These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 794 fasta sequence [CCGACGAACCGTCGCATCTAGCGGACACACA-AAAGAGCGGACGCAGAGCGCGCGAGAAACAAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGGCTAGCAGCCGGAAGCAAA-AGCAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGGTGCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTATGTGTGTATACGAAGGCAAGTGTGCTGTATCGCGTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAAAGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTAGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAACCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTGGCAAATCTGGCAAGCGGCTTAAGCAAAAACTCGGGTACAAAAGGCGCTCGATTCAACGGTCCGCCCGACAGTATAGCGTGTGTAACGTGTGAGTGCTCTGGGAGCGTAGCCACGGGAAAAAAAGGACACTCGCGCCATTGGAAGGATCGTTGTGGTACCGGTCAGGACACACAGAAACATTTTGGGTTGCGTGCA] [+] EMBL BM603115 [CCGACGAACCGTCGCATCTAGCGGACACACA AAAGAGCGGACGCAGAGCGCGCGAGAAACAAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGGCTAGCAGCAGGAAGCAAATAACAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGGTGCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTATGTGTGTATACGAAGGCAAGTGTGCTGTATCGCGTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAAAGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTAGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAACCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTGGCAAATCTGGCAAGCGGCTTAAGCAAAAACTCGGG ] [+] EMBL BX619163 [ gctGAACCGTCGCATCTAGCGGACACACACAAAGAGCGGCCGCAGAGCGCGCGAGAAACAAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGGCTAGCAGCCGGAAGCAAA AGCAACCAGnt ] [+] EMBL BX623152 [ CGCGCGAGAAACAAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGGCTAGCAGCCGGAAGCAAA AGCAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTGTGTGTGTATACGAAGGCAAGTGTGCGGTATCGCTTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTGGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAATCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTAGCAAATCTGGCAAGCGGCTTAAGC AAAACTCGGGTACAAAAGGCGCTCGATTCAACGGTCCGCCCGACAGTATAGCGTGTGTAACGTGTGAGTGCTCTGGGAGCGTAGCCACGGGAAAAAAAGGACACTCGCGCCATTGGAAGGATCGTTGTGGTACCGGTCAGGACACACAGAAACATTTTGGGTTGCGTGCA] consensusID : consensus_7007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [AGCAGAATCGCCCAGGCTTATACACAAAAGAGCGGCGCAGNCCGCGCGAGTAAACAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGTGCTAGCAGCCGGAAGCAAAGCAACCAGTACAAACTCAAACAAGAACACCAAGTTACCAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTAAGTGTGTGTGTATACGAAGGCAAGTNNTGCGGTCATCGCTTTGCGACCATTTCGAAGGTGACTTANTCGTNGGCGTTACACACTTTGACTTCGCAGTGTAGTGANACGAACCGACCAGTGACATTAGCAAGGACANAAGGCCCCGATACCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAACAGGATACACAGGTCACCCGCACCTAGACACCCATNGGCTCGGTCGGTGCTGACCGCGAAGGCGTCGCGCACGACCCGAAAATCGGGCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCG] [+] EMBL AL929896 [AGCAGAATCGCCCAGGCTTATACACAAAAGAGCGGCGCAGNCCGCGCGAGTAAACAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGTGCTAGCAGCCGGAAGCAAAGCAACCAGTACAAACTCAAACAAGAACACCAAGTTACCAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTAAGTGTGTGTGTATACGAAGGCAAGTNNTGCGGTCATCGCTTTGCGACCATTTCGAAGGTGACTTANTCGTNGGCGTTACACACTTTGACTTCGCAGTGTAGTGANACGAACCGACCAGTGACATTAGCAAGGACANAAGGCCCCGATACCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAACAGGATACACAGGTCACCCGCACCTAGACACCCATNGGCTCGGTCGGTGCTGACCGCGAAGGCGTCGCGCACGACCCGAAAATCGGGCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCG] consensusID : consensus_7007#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [CACGCGTCCGGCCGGAAGCAAAAGCAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTGTGTGTGTATACGAAGGCAAGTGTGCGGTATCGCTTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTGGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAATCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTAGCAAATCTGGCAAGCGGCTTAAGCAAAACTCGGGTACAAAAGGCGCTCGATTCAACGGTCCGCCCGACAGTATAG] [+] EMBL BM596582 [CACGCGTCCGGCCGGAAGCAAAAGCAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTGTGTGTGTATACGAAGGCAAGTGTGCGGTATCGCTTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTGGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAATCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTAGCAAATCTGGCAAGCGGCTTAAGCAAAACTCGGGTACAAAAGGCGCTCGATTCAACGGTCCGCCCGACAGTATAG] consensusID : consensus_7007#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [GACGCGCCGTACGGCGTCGAGGCAAGAATCCGACGATGATCAGTTGGGTTACACACTTTTGACNTTCCGCGCCAGTGTAGTGAACGAAACGGACCAGGTGACATTATCCAGGGCAAATGCCCCGTTCCGTATAAACTCGGTGTGGGGAAACGCACAAGTTCCGCACATCNCAAGGAGTACACGGTCACCCGCAANCTACCCCATTGGCTCGCGTCGGTGCGTGACGCGAAAGGCTCGCGCACGAACCGAAAATCGGGGCCGAAACCGAAGGGGAAGTGTTACGGATCGAGCAGCGTGTTTGGCAAACAGGCCGCGGGAAAGCGCACGCTTGTGCCTAGCAAATCTGGCAAGCGGGTTAAGCAAAACTCGGGTACAAAACGGCGCTCGATTCAACGGNCCGGCCGAACAGTATAGCGTGTGTAACGTGTTGAGTGCTCTGGGAGCGTAGCCACGGGGGACAACAACAAGGACACTCGCGGCCATT] [+] EMBL BX469080 [GACGCGCCGTACGGCGTCGAGGCAAGAATCCGACGATGATCAGTTGGGTTACACACTTTTGACNTTCCGCGCCAGTGTAGTGAACGAAACGGACCAGGTGACATTATCCAGGGCAAATGCCCCGTTCCGTATAAACTCGGTGTGGGGAAACGCACAAGTTCCGCACATCNCAAGGAGTACACGGTCACCCGCAANCTACCCCATTGGCTCGCGTCGGTGCGTGACGCGAAAGGCTCGCGCACGAACCGAAAATCGGGGCCGAAACCGAAGGGGAAGTGTTACGGATCGAGCAGCGTGTTTGGCAAACAGGCCGCGGGAAAGCGCACGCTTGTGCCTAGCAAATCTGGCAAGCGGGTTAAGCAAAACTCGGGTACAAAACGGCGCTCGATTCAACGGNCCGGCCGAACAGTATAGCGTGTGTAACGTGTTGAGTGCTCTGGGAGCGTAGCCACGGGGGACAACAACAAGGACACTCGCGGCCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7007#0 CCGACGAACCGTCGCATCTAGCGGACACACAAAAGAGCGGACGCAGAGCGCGCGAGAAAC 60 consensus_7007#1 ----AGCAGAATCGC-CCAGGCTTATACACAAAAGAGCGG-CGCAGNCCGCGCGAGTAAA 54 consensus_7007#2 ------------------------------------------------------------ consensus_7007#3 ----------------------------------GACGCGCCGTACGGCGT-CGAGGCAA 25 consensus_7007#0 AAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTG 120 consensus_7007#1 CAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTG 114 consensus_7007#2 ------------------------------------------------------------ consensus_7007#3 GAATCCGACGATGATCAGTTGGGTT---ACACACTTTTGACNTTCCGCGCCAGTGTAGTG 82 consensus_7007#0 TGTGGTTGGTGAATATTTCAAGCGACGTCATT-AGAGAAAG-GCTAGCAGCCGGAAGCAA 178 consensus_7007#1 TGTGGTTGGTGAATATTTCAAGCGACGTCATT-AGAGAAAGTGCTAGCAGCCGGAAGCAA 173 consensus_7007#2 ---------------------------------------CACGCGTCCGGCCGGAAGCAA 21 consensus_7007#3 AACGA------AACGGACCAGGTGACATTATCCAGGGCAAATGCCCCGTTCCGTA--TAA 134 ** *** * ** consensus_7007#0 AAGCAACCAGTACAAACTCAAACAAGAACAC-AAGTTACAAACGGT-TACAATCGGTGCG 236 consensus_7007#1 A-GCAACCAGTACAAACTCAAACAAGAACACCAAGTTACCAACGGT-TACAATCGTTTCG 231 consensus_7007#2 AAGCAACCAGTACAAACTCAAACAAGAACAC-AAGTTACAAACGGT-TACAATCGTTTCG 79 consensus_7007#3 ACTCGGTGTGGGGAAACGC--ACAAGTTCCGCACATCNCAAGGAGTACACGGTCACCCGC 192 * * * **** * ***** * * * * * ** ** ** consensus_7007#0 AACTGATAGTTTCAGTAGGTTCGGGTGTT-GTATGTGTGTATACGAA-GGCAAGTGT-GC 293 consensus_7007#1 AACTGATAGTTTCAGTAGGTTCGGGTGTAAGTGTGTGTGTATACGAA-GGCAAGTNNTGC 290 consensus_7007#2 AACTGATAGTTTCAGTAGGTTCGGGTGTT-GTGTGTGTGTATACGAA-GGCAAGTGT-GC 136 consensus_7007#3 AANCTAC----CCCATTGGCTCG--CGTCGGTGCGTG---ACGCGAAAGGCTCGCGCACG 243 ** * * * ** *** ** ** *** * **** *** * consensus_7007#0 TGT-ATCGCGTTGCGACCATTTCGAAGGTGATT--ATCGTTGGCGTTACACACTTTGACT 350 consensus_7007#1 GGTCATCGCTTTGCGACCATTTCGAAGGTGACTTANTCGTNGGCGTTACACACTTTGACT 350 consensus_7007#2 GGT-ATCGCTTTGCGACCATTTCGAAGGTGATT--ATCGTTGGCGTTACACACTTTGACT 193 consensus_7007#3 AACCGAAAATCGGGGCCGAAACCGAAGGGGAA---GTGTTACGGATCGAGCAGCGTGTTT 300 * * * * ****** ** * * * * ** ** * consensus_7007#0 TCGCAGTGTAGTGAA-CGAACCGCACCAGTGACATTAGCAAGGACAAA--GCCCCG-TCC 406 consensus_7007#1 TCGCAGTGTAGTGANACGAACCG-ACCAGTGACATTAGCAAGGACANAAGGCCCCGATAC 409 consensus_7007#2 TCGCAGTGTAGTGAA-CGAACCGCACCAGTGACATTAGCAAGGACAAA--GCCCCG-TCC 249 consensus_7007#3 GGCAAACAGGCCGCGGGAAAGCGCACGCTTGTGCCTAGCAAATCTGGCAAGC--GGGTTA 358 * * ** ** ** ** ****** ** * * consensus_7007#0 CGTCTAGCTCGGTGTGGGAAAAGCAAAGTTCGAATCAA-AGGATACAC-GGTCACCCGCA 464 consensus_7007#1 CGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAACAGGATACACAGGTCACCCGCA 469 consensus_7007#2 CGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAA-AGGATACAC-GGTCACCCGCA 307 consensus_7007#3 AGCAAAACTCGG-GTACAAAACG--GCGCTCGATTCAA-CGGNCCGGCCGAACAGTATAG 414 * * ***** ** *** * * **** **** ** * * ** consensus_7007#0 CCTA--CCCCCATTAGCTCGGTCGGTGCTGAC-GCGAAGGC-TCGCGCACGACCCGAAAA 520 consensus_7007#1 CCTAGACACCCATNGGCTCGGTCGGTGCTGACCGCGAAGGCGTCGCGCACGACCCGAAAA 529 consensus_7007#2 CCTA--CCCCCATTGGCTCGGTCGGTGCTGAC-GCGAAGGC-TCGCGCACGACCCGAAAA 363 consensus_7007#3 CGTG---TGTAACGTGTTGAGT--GCTCTGGGAGCGTAGCCACGGGGGACAA--CAACAA 467 * * * * * ** * *** *** ** * * * ** * * * ** consensus_7007#0 CCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCG 580 consensus_7007#1 TCGGGCC-GAAACCGAAGGGAAGGTTACGGATCGAGCAGCG------------------- 569 consensus_7007#2 TCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCG 423 consensus_7007#3 GGACACTCGCGGCCATT------------------------------------------- 484 * * ** consensus_7007#0 GAAGCGCACGCTTGGCCTGGCAAATCTGGCAAGCGGCTTAAGCAAAAACTCGGGTACAAA 640 consensus_7007#1 ------------------------------------------------------------ consensus_7007#2 GAAGCGCACGCTTGGCCTAGCAAATCTGGCAAGCGGCTTAAGCAAAACTCGGGTACAAAA 483 consensus_7007#3 ------------------------------------------------------------ consensus_7007#0 AGGCGCTCGATTCAACGGTCCGCCCGACAGTATAGCGTGTGTAACGTGTGAGTGCTCTGG 700 consensus_7007#1 ------------------------------------------------------------ consensus_7007#2 GGCGCTCGATTCAACGGTCCGCCCGACAGTATAG-------------------------- 517 consensus_7007#3 ------------------------------------------------------------ consensus_7007#0 GAGCGTAGCCACGGGAAAAAAAGGACACTCGCGCCATTGGAAGGATCGTTGTGGTACCGG 760 consensus_7007#1 ------------------------------------------------------------ consensus_7007#2 ------------------------------------------------------------ consensus_7007#3 ------------------------------------------------------------ consensus_7007#0 TCAGGACACACAGAAACATTTTGGGTTGCGTGCA 794 consensus_7007#1 ---------------------------------- consensus_7007#2 ---------------------------------- consensus_7007#3 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||