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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1205 fasta sequence
[CCGCGCGCTGCTCTCGCGCACTCCCGAGCCGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACG-GTAAAGGCCAGAAAGGCAAACTCAAGCAAGATGGCTGCCGGGTGGTCTGTCTCGAAGGTGGTTATGCAAACTTTCGTCAGTCATTTCCGGAGTGGTGCGAGGATGAAGTCATCAACGCGAACCTGCAGACGGGCTGTGCGGCAACGGAGCAACTGATGGGATTAAGATCCCTCCGCATTTCTATCCCATTCTCGGACTCGGCGTGCAGCAGCAGCACCGAGTCGTCGGACTGTGAGAGCAGCACCAACTACCTGTCGGAGGCGGCGGTTAGCGTCGAGCCGGTCGAAATACTGCCCGGCCTCTTCCTCGGCAATGCCTCGCACAGTGAGGATCTGAAGTCGCTGAAAAAGTACAACATTAAATACATTCTGAACGTGACGCCCGATCTGCCGAATGTGTTCGAACGGGACGGACAGATACGCTATCTGCAGATACCGATCACCGACCACTGGTCGCAGGCGGGCGACCTCGCGAACCACTTCCCGGATGCGATCAAGTTCA-TTGATG-AAGCCCGCTCGAACGGATGCGGCGTGCTGGTGCACTGTCTGGCCGGCGTGTCCCGCTCGGTGACGGTCNACGCTCGCCTACCTGATGTTCGCCCGCACCCTCTCGCTGAACGACGCCTTTCTGCTGGTGCGCTCGCGCAAACCGGACGTCTCGCCCCAACTTCCACTTTATGCAGCAGCTGCACAGCTTCGAGCAGCAGCCTCCACATCAACCCCACCCAGTTCGGCGTTCGCCAAGCAGGCGCTCTACTCGGCCTCCTCTTCCTCAGCGGCCTCTTCCTCCTCGGTCGGCGGCGGTGCATCCTCAACCGGTGGCCATTCCGTGTCCACGACCCCGTACAGTGCCAGCTCGATCGGGTCGT]
[+] EMBL BM616156 [CCGCGCGCTGCTCTCGCGCACTCCCGAGCCGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACG GTAAAGGCCAGAAAGGCAAACTCAAGCAAGATGGCTGCCGGGTGGTCTGTCTCGAAGGTGGTTATGCAAACTTTCGTCAGTCATTTCCGGAGTGGTGCGAGGATGAAGTCATCAACGCGAACCTGCAGACGGGCTGTGCGGCAACGGAGCAACTGATGGGATTAAGATCCCTCCGCATTTCTATCCCATTCTCGGACTCGGCGTGCAGCAGCAGCACCGAGTCGTCGGACTGTGAGAGCAGCACCAACTACCTGTCGGAGGCGGCGGTTAGCGTCGAGCCGGTCGAAATACTGCCCGGCCTCTTCCTCGGC ]
[+] EMBL AGA281522 [ taCCACGATTAATGTGCTGCATCGCAAACTCAAGCAAGATGGCTGCCGGGTGGTCTGTCTCGAAGGTGGTTATGCAAACTTTCGTCAGTTATTTCCGGAGTGGTGCGAGGATGAAGTCATCAACGCGAACCTGCAGACGGGCTGTGCGGCAACGGAGCAACTGATGGGATTAAGATCCCTCCGCATTTCTATCCCATTCTCGGACTCGGCGTGCAGCAGCAGCACCGAGTCGTCGGACTGTTAGAGCAGCACCAACTACCTGTCGGAGGCGGCGGTTAGCGTCGAGCCGGTCGAAATACTGCCCGGCCTCTTCCTCGGCAATGCCTCGCACAGTGAGGATCTGAAGTCGCTGAAAAAGTACAACATTAAATACATTCTGAACGTGACGCCCGATCTGCCGAATGTTTTCGAACGGGACGGCCAGATACGCTATCTGCAGANACCGATCACCGACCACTGGTCCCAGGCGGGCGATCTGGCGAACCACT ]
[+] EMBL BX619921 [ GGCGGTTAGCGTCGAGCCGGTCGAAATACTGCCCGGCCTCTTCCTCGGCAATGCCTCGCACAGTGAGGATCTGAAGTCGCTGAAAAAGTACAACATTAAATACATTCTGAACGTGACGCCCGATCTGCCGAATGTGTTCGAACGGGACGGACAGATACGCTATCTGCAGATACCGATCACCGACCACTGGTCGCAGGCGGGCGACCTCGCGAACCACTTCCCGGATGCGATCAAGTTCA TTGATG AAGCCCGCTCGAACGGATGCGGCGTGCTGGTGCACTGTCTGGCCGGCGTGTCCCGCTCGGTGACGGTCNACGCTCGCCTACCTGATGTTCGCCCGCACCCTCTCGCTGAACGACGCCTTTCTGCTGGTGCGCTCGCGCAAACCGGACGTCTCGCCCCAACTTCCACTTTATGCAGCAGCTGCACAGCTTCGAGCAGCAGCCTCCACATCAACCCCACCCAGTTCGGCGTTCGCCAAGCAGGCGC ]
[+] EMBL AL931922 [ gcccgaggATT AATACATTCTGAACGTGACGCCCGATNTG CGAATGTGTTCGAACGGGACGGACAGATACGCTATCTGCAGATA CGATCACCGACCACTGGTCGCAGGCGGGCGACCTCGCGAACCACTTCCCGGATGCGATCAAGTTCATTTGATGAAAGCCCGCTCGAACGGATGCGGCGTGCTGGTGCACTGTCTGGCCGGCGTGTCCCGCTCGGTGACGGTC ACGCTCGCCTACCTGATGTTCGCCCGCACCCTCTCGCTGAACGACGCCTTTCTGCTGGTGCGCTCGCGCAAACCGGACGTCTCG CCCAACTTCCACTTTATGCAGCAGCTGCACAGCTTCGAGCAGCAG CTCAACATCGACCCGACCCAG TCGGCGTCCGCCAAGCAGGCGCTCTACTCGGCCTCCTCTTCCTCAGCGGCCTCTTCCTCCTCGGTCGGCGGCGGTGCATCCTCAACCGGTGGCCATTCCGTGTCCACGACCCCGTACAGTGCCAGCTCGATCGGGTCGT]
consensusID : consensus_7000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[CCGTTCAAAACACAACACCCGTTTGTTTCATCGCTTCGCGTACAGCGCTTCATTCATTCTCGTTTCGCTCTTCCTTCGCCAAAGGTGTGTGTAGCGCGCTGCTCTCGCGCACTCCCGAGCCGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTAAGTTTGCTCTAGTGCTGAGGTTTCCTCCCTCCTCCCCTCCCCCGCTCCCACACACGGACAAGCAACTAGTGAGGCTCGGCATTTATGGAAGCCAGCATATCAACGGAGAAGAGCATAAGTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACGGTAAAGGCCAGAAAGGTAAACAAACAAAGTGTCAAAAGTGTTCGCGATAAGCGCGATAATACACGCACGCACACACCCAAC]
[+] EMBL BM600502 [CCGTTCAAAACACAACACCCGTTTGTTTCATCGCTTCGCGTACAGCGCTTCATTCATTCTCGTTTCGCTCTTCCTTCGCCAAAGGTGTGTGTAGCGCGCTGCTCTCGCGCACTCCCGAGCCGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTAAGTTTGCTCTAGTGCTGAGGTTTCCTCCCTCCTCCCCTCCCCCGCTCCCACACACGGACAAGCAACTAGTGAGGCTCGGCATTTATGGAAGCCAGCATATCAACGGAGAAGAGCATAAGTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACGGTAAAGGCCAGAAAGGTAAACAAACAAAGTGTCAAAAGTGTTCGCGATAAGCGCGATAATACACGCACGCACACACCCAAC]
consensusID : consensus_7000#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[CCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTTCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAAGAGAAACAGTGAGTGTGCGAGTGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGGACGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACGGCAAGGCCAGAAAGGTAAACAAACAAAGTGTCAAAAGTGTTCGCGATAAGCGCGATAATACACGCACGCACACACGCAAAAACCGGGGGG]
[+] EMBL AGA285458 [CCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTTCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAAGAGAAACAGTGAGTGTGCGAGTGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGGACGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACGGCAAGGCCAGAAAGGTAAACAAACAAAGTGTCAAAAGTGTTCGCGATAAGCGCGATAATACACGCACGCACACACGCAAAAACCGGGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7000#1 CCGTTCAAAACACAACACCCGTTTGTTTCATCGCTTCGCGTACAGCGCTTCATTCATTCT 60
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 ------------------------------------------------------------
consensus_7000#1 CGTTTCGCTCTTCCTTCGCCAAAGGTGTGTGTAGCGCGCTGCTCTCGCGCACTCCCGAGC 120
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 -------------------------------CCGCGCGCTGCTCTCGCGCACTCCCGAGC 29
consensus_7000#1 CGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGC 180
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 CGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGC 89
consensus_7000#1 GAGATTGTAAGTTTGCTCTAGTGCTGAGGTTTCCTCCCTCCTCCCCTCCCCCGCTCCCAC 240
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 GAGAT------------------------------------------------------- 94
consensus_7000#1 ACACGGACAAGCAACTAGTGAGGCTCGGCATTTATGGAAGCCAGCATATCAACGGAGAAG 300
consensus_7000#2 ------------------------------------CCGTTCTTCGCGTTCTTTTCCAGC 24
consensus_7000#0 ------------------------------------------------------------
consensus_7000#1 AGCATAAGTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGT 360
consensus_7000#2 CGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGT 84
consensus_7000#0 --------TGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGT 146
****************************************************
consensus_7000#1 TTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGAT 420
consensus_7000#2 TTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTTCTGCACTTCGGCGAGTTGGAT 144
consensus_7000#0 TTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGAT 206
************************************** *********************
consensus_7000#1 GAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTG--T 478
consensus_7000#2 GAAGCAACATCGAAAGATCGTTTTCTAAGAGAAACAGTGAGTGTGCGAGTGTGTGTGTGT 204
consensus_7000#0 GAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTG--T 264
**************************** **************************** *
consensus_7000#1 TGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGG 538
consensus_7000#2 TGTGAAAAGTGTGAAAAAATGGACTGTGGACGATAGCTTTTGCGGCTGCTCCTGTTGCGG 264
consensus_7000#0 TGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGG 324
**************************** ******************************
consensus_7000#1 GTAAAGGGCCACGGTAAAGGCCAGAAAGGTAAAC--AAACAAAGTGTCAA--AAGTGTTC 594
consensus_7000#2 GTAAAGGGCCACGGCAA-GGCCAGAAAGGTAAAC--AAACAAAGTGTCAA--AAGTGTTC 319
consensus_7000#0 GTAAAGGGCCACGGTAAAGGCCAGAAAGGCAAACTCAAGCAAGATGGCTGCCGGGTGGTC 384
************** ** *********** **** ** *** ** * *** **
consensus_7000#1 -GCGATAAGCGCGATAATACACGCACGCACACACCCAAC--------------------- 632
consensus_7000#2 -GCGATAAGCGCGATAATACACGCACGCACACACGCAAAAACCGGGGGG----------- 367
consensus_7000#0 TGTCTCGAAGGTGGTTATGCAAACTTTCGT-CAGTCATTTCCGGAGTGGTGCGAGGATGA 443
* * * * * ** ** * * ** **
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 AGTCATCAACGCGAACCTGCAGACGGGCTGTGCGGCAACGGAGCAACTGATGGGATTAAG 503
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 ATCCCTCCGCATTTCTATCCCATTCTCGGACTCGGCGTGCAGCAGCAGCACCGAGTCGTC 563
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 GGACTGTGAGAGCAGCACCAACTACCTGTCGGAGGCGGCGGTTAGCGTCGAGCCGGTCGA 623
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 AATACTGCCCGGCCTCTTCCTCGGCAATGCCTCGCACAGTGAGGATCTGAAGTCGCTGAA 683
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 AAAGTACAACATTAAATACATTCTGAACGTGACGCCCGATCTGCCGAATGTGTTCGAACG 743
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 GGACGGACAGATACGCTATCTGCAGATACCGATCACCGACCACTGGTCGCAGGCGGGCGA 803
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 CCTCGCGAACCACTTCCCGGATGCGATCAAGTTCATTGATGAAGCCCGCTCGAACGGATG 863
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 CGGCGTGCTGGTGCACTGTCTGGCCGGCGTGTCCCGCTCGGTGACGGTCNACGCTCGCCT 923
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 ACCTGATGTTCGCCCGCACCCTCTCGCTGAACGACGCCTTTCTGCTGGTGCGCTCGCGCA 983
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 AACCGGACGTCTCGCCCCAACTTCCACTTTATGCAGCAGCTGCACAGCTTCGAGCAGCAG 1043
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 CCTCCACATCAACCCCACCCAGTTCGGCGTTCGCCAAGCAGGCGCTCTACTCGGCCTCCT 1103
consensus_7000#1 ------------------------------------------------------------
consensus_7000#2 ------------------------------------------------------------
consensus_7000#0 CTTCCTCAGCGGCCTCTTCCTCCTCGGTCGGCGGCGGTGCATCCTCAACCGGTGGCCATT 1163
consensus_7000#1 ------------------------------------------
consensus_7000#2 ------------------------------------------
consensus_7000#0 CCGTGTCCACGACCCCGTACAGTGCCAGCTCGATCGGGTCGT 1205
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||