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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1173 fasta sequence
[AATTCCCCGAGATTAACGGGCTAAGAGCGGGCGACACGAGCAGCAAGCANCAAGCGAAAACTCGTAAACTTTTATATAAGACTTTTCCAATAATAAAAATAAATTAAAGAAAATTAATATTAAAAAAAAGAGAAGTTTATATAGTATATGGAGATTAAAGCAGAAAACTGGTAGAACAAGAAACAACGAAGGCCAAAANATAATTAAAAAACGCATAACTATATACTAAACACTACTCTACTACTCTACTACTACTATAACAATACGTCCATGTNTGCGGCTAGGAGAACATTGGCNGTGCGATTGAGCGGAACNAGCCTATNTAAGCTNTGTGCGCGAGGCGCGCCGGCATAATTGTTATGGGCGGTGGTACTTGCGCGTAGCGCCCAACCGGCCGGTTCGTCGGAAAAATTTCAGAACGATTTACTTAACCACAGTGTAAAACACATAACAACACAATATATTGAAGGANAGNACAGCCAAAGCGGATCACACGAATTGCACTCAAAGAACACAAGGCCAACCAATTCTCCNATAAACTAACGCTTGGCGCCNAATTCTTCCTTTTTCCCGAGTCGTGGTCCTTTCCTTGGTGNCGGCCTCGGGGTGGTCNTCCCCTTTCCATCCGANTCCACCTCCCTCTTTTCACTCCGGATCGCTNGTTCAGACCATTTCCGGCCCCGAGCTCCACAGGCCGNCCGGCGCGAAAACGCGCAGCGTCTCNCCAGAGAGNGGGGTTGGCGCTTTCTCTNTCCCCCCACGTCCGCGCGTTTCCAGGCTGCTCCGGTCTGGTTCGGTCNCNTTTCGTCGCGGTCTCCCCCTNCGGGCCGCACCNGGGNCCTGGATCACGCCACCGCNCAGCGCCAGTNCCCATTCCGCCTCTTGGTGCCGGTNTGTCCTTTTTCACTTATCGCGCCGACTGTACCCGGGCGNCGTCACGCGCGNGTTGTTNGCTCCAGGGTGGCGCTTCGACANCGCGGGGTTCTTGGCGTNNCCCCGGGTGGGGTCGTNGGCTGGGGCGTAGGACGGGGTTGGTCNTCCTGGTCCCGNAGCANTTCGGGCCGNTCCCNCGGTGGTCGTCTCACAGGGGCCGNNGCGCATTTTGCACGTTNATTTCGCGCGACTTTCTACTCGGCCCGTTGCTCGTGCCCCCCTTCCCGTCGNAGCCTCGCG]
[+] EMBL AL929800 [AATTCCCCGAGATTAACGGGCTAAGAGCGGGCGACACGAGCAGCAAGCANCAAGCGAAAACTCGTAAACTTTTATATAAGACTTTTCCAATAATAAAAATAAATTAAAGAAAATTAATATTAAAAAAAAGAGAAGTTTATATAGTATATGGAGATTAAAGCAGAAAACTGGTAGAACAAGAAACAACGAAGGCCAAAANATAATTAAAAAACGCATAACTATATACTAAACACTACTCTACTACTCTACTACTACTATAACAATACGTCCATGTNTGCGGCTAGGAGAACATTGGCNGTGCGATTGAGCGGAACNAGCCTATNTAAGCTNTGTGCGCGAGGCGCGCCGGCATAATTGTTATGGGCGGTGGTACTTGCGCGTAGCGCCCAACCGGCCGGTTCGTCGGAAAAATTTCAGAACGATTTACTTAACCACAGTGTAAAACACATAACAACACAATATATTGAAGGANAGNACAGCCAAAGCGGATCACACGAATTGCACTCAAAGAACACAAGGCCAACCAATTCTCCNATAAACTAACGCTTGGCGCCNAATTCTTCCTTTTTCCCGAGTCGTGGTCCTTTCCTTGGTGNCGGCCTCGGGGTGGTCNTCCCCTTTCCATCCGANTCCACCTCCCTCTTTTCACTCCGGATCGCTNGTTCAGACCATTTCCGGCCCCGAGCTCCACAGGCCGNCCGGCGCGAAAACGCGCAGCGTCTCNCCAGAGAGNGGGGTTGGCGCTTTCTCTNTCCCCCCACGTCCGCGCGTTTCCAGGCTGCTCCGGTCTGGTTCGGTCNCNTTTCGTCGCGGTCTCCCCCTNCGGGCCGCACCNGGGNCCTGGATCACGCCACCGCNCAGCGCCAGTNCCCATTCCGCCTCTTGGTGCCGGTNTGTCCTTTTTCACTTATCGCGCCGACTGTACCCGGGCGNCGTCACGCGCGNGTTGTTNGCTCCAGGGTGGCGCTTCGACANCGCGGGGTTCTTGGCGTNNCCCCGGGTGGGGTCGTNGGCTGGGGCGTAGGACGGGGTTGGTCNTCCTGGTCCCGNAGCANTTCGGGCCGNTCCCNCGGTGGTCGTCTCACAGGGGCCGNNGCGCATTTTGCACGTTNATTTCGCGCGACTTTCTACTCGGCCCGTTGCTCGTGCCCCCCTTCCCGTCGNAGCCTCGCG]
consensusID : consensus_7002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 986 fasta sequence
[AATATGTTAATAATAAGTGTGGGGAAAAGAAAAAGAACAACATACAATTCGACATTCGAAGCATAATGATATTTTACAAATTTTCAGTTACTTCAGATTAAATAATGTTTAAGCGTAGATGATATTAATACAAAAAGAAACAAAAAACAAGAGAGAAACGTAGAAGTGCAATGGGAAATGCAGAGGAAAATATGACACTTGTGTCTC-GTTTTTATATAACTCTCTG----TCTCTCTCTCTCTCTTTTAACAACTATTAACAACTACTACCGAAAGCATATCAAGTTGACAAGCTACATAAAATTTAAAACTAACTTAAAAAA-ACACACACACA-TAAGACATGAGAGAAACCCATTGCGAGTAAGCACTTGGAAAGCTTTAGCATATAACTACTACTACACAAAACTCCTCCCCCTTATTTGTGATAAAATGATTAAAAAAGCATGAAAATTGGGTGCAAATAGAAGAGGAAAAAGAGAAGCGAATTAATAAAATCTGATAAAAGAAAAACTCTCCATATTAGTAGATTTGTGCAT-CCTTTAAAACAGCGGGCTAGAGAGCGGGCGACACGAGCAAGCAAGCAGCAAGCGAAAACTCGTAAACTTTTATATAAGACTTTTCCAATTTAAAAATAAATTAAAGAAAATTAATATTAAAAAAAAGAGAAGTTTATTAGTATATGGAGATTAAAGCAGAAAACTGGTAGAAAAGAAAAACGAAGGCCAAAAATAATTAAAAACGCATAACTTTACTAACACTCTCTCTCTCTCTCTCTTTCAATCGTCCATGTTTGCGCTAGAGAACATTGGCGTGCGATGAGCGAAAGCTTTTAAGCTTGTGCGCGAGCGCGCGCATATGTTTGCGTGTTTGCATGCGCAACGCCGTCTCGAAATTTAAACATTTCTACAATTAAAAATACACAATTATGAGCAAAAGCAAGCGATAAGATGCACTAAAAAAAGCACAATTTTTATAATAACTGCACAATCT]
[+] EMBL BM610867 [AATATGTTAATAATAAGTGTGGGGAAAAGAAAAAGAACAACATACAATTCGACATTCGAAGCATAATGATATTTTACAAATTTTCAGTTACTTCAGATTAAATAATGTTTAAGCGTAGATGATATTAATACAAAAAGAAACAAAAAACAAGAGAGAAACGTAGAAGTGCAATGGGAAATGCAGAGGAAAATATGACACTTGTGTCTCAGTTTTTATATAACTCTCTGTCTCTCTCTCTCTCTCTCTTTTAACAACTATTAACAACTACTACCGAAAGCATATCAAGTTGACAAGCTACATAAAATTTAAAACTAACTTAAAAAACACACACACACA TAAGACATGAGAGAAACCCATTGCGAGTAATCACTTGGAAAGCTTTAGCATATAACTACTACTACACAAAACTCCTCCCCCTTATTTGTGATAAAATGATTAAAAAAGCATGAAAATTGGGTGCAAATAGAAGAGGAAAAAGAGAAGCGAATTAATAAAATCTGATAAAAGAAAAACTCTCCATATTAGTAGATTTGTGCATCCCTTTAAAACAGCGGGCTAGAGAGCGAGCGACACGAGCAAG ]
[+] EMBL BX628086 [ AGAGAGAAACGTAGAAGTGCAATGGGAAATGCAGAGGAAAATATGACACTTGTGTCTC GATTTTATATAACTCTCTG TCTCTCTCTCTCTCTTTTAACAACTATTAACAACTACTACCGAAAGCATATCAAGTTGACAAGCTACATAAAATTTAAAACTAACTTAAAAAA AAACACACACACTAAGACATGAGAGAAACCCATTGCGAGTAAGCACTTGGAAAGCTTTAGCATATAACTACTACTACACAAAACTCCTCCCCCTTATTTGTGATAAAATGATTAAAAAAGCATGAAAATTGGGTGCAAATAGAAGAGGAAAAAGAGAAGCGAATTAATAAAATCTGATAAAAGAAAAACTCTCCATATTAGTAGATTTGTGCAT CCTTTAAAACAGCGGGCTAGAGAGCGGGCGACACGAGCAAGCAAGCAGCAAGCGAAAACTCGTAAACTTTTATATAAGACTTTTCCAATTTAAAAATAAATTAAAGAAAATTAATATTAAAAAAAAGAGAAGTTTATTAGTATATGGAGATTAAAGCAGAAAACTGGTAGAAAAGAAAAACGAAG ]
[+] EMBL BX627907 [ GAGAGAAACCCATTGCGAGTAAGCACTTGGAAAGCTTTAGCATATAACTACTACTACACAAAACTCCTCCCCCTTATTTGTGATAAAATGATTAAAAAAGCATGAAAATTGGGTGCAAATAGAAGAGGAAAAAGAGAAGCGAATTAATAAAATCTGATAAAAGAAAAACTCTCCATATTAGTAGATTTGTGCAT CCTTTAAAACAGCGGGCTAGAGAGCGGGCGACACGAGCAAGCAAGCAGCAAGCGAAAACTCGTAAACTTTTATATAAGACTTTTCCAATTTAAAAATAAATTAAAGAAAATTAATATTAAAAAAAAGAGAAGTTTATTAGTATATGGAGATTAAAGCAGAAAACTGGTAGAAAAGAAAAACGAAGGCCAAAAATAATTAAAAACGCATAACTTTACTAACACTCTCTCTCTCTCTCTCTTTCAATCGTCCATGTTTGCGCTAGAGAACATTGGCGTGCGATGAGCGAAAGCTTTTAAGCTTGTGCGCGAGCGCGCGCATATGTTTGCGTGTTTGCATGCGCAACGCCGTCTCGAAATTTAAACATTTCTACAATTAAAAATACACAATTATGAGCAAAAGCAAGCGATAAGATGCACTAAAAAAAGCACAATTTTTATAATAACTGCACAATCT]
consensusID : consensus_7002#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence
[CGTAACGGCATTGTTGCATTGTTAAACCTAGAGTCAGTGTACCTCTCTTTCAATCGTCCATGTTTGCGCTAGAGAACATTGGCGTGCGATGACCGAAAGCTTTTAAGCTTGTGCGCGAGCGCGCGCATATGTTTGCGTGTTTGCATGCGCAACGCCGTCTCGAAATTTAAACATTTCTACAATTAAAAATACACAATTATGAGCAAAAGCAAGCGATAAGATGCACTAAAAAAAGCACAATTTTTATAATAACTGCACAATCT-CTTTCCATCTGTCTTC-TTGTTCGCTTTGTGTCTCCTTCATCATCACTCTTTAATCGATCTGTAACATTCGCACAGCTCAAGCACGCACAAACACAATTTTAAAGGTGCATTTTTCCCACTCAACTCAAATCGTTGTAGTATTTAAGTAAAGGAGAAAGCGAAAAAAAAAAGAGTTTATCCTTGTAAGTGAATTAATAGCAATAACCGGAGCACGGGTGTTGTTTTGTGTGGATTGAAAGGATCTGATACACGGTGGT---GTGGTTGTTGCTGTCCTCTGTCCCTAGATCGCACGTCCACGTGGCGTAAAGGGGCGCGCATTGCACTTATGCGAATATTACGCGCCCGTTCGACCCGCTCCCCCTCCCCCCAGAGACAATCAGGCGCGT]
[+] EMBL BX609019 [CGTAACGGCATTGTTGCATTGTTAAACCTAGAGTCAGTGTACCTCTCTTTCAATCGTCCATGTTTGCGCTAGAGAACATTGGCGTGCGATGACCGAAAGCTTTTAAGCTTGTGCGCGAGCGCGCGCATATGTTTGCGTGTTTGCATGCGCAACGCCGTCTCGAAATTTAAACATTTCTACAATTAAAAATACACAATTATGAGCAAAAGCAAGCGATAAGATGCACTAAAAAAAGCACAATTTTTATAATAACTGCACAATCT CTTTCCATCTGTCTTC TTGTTCGCTTTGTGTCTCCTTCATCATCACTCTTTAATCGATCTGTAACATTCGCACAGCTCAAGCACGCACAAACACAATTTTAAAGGTGCATTTTTCCCACTCAACTCAAATCGTTGTAGTATTTAAGTAAAGGAGAAAGCGAAAAAAAAAAGAGTTTATCCTTGTAAGTGAATTAATAGCAATAACCGGAGCACGGGTGTTGTTTTGTGTGGATTGAAAGGATCTGATACACGGTGGT GTGGTTGTTGCTGT ]
[+] EMBL BX612988 [ gcttTGCGATGAGCGAAAGCTTTTAAGCTTGTGCGCGAGCGCGCGCATATGTTTGCGTGTTTGCATGCGCAACGCCGTCTCGAAATTTAAACATTTCTACAATTAAAAATACACAATTATGAGCAAAAGCAAGCGATAAGATGCACTAAAAAAAGCACAATTTTTATAATAACTGCACAATCTCCTTTCCATCTGTCTTCTTTGTTCGCTTTGTGTCTCCTTCATCATCACTCTTTAATCGATCTGTAACATTCGCACAGCTCAAGCACGCACAAACACAATTTTAAAGGTGCATTTTTCCCACTCAACTCAAATCGTTGTAGTATTTAAGTAAAGGAGAAAGCGAAAAAAAAAAGAGTTTATCCTTGTAAGTGAATTAATAGCAATAACCGGAGCACGGGTGTTGTTTTGTGTGGATTGAAAGGATCTGATACACGGTGGTGTGGTGGTTGTTGCTGTCCTCTGTCCCTAGATCGCACGTCCACGTGGCGTAAAGGGGCGCGCATTGCACTTATGCGAATATTACGCGCCCGTTCGACCCGCTCCCCCTCCCCCCAGAGACAATCAGGCGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7002#1 --------------AATATGTTAATAATAAGTGTGGGGAAAAGAAAAAGAACAACATACA 46
consensus_7002#2 ------------------------------------------------------------
consensus_7002#0 AATTCCCCGAGATTAACGGGCTAAGAGCGGGCGACACGAGCAGCAAGC-ANCAAGCGAAA 59
consensus_7002#1 ATTCGACATTCGAAGCATAATGATATTTTACAAATTTTCAGTTACTTCAGATTAAATAAT 106
consensus_7002#2 ------------------------------------------------------------
consensus_7002#0 ACTCGTAAACTTTTATATAA-GACTTTTCCAATAATAAAAATAAATTAAAGAAAATTAAT 118
consensus_7002#1 GTTTAAGCGTAGATGATATTA-ATACAAAAAGAAACAAAAAACAAGAGAGAAACGTAGAA 165
consensus_7002#2 ------------------------------------------------------------
consensus_7002#0 ATTAAAAAAAAGAGAAGTTTATATAGTATATGGAGATTAAAGCAGAAAACTGGTAGAACA 178
consensus_7002#1 GTGCAATGGGAAATGCAGAGGAAAAT-ATGACACTTGTGTCTCGTTTTTATATAACTCTC 224
consensus_7002#2 -------------------------C-GTAACGGCATTGTTGCATTGTTA---AACCTAG 31
consensus_7002#0 AGAAACAACGAAGGCCAAAANATAATTAAAAAACGCATAACTATATACTAAACACTACTC 238
* * * ** *
consensus_7002#1 TGTCTCTCTCTCTCTCTTTTAACAAC-TATTAACAACTACTACC--GAAAGCATAT-CAA 280
consensus_7002#2 AGTCAGTGTACCTCTCTTT---CAAT-CGTCCATGTTTGCGCTA--GAGAACATTG-GCG 84
consensus_7002#0 TACTACTCTACTACTACTATAACAATACGTCCATGTNTGCGGCTAGGAGAACATTGGCNG 298
* * ** * *** * * * * ** * ***
consensus_7002#1 GTTGAC-AAGCTACATAAA---ATTTAAAACTAACTTAAAAA-AACACACACACATAAGA 335
consensus_7002#2 TGCGAT-GACCGA---AAG---CTTTTAAGCTTGTGCGCGAG-CGCGCGCATATGTTTG- 135
consensus_7002#0 TGCGATTGAGCGGAACNAGCCTATNTAAGCTNTGTGCGCGAGGCGCGCCGGCATAATTGT 358
** * * * * * * * * * * *
consensus_7002#1 CATGAGAGAAACCCATTGCGAGTAAG---CACTTGGAAAGCTT-----TAGCATATAACT 387
consensus_7002#2 CGTGTTTGCA------TGCGCAACGC---CGTCTCGAAA-TTT-----AAACATTT--CT 178
consensus_7002#0 TATGGGCGGTGGTACTTGCGCGTAGCGCCCAACCGGCCGGTTCGTCGGAAAAATTTCAGA 418
** * **** * * * * ** *
consensus_7002#1 ACTACT-----ACACAAAACTCCTCCCCCTTATT--TGTGATAAAATGATTAAAAAAGCA 440
consensus_7002#2 ACAATT-----AAAAATA----------CACAAT--TATGAGCAAA------AGCAAGCG 215
consensus_7002#0 ACGATTTACTTAACCACAGTGTAAAACACATAACAACACAATATATTGAAGGANAGNACA 478
** * * * * * * * * * * *
consensus_7002#1 TGAAAATTGGGTGCAAATAGAAGAGGAAAAAGAGAAGCGAATTAATAAAATCTGATAAAA 500
consensus_7002#2 ATAAGAT---GCACTAAAAAAAGCACAATTTTTATAATAACTGCACAATCTCTTTCCA-- 270
consensus_7002#0 GCCAAAGCGGATCACACGAATTGCACTCAAAGAACACAAGGCCAACCAATTCTC-CNATA 537
* * * * * * * * *** *
consensus_7002#1 GAAAAACTCTCCATATTAGTAGATTTGTGCATCCTTTAAAACAGCGGGCTAGAGAGCGGG 560
consensus_7002#2 ------TCTGTCTTCTTGTTCGCTTTGTGTCTCCTTCATCATCACTCTTTAATCGATCTG 324
consensus_7002#0 AACTAACGCTTGGCGCCNAATTCTTCCTTTTTCCCGAGTCGTGGTCCTTTCCTTGGTGNC 597
** * *** *
consensus_7002#1 CGACACGAG-----CAAGCAAGCAGCAAGCGAAAACTCGTAAACTTTTATATAAGACTTT 615
consensus_7002#2 TAACATTCG-----CACAGCTCAAGCACGCACAAACAC---AATTTTAAAGGTGCATTTT 376
consensus_7002#0 GGCCTCGGGGTGGTCNTCCCCTTTCCATCCGANTCCACCTCCCTCTTTTCACTCCGGATC 657
* * * ** * * * ** *
consensus_7002#1 TCCAATTTAA---AAATA--------AATTAAAGAAAATTAATATTAAAAAAAAGAGAAG 664
consensus_7002#2 TCCCACTCAACTCAAATCGTTGTAGTATTTAAGTAAAGGAGAAAGCGAAAAAAAAAAGAG 436
consensus_7002#0 GCTNGTTCAGACCATTTCCGGCCCCGAGCTCCACAGGCCGNCCGGCGCGAAAACGCGCAG 717
* * * * * * * * **** **
consensus_7002#1 TTTATTAGTATAT--GGAGATTAAAGCAGA----AAACTGGTAGAAAAGAAAAACGAAGG 718
consensus_7002#2 TTTATCCTTGTAA--GTGAATTAATAGCAA----TAACCGGAGCACGGGTGTTGTTTTGT 490
consensus_7002#0 CGTCTCNCCAGAGAGNGGGGTTGGCGCTTTCTCTNTCCCCCCACGTCCGCGCGTTTCCAG 777
* * * ** * *
consensus_7002#1 CCAAAAATAATTAAAAACGCATA-ACTTTACTAACA-CTCTCTCT-CTCTCTCTCTTTCA 775
consensus_7002#2 GTGGATTGAA--AGGATCTGATACACGGTGGTGTGG-TTGTTGCTGTCCTCTGTCCCTAG 547
consensus_7002#0 GCTGCTCCGGTCTGGTTCGGTCNCNTTTCGTCGCGGTCTCCCCCTNCGGGCCGCACCNGG 837
* * ** *
consensus_7002#1 ATCGTCCATGTTTGCGCTAGAGAACATTGGCGTGCGATGAGC----GAAAGC--TTTTAA 829
consensus_7002#2 ATCG--CACGTCCACG-TGGCGTAAAGGGGCGCGCATTGCAC----TTATGC--GAATA- 597
consensus_7002#0 GNCCTGGATCACGCCACCGCNCAGCGCCAGTNCCCATTCCGCCTCTTGGTGCCGGTNTGT 897
* * * * * * * ** *
consensus_7002#1 GCTTGTGCGCGAG-CGCGCGCA-TATGTTTGCGTGTTTGCATGCGCAACGCCGTCTCGAA 887
consensus_7002#2 --TTACGCGCCCG-TTCG---A-CCCGCTCCCCCTCCCCCCAGAGACAATCAGGCGCGT- 649
consensus_7002#0 CCTTTTTCACTTATCGCGCCGACTGTACCCGGGCGNCGTCACGCGCGNGTTGTTNGCTCC 957
** * * ** * * * * *
consensus_7002#1 ATTTAAACATTTCTACAATTAAAAATACACAATTATGAGCAAAAGCAAGCGATAAGATGC 947
consensus_7002#2 ------------------------------------------------------------
consensus_7002#0 AGGGTGGCGCTTCGACANCGCGGGGTTCTTGGCGTNNCCCCGGGTGGGGTCGTNGGCTGG 1017
consensus_7002#1 AC--TAAAAAAAGCACAATTTTTATAATAACTGCACAATCT------------------- 986
consensus_7002#2 ------------------------------------------------------------
consensus_7002#0 GGCGTAGGACGGGGTTGGTCNTCCTGGTCCCGNAGCANTTCGGGCCGNTCCCNCGGTGGT 1077
consensus_7002#1 ------------------------------------------------------------
consensus_7002#2 ------------------------------------------------------------
consensus_7002#0 CGTCTCACAGGGGCCGNNGCGCATTTTGCACGTTNATTTCGCGCGACTTTCTACTCGGCC 1137
consensus_7002#1 ------------------------------------
consensus_7002#2 ------------------------------------
consensus_7002#0 CGTTGCTCGTGCCCCCCTTCCCGTCGNAGCCTCGCG 1173
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||