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Anopheles gambiae
cluster # 7014 cluster # 7014       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7014#0 length = 1046 sequences # 5  
consensus_7014#1 length = 390 sequences # 1  

consensusID : consensus_7014#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1046
fasta sequence
                              [AGGGCACCCGCTCTTCCGTTTTCTGTTTAATTTCTGTTCAGTTTCGCAATTGTTTCCCATCGATTAATTTCCTTCAGCTTCACGCACACGACGGCAGAAAAGGA-TCGTTTAACATCTCCATCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACGGTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAACGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAACGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGTCGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCGACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCGATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGGCCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCC-AACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATTGCCACCGGCGCGATACCAGTNNCTGGCGCGGCGACGGTA]

[+] EMBL AGA282970            [AGGGCACCCGCTCTTCCGTTTTCTGTTTAATTTCTGTTCAGTTTCGCAATTGTTTCCCATCGATTAATTTCCTTCAGCTTCACGCACACGACGGCAGAAAAGGA TCGTTTAACATCTCCATCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACGGTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAACGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAACGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGTCGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCGACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCGATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGGCCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACG CCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTAT                                                                                                                                                                                             ]
[+] EMBL AGA284772            [                                                                                              cgtcgacGGATTGGTTTAACATCTCCATCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACGGTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAACGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAACGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGTCGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCGACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AGA281363            [                                                                                                                                                                                                                                                                                                                                                                                                                 ATCGCGCATGAAACGGGCCGACTCGTACGACATCTAATACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCGATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGGCCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCTTACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATTGCCACCGGCGCGATACCAGTNNCTGGCGCG         ]
[+] EMBL BM645460             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccgGATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGGCCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCC AACAGTGGCCCGATGCATTTCCGCCTCTC                                                                   ]
[-] EMBL AGA283476            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCC AACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACCGGCGCGATACCAGTGCCTGGCGCGGCGACGGTA]


>consensus_7014#0 AGGGCACCCGCTCTTCCGTTTTCTGTTTAATTTCTGTTCAGTTTCGCAATTGTTTCCCAT CGATTAATTTCCTTCAGCTTCACGCACACGACGGCAGAAAAGGATCGTTTAACATCTCCA TCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACG GTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAA CGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAA CGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGT CGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCG ACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCG ATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGG CCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGA TCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACT ACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCAT TCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGC CCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGG GCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCA ACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCC CGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATTGCCACCGGCGCGA TACCAGTNNCTGGCGCGGCGACGGTA



consensusID : consensus_7014#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence
                              [CCGGTGAATTGAACTTAGAGCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACCGGCGCGATACCAGTGCCTGGCGCGGCGACG]

[+] EMBL BM654371             [CCGGTGAATTGAACTTAGAGCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACCGGCGCGATACCAGTGCCTGGCGCGGCGACG]


>consensus_7014#1 CCGGTGAATTGAACTTAGAGCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGC GGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCG GAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGT GGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGC TCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAAC AGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACC GGCGCGATACCAGTGCCTGGCGCGGCGACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7014#0      AGGGCACCCGCTCTTCCGTTTTCTGTTTAATTTCTGTTCAGTTTCGCAATTGTTTCCCAT 60
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      CGATTAATTTCCTTCAGCTTCACGCACACGACGGCAGAAAAGGATCGTTTAACATCTCCA 120
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      TCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACG 180
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      GTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAA 240
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      CGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAA 300
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      CGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGT 360
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      CGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCG 420
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      ACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCG 480
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      ATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGG 540
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      CCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGA 600
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      TCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACT 660
consensus_7014#1      ---------------------------------------------------CCGGTGAAT 9
                                                                          *    * *

consensus_7014#0      ACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCAT 720
consensus_7014#1      TGAACTTAGAG--CGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCAT 67
                        ***  * **  ***********************************************

consensus_7014#0      TCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGC 780
consensus_7014#1      TCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGC 127
                      ************************************************************

consensus_7014#0      CCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGG 840
consensus_7014#1      CCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGG 187
                      ************************************************************

consensus_7014#0      GCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCA 900
consensus_7014#1      GCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCA 247
                      ************************************************************

consensus_7014#0      ACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCC 960
consensus_7014#1      ACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCC 307
                      ************************************************************

consensus_7014#0      CGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATTGCCACCGGCGCGA 1020
consensus_7014#1      CGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACCGGCGCGA 367
                      ********************************************** *************

consensus_7014#0      TACCAGTNNCTGGCGCGGCGACGGTA 1046
consensus_7014#1      TACCAGTGCCTGGCGCGGCGACG--- 390
                      *******  **************   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)