These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 911 fasta sequence [CCGGTTGGTTTGTGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGTGACTCTGGAGGCCCAGTGGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAAGGATGCGGTGCGGGATATTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATTAAGGCAACGATTGCAGCAAATAGTGATTAGGAGTGACCAGTCATTCTATGTGACCATTGATTTTCACAAAAGATAAAGAAAATAATAAAGTTTTAGTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGGGGGGG] [+] EMBL BM648398 [CCGGTTGGTTTGTGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGT ] [+] EMBL BM655765 [ ccgGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTA ] [+] EMBL CNS09KSX [ GCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTAGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGTGACTCTGGAGGCCCAGTGGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAAGGATGCGGTGCGGGATATTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATTAAGGCAACGATTGCAGCAAATAGTGATTAGGAGTGACCAGTCATTCTATGTGACCATTGATTTTCACAAAAGATAAAGAAAATAATAAAGTTTTAGTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGGGGGGG] [+] EMBL BX624255 [ CCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGGCGCATTTCGTGACGATGTNGGACTACTTCGTTTGAGGAGCCCTNNGAAGTTTGGAGAGCGTGTTAAAAAGATNGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATNAGTA ] [-] EMBL CNS09KSY [ GACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAAATTGAATTATTTTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAAAATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGTGACTCTGGAGGCCCAGTGGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAAGGATGCGGTGCGGGATATTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATTAAGGCAACGATTGCAGCAAATAGTGATTTGGAGTGACCAGTCATTTTTTGTGACCATTGA TTTCACAAAAGATAAAGAAAATAATAAAGTTTTAGT ] consensusID : consensus_7025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [TGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGTATGAAAAATATTCATTACAACAAAAAAACGAATTTACGGTTCAATATTTTTAACATAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAGTAAGGCTACAGGCTAATGTGACAACAGTGACGTGATGTCGTGGTACATTGATCATCTCGGTATCATTCCTATAGATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTANGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAANGCAANGCACTTGTAGTGTGAGTAAATAAT] [+] EMBL BX627017 [TGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGTATGAAAAATATTCATTACAACAAAAAAACGAATTTACGGTTCAATATTTTTAACATAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAGTAAGGCTACAGGCTAATGTGACAACAGTGACGTGATGTCGTGGTACATTGATCATCTCGGTATCATTCCTATAGATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTANGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAANGCAANGCACTTGTAGTGTGAGTAAATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7025#0 CCGGTTGGTTTGTGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGT 60 consensus_7025#1 -----------------------------------------TGTTTCTCAGCGGCATTGT 19 ******************* consensus_7025#0 GCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACC 120 consensus_7025#1 GCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACC 79 ************************************************************ consensus_7025#0 GATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGT 180 consensus_7025#1 GATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGT 139 ************************************************************ consensus_7025#0 AAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACA 240 consensus_7025#1 AAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACA 199 ************************************************************ consensus_7025#0 CTGTGTTAAAAGG----------------------------------------------- 253 consensus_7025#1 CTGTGTTAAAAGGTATGAAAAATATTCATTACAACAAAAAAACGAATTTACGGTTCAATA 259 ************* consensus_7025#0 ---------------AATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTT 298 consensus_7025#1 TTTTTAACATAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTT 319 ********************************************* consensus_7025#0 ACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAA---------- 348 consensus_7025#1 ACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAGTAAGGCTAC 379 ************************************************** consensus_7025#0 ------------------------------------------------------------ consensus_7025#1 AGGCTAATGTGACAACAGTGACGTGATGTCGTGGTACATTGATCATCTCGGTATCATTCC 439 consensus_7025#0 -----ATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCT 403 consensus_7025#1 TATAGATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCT 499 ******************************************************* consensus_7025#0 TTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAAT 463 consensus_7025#1 TTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAAT 559 ************************************************************ consensus_7025#0 GCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATA 523 consensus_7025#1 GCCACACTGACACTTGTCGGTANGGGTTATATTAGTAAAGATAACAAAACAACAAAAATA 619 ********************** ************************************* consensus_7025#0 ACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGAT 583 consensus_7025#1 ACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGAT 679 ************************************************************ consensus_7025#0 TTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGT 643 consensus_7025#1 TTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAANGCAANG-CACTTGTAGTG-T 737 *************************************** **** * *********** * consensus_7025#0 GACTCTGGAGGCCCAGTGGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAA 703 consensus_7025#1 GAGTAAATAAT------------------------------------------------- 748 ** * * consensus_7025#0 GGATGCGGTGCGGGATATTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATT 763 consensus_7025#1 ------------------------------------------------------------ consensus_7025#0 AAGGCAACGATTGCAGCAAATAGTGATTAGGAGTGACCAGTCATTCTATGTGACCATTGA 823 consensus_7025#1 ------------------------------------------------------------ consensus_7025#0 TTTTCACAAAAGATAAAGAAAATAATAAAGTTTTAGTGATGCAAAAAAAAAAAAAAAAAA 883 consensus_7025#1 ------------------------------------------------------------ consensus_7025#0 AAAAAAAAAAAAAGGCCACATGGGGGGG 911 consensus_7025#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||