACC 120 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 ------------------------------------------------------------ consensus_6998#0 GACCACACTGTAGCTAAATAGTGGATAATTTAGTTTAGTAAAATTATACGTCCAAAACGC 180 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 ------------------------------------------------------------ consensus_6998#0 TTTAAACCGAAACACTACACTATATCTCTTTGCTCTACGCTCTAAATTGCAGTCCGATAC 240 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 ------------------------------------------------------------ consensus_6998#0 AAGATTCTATCTACGACGATCCTTCCGAAGTTTAAAAAAAAAGAGGGACTACATCATCGT 300 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 ------------------------------------------------------------ consensus_6998#0 CTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTACGTTCCACAGCAAACACTCGAGAA 360 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 ------------------------------------------------------------ consensus_6998#0 ACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACACACCTTTCGGGAGGTTCCAGCCGG 420 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 ------------------------------------------------------------ consensus_6998#0 ACGAGGTGGATGAGGATGCCGCGCCGTGCTGCGGCTGGGCATGACCAGCGGGCAACAGTT 480 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 ------------------------------------------------------------ consensus_6998#0 TGTGCGGCAGGTCGGCCATCGGCCAGCGGAAGCTAACGCTCGGCGCACCGATGCATCCAA 540 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 -----------------------------------------AGATNGCCCCAGGCTTAAA 19 consensus_6998#0 TCCAGTTGAAGTGCACCAGCAGCACGTTCGCTTCGATTAGACCGTCGTCCCCGGTGCGAT 600 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 CACACGTACGCGACCGACCACACTGTAGCTAANTTAGTGGATAATTTAGTTTAGTAAAAT 79 consensus_6998#0 GGAAGCACTTCTTCAGACAGAACCGCTCCATTTGTCTGTGAAGAGAAGTGTAGAAACATA 660 consensus_6998#2 ------------------------------------------------------------ consensus_6998#1 TGTACGTCCAAAACGCTTTAAACCGAAACACTACACTATATCTCTATTGCTCTACGCTAC 139 consensus_6998#0 TGATCAATCGATTGGATTTGCAAAAGCAAACACAGAATGGAATGTCAACACTTACGCATC 720 consensus_6998#2 ----CCCCCGGTGCGA--TGGAAGCACTTCTTCAGACCAGAACCGCTTCCATTTTGCATC 54 consensus_6998#1 TAAATTAGCAGTCCGA--TACAAGATTCTATCTACGAC-GATCCTTCCGAAGTTTAAAAA 196 * * ** * ** * ** * * consensus_6998#0 GTAGTGCAGCACCGCATCGTTGT---TGCGC-ATGATCGTGAGCAG--CCGGTTAACGAC 774 consensus_6998#2 GTAGTGCAGCACCGCATCGTTGT---TGCGC-ATGATCGTGAGCAG--CCGGTTAACGAC 108 consensus_6998#1 ACAAAGAGGGACTACATCATCGTCTTTGCGCTACTGCTATGATTCGTACTGCTTCGTTAC 256 * * * ** **** * ** ***** * *** * * * ** ** consensus_6998#0 CT--CGAAGAC-ACGCTCCAG-----------CTGCTCGTTAAACCGGTGCCACAGACCC 820 consensus_6998#2 CT--CGAAGACCACGCTCCAG-----------CTGCTCGTTAAACCGGTGCCACAGACCC 155 consensus_6998#1 GTTCCACAGCAAACACTCGAGAAACATGAGGCCCGCCTTGTGATCCGTCCCGACGAACAC 316 * * ** ** *** ** * ** * * *** * ** ** * consensus_6998#0 ATC-AGATCGCCCACCGTCCGGTAGGTGGAGC--GAAGGCTTGGCTCGGTCGTCCCTTCC 877 consensus_6998#2 ATCCAGATCGCCCACCGTCCGGTAGGTGGAGC--GAAGCGTCTGCTCGGTCGTCTCTTCG 213 consensus_6998#1 ACCTATCTCGGGAGGTTCCAGCCGGACAGAGGTGGATGAGGATGCCGCGCCGTGCTAGCG 376 * * * *** * * * *** ** * ** * *** * consensus_6998#0 ACCAGCCGCATAAACTCGATGTGCGCCA-CAGCAGCTTCGGCGAGTGGACGTACTCCT-- 934 consensus_6998#2 ACCAGCCGCATAAACTCGATGTGCGCCAGCAGCAGCTTCGGCGAGTGGACGTACTCCT-- 271 consensus_6998#1 GCTAGG-GCGTGA-CCAGCGGAGCAACAGNNNTAG-TGCGGCAGGTCGGNCCATCGGCCA 433 * ** ** * * * * * ** ** ** * **** ** * * consensus_6998#0 ------GCTGACATTCG--CGCACC---TGTATCCGCTCGAGGCGCCAGTTCTCCTGAAT 983 consensus_6998#2 ------GCTGACATTCG--CGCACC---TGTATCCGCTCGAGGCGCCAGTTCTCCTGAAT 320 consensus_6998#1 GCGGAAGCTAACGCTCGGCCGCACCGATNGCATCCAATCCAGTTGAAAGTTGCACCAGAC 493 *** ** *** ****** * **** ** ** * **** * * consensus_6998#0 GCCCGCAGT-TTGGAGGGTGGCA-GCAGCGGCTTTACC----GCGCGGTGGCTGCAGCTG 1037 consensus_6998#2 GCCCGCAGT-TTGGAGGGTGGCA-GCAGCGGCTTTACC----GCGCGGTGGCTGCAGCTG 374 consensus_6998#1 AGACACAGTATTAGCTTACGATATAGACCAGACGTACCCCCGGTGCGATGGAAGCANTTC 553 * **** ** * * * * * * **** * *** *** *** * consensus_6998#0 AAC--GCACAGGAC---GAAGCTGCGCAGGGTCCGGTGCCGGAAC---TGCAGCACGCCG 1089 consensus_6998#2 AAC--GCACAGGAC---GAAGCTGCGCAGGGTCCGGTGCCGGAAC---TGCAGCACGCCG 426 consensus_6998#1 ATTCAGAACAGAACACCGGGTCCATNNNNTGTCTGTGAAAAGAGCAAATGTAGAAAAACA 613 * * **** ** * * *** * ** * ** ** * * consensus_6998#0 GCATCCTCC-TCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTT 1148 consensus_6998#2 GCATCCTCC-TCCGAACAGTCCAGCGTCCAGCGGGTGTCGCAGTCGGTGGCTAGTTTGTT 485 consensus_6998#1 ATATGATCAATAGGGATNGGGCATNGNACACAAAAAGGCAAAAACAAAACAAACTTGAAT 673 ** ** * * * * ** * ** * * * * * ** * consensus_6998#0 CGCGATCAG-CTGCGTGA-TCCGGGGTACGGCCGGTAGGGAGGCACCGGTCGGTGGCCCG 1206 consensus_6998#2 CGCGATCGG-ACGCGTGG-GCGGACGCGTGGGCGGACGCGTGG-GCGGACGCGTGGGCGG 542 consensus_6998#1 GGCANACACTATACGCCATNCAGTAANATNGGAAGGAAC-CGCATCNGATATGTATGCAG 732 ** * ** * * * * * * * ** * * consensus_6998#0 TCATCTCTGCGTACAAACCTCTCCCGCAAGGAAGCTGGAAGAAAATTGATAAAA 1260 consensus_6998#2 ------------------------------------------------------ consensus_6998#1 CATGATCCGTCCAGAGANACAGGGTCAAAGANCTCGCAAGACANNGGACT---- 782 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||