These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1046 fasta sequence [AGGGCACCCGCTCTTCCGTTTTCTGTTTAATTTCTGTTCAGTTTCGCAATTGTTTCCCATCGATTAATTTCCTTCAGCTTCACGCACACGACGGCAGAAAAGGA-TCGTTTAACATCTCCATCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACGGTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAACGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAACGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGTCGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCGACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCGATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGGCCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCC-AACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATTGCCACCGGCGCGATACCAGTNNCTGGCGCGGCGACGGTA] [+] EMBL AGA282970 [AGGGCACCCGCTCTTCCGTTTTCTGTTTAATTTCTGTTCAGTTTCGCAATTGTTTCCCATCGATTAATTTCCTTCAGCTTCACGCACACGACGGCAGAAAAGGA TCGTTTAACATCTCCATCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACGGTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAACGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAACGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGTCGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCGACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCGATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGGCCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACG CCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTAT ] [+] EMBL AGA284772 [ cgtcgacGGATTGGTTTAACATCTCCATCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACGGTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAACGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAACGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGTCGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCGACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAG ] [-] EMBL AGA281363 [ ATCGCGCATGAAACGGGCCGACTCGTACGACATCTAATACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCGATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGGCCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCTTACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATTGCCACCGGCGCGATACCAGTNNCTGGCGCG ] [+] EMBL BM645460 [ ccgGATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGGCCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCC AACAGTGGCCCGATGCATTTCCGCCTCTC ] [-] EMBL AGA283476 [ AGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGATCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACTACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCC AACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACCGGCGCGATACCAGTGCCTGGCGCGGCGACGGTA] consensusID : consensus_7014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CCGGTGAATTGAACTTAGAGCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACCGGCGCGATACCAGTGCCTGGCGCGGCGACG] [+] EMBL BM654371 [CCGGTGAATTGAACTTAGAGCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCATTCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGCCCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGGGCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCAACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCCCGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACCGGCGCGATACCAGTGCCTGGCGCGGCGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7014#0 AGGGCACCCGCTCTTCCGTTTTCTGTTTAATTTCTGTTCAGTTTCGCAATTGTTTCCCAT 60 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 CGATTAATTTCCTTCAGCTTCACGCACACGACGGCAGAAAAGGATCGTTTAACATCTCCA 120 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 TCACCGACCAGCAGTCCATCCTTGATGTGCTTGTCGAGACGAAGAAAATCCTCGCCGACG 180 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 GTGGGCAGCATGAATCGATCATCACGCGACTGCCACTGTGCGTAGAAATCTCACTCCAAA 240 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 CGGCCGAAGGTGGTAGCATGATATTGGAGTGCTGGACGCTGAGCATCAGGACGGACCAAA 300 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 CGAACGCACCCCAGCGCGCCAACCAGGTGATCTACAATCGTATGAGCTTGCTGCTCAAGT 360 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 CGCTACTCTCTGTCACACGTGTTACACCGGCGTACCGCGTATCGCGCATGAAACGGGCCG 420 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 ACTCGTACGACATCTACTACCGCATCTATACAGGCGAGCCCCAGACGAATCAGTTGGGCG 480 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 ATGGTTACAACCAGGTACGCGTCGGACAGTTGTGCACACAAATCGGAACGCTAAACATGG 540 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 CCGTGGCCTACCGGACGAAGATTACGTTCTCGCCAACGCAAACCGGACGCGACAACACGA 600 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 TCATGCTGAAGAGTGATCACTTCCTGAAGGATATCAGCCCGAAGCACGTACGCTACAACT 660 consensus_7014#1 ---------------------------------------------------CCGGTGAAT 9 * * * consensus_7014#0 ACAACAAAAAGATCGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCAT 720 consensus_7014#1 TGAACTTAGAG--CGAGAAAAAGGTGATCGATCTGGACAAACCGATGCGCTGCGGTGCAT 67 *** * ** *********************************************** consensus_7014#0 TCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGC 780 consensus_7014#1 TCGTGGATGCGTCGCGCGTCAAGAAGCCCACCGAGGACGACTACACACTGCCGGAGACGC 127 ************************************************************ consensus_7014#0 CCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGG 840 consensus_7014#1 CCCCGTTCAGCTGGCTGCTGCCGAAGCCGCGCGACGAAAGCACCTTCCGCGGTGGCGAGG 187 ************************************************************ consensus_7014#0 GCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCA 900 consensus_7014#1 GCTGCGAGGATCGGGTATCGCTCCACTCGCCCACCAACGTGGACGAAAACTGCTCCAGCA 247 ************************************************************ consensus_7014#0 ACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCC 960 consensus_7014#1 ACGCGAACAATCTCAACAACAACAACGCCAGCAAAGGCTCGTACGAGTCCAACAGTGGCC 307 ************************************************************ consensus_7014#0 CGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATTGCCACCGGCGCGA 1020 consensus_7014#1 CGATGCATTTCCGCCTCTCTCAGTCGCCCAAGAGCGGCGACGCGATCGCCACCGGCGCGA 367 ********************************************** ************* consensus_7014#0 TACCAGTNNCTGGCGCGGCGACGGTA 1046 consensus_7014#1 TACCAGTGCCTGGCGCGGCGACG--- 390 ******* ************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||