Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 7 cluster # 7       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7#0 length = 563 sequences # 1  
consensus_7#1 length = 270 sequences # 1  

consensusID : consensus_7#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence
                              [CCGCCTTCTTCTACATTGTGGCGGGCATAGATGGCGATAGATGTGATGGGAATTATAACAGAACTATAAATATATACATATACATATAGACATGCATACAAAATACATGTATTTACAATAAAAAGCTCTACATGTCCAAACGCTTACAACACAGAGATCACTGAATGAATTGGCAAAAAATGAGGGGGCGGGAAGGTGGTGGTAGTAGGGGCAGAAATAGGTAGGGTTATCAATTCATATTCGAGATATGCACATGACGCCATGCGTGTTTCAAAGGACTACTAACACTAAGACTTTTTGCCCTCATATCTTACAGCTTGATAAGCTTCATCATCGTTGTTGAACGTGTTTATTGTGTCAGTTTCCATCTTTTGCTTTGGTGCGATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTGTTGGGTAGAGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAGTCGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTACATATAAACATATATATACA]

[+] EMBL BM632480             [CCGCCTTCTTCTACATTGTGGCGGGCATAGATGGCGATAGATGTGATGGGAATTATAACAGAACTATAAATATATACATATACATATAGACATGCATACAAAATACATGTATTTACAATAAAAAGCTCTACATGTCCAAACGCTTACAACACAGAGATCACTGAATGAATTGGCAAAAAATGAGGGGGCGGGAAGGTGGTGGTAGTAGGGGCAGAAATAGGTAGGGTTATCAATTCATATTCGAGATATGCACATGACGCCATGCGTGTTTCAAAGGACTACTAACACTAAGACTTTTTGCCCTCATATCTTACAGCTTGATAAGCTTCATCATCGTTGTTGAACGTGTTTATTGTGTCAGTTTCCATCTTTTGCTTTGGTGCGATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTGTTGGGTAGAGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAGTCGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTACATATAAACATATATATACA]


>consensus_7#0 CCGCCTTCTTCTACATTGTGGCGGGCATAGATGGCGATAGATGTGATGGGAATTATAACA GAACTATAAATATATACATATACATATAGACATGCATACAAAATACATGTATTTACAATA AAAAGCTCTACATGTCCAAACGCTTACAACACAGAGATCACTGAATGAATTGGCAAAAAA TGAGGGGGCGGGAAGGTGGTGGTAGTAGGGGCAGAAATAGGTAGGGTTATCAATTCATAT TCGAGATATGCACATGACGCCATGCGTGTTTCAAAGGACTACTAACACTAAGACTTTTTG CCCTCATATCTTACAGCTTGATAAGCTTCATCATCGTTGTTGAACGTGTTTATTGTGTCA GTTTCCATCTTTTGCTTTGGTGCGATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGT GTTTGTTGGGTAGAGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCA ACAGTCGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGT GTACATATAAACATATATATACA



consensusID : consensus_7#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence
                              [AGAATCGGCACGAGGGTCTATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTGTTGGGTAGACGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAGTCGGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTTTCTGACTGTCGGTCGGACACAGCTGTGAAGAACTACGCGGCAAATGTTATGACTTCTGTAGGGCGCGCATATTAATGGTTTAGTAGCATT]

[+] EMBL BX469306             [AGAATCGGCACGAGGGTCTATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTGTTGGGTAGACGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAGTCGGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTTTCTGACTGTCGGTCGGACACAGCTGTGAAGAACTACGCGGCAAATGTTATGACTTCTGTAGGGCGCGCATATTAATGGTTTAGTAGCATT]


>consensus_7#1 AGAATCGGCACGAGGGTCTATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTG TTGGGTAGACGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAG TCGGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTT TCTGACTGTCGGTCGGACACAGCTGTGAAGAACTACGCGGCAAATGTTATGACTTCTGTA GGGCGCGCATATTAATGGTTTAGTAGCATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7#0      CCGCCTTCTTCTACATTGTGGCGGGCATAGATGGCGATAGATGTGATGGGAATTATAACA 60
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      GAACTATAAATATATACATATACATATAGACATGCATACAAAATACATGTATTTACAATA 120
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      AAAAGCTCTACATGTCCAAACGCTTACAACACAGAGATCACTGAATGAATTGGCAAAAAA 180
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      TGAGGGGGCGGGAAGGTGGTGGTAGTAGGGGCAGAAATAGGTAGGGTTATCAATTCATAT 240
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      TCGAGATATGCACATGACGCCATGCGTGTTTCAAAGGACTACTAACACTAAGACTTTTTG 300
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      CCCTCATATCTTACAGCTTGATAAGCTTCATCATCGTTGTTGAACGTGTTTATTGTGTCA 360
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      GTTTCCATCTTTTGCTTTGGTG-CGATTCCTTAAGGAATCGGCGAACGCCACGACAGAGG 419
consensus_7#1      ------AGAATCGGCACGAGGGTCTATTCCTTAAGGAATCGGCGAACGCCACGACAGAGG 54
                         *   *  **    * * * ***********************************

consensus_7#0      TGTTTGTTGGGTAGA-GTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAG 478
consensus_7#1      TGTTTGTTGGGTAGACGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAG 114
                   *************** ********************************************

consensus_7#0      CAACAGTCG-TCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATT 537
consensus_7#1      CAACAGTCGGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATT 174
                   ********* **************************************************

consensus_7#0      TGTGTACAT-ATAAACATATATATACA--------------------------------- 563
consensus_7#1      TGTGTTTCTGACTGTCGGTCGGACACAGCTGTGAAGAACTACGCGGCAAATGTTATGACT 234
                   *****   * *    *      * ***                                 

consensus_7#0      ------------------------------------
consensus_7#1      TCTGTAGGGCGCGCATATTAATGGTTTAGTAGCATT 270
                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)