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Anopheles gambiae
cluster # 7034 cluster # 7034       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7034#0 length = 721 sequences # 3  
consensus_7034#1 length = 611 sequences # 2  
consensus_7034#2 length = 446 sequences # 1  

consensusID : consensus_7034#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 721
fasta sequence
                              [GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAAATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGCAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG------GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANTAGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTG]

[+] EMBL BX625329             [GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAAATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGCAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG      GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCNATGAAGCCAGCGTAGTGTACTAna                                                                                                                                         ]
[+] EMBL BX628922             [                                                                         gGAC AAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGGGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGG AAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTC                                                                                            ]
[+] EMBL BX620245             [                                                                                                         CAACAGCAAACAAGCAAGGCAAAGTAGTANTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTANAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG      GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANTAGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTG]


>consensus_7034#0 GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAA ATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGC AAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATG CATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCA TTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCG ATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGC ATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAAT GGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCA GCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCATCACAGTGTCCGTCT GTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACG TGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANTAGCAAACTGCACGCG TTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCT G



consensusID : consensus_7034#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 611
fasta sequence
                              [CCGGCAACACAAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTT]

[+] EMBL BM628298             [CCGGCAACACAAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACG                                                                         ]
[+] EMBL BM592715             [        ccgAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTT]


>consensus_7034#1 CCGGCAACACAAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAG TTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAG AGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTC TTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTG TAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTC ATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGAT GCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAA GGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGT TGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTG GTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTT GTTCTCGTTTT



consensusID : consensus_7034#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence
                              [AGAATCNCCCGAGGTTTACACACATGCACTAAATATGGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGTTAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT]

[+] EMBL AL930412             [AGAATCNCCCGAGGTTTACACACATGCACTAAATATGGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGTTAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT]


>consensus_7034#2 AGAATCNCCCGAGGTTTACACACATGCACTAAATATGGAAAAAATGAATGCGTAGAAATG CCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCAT TTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGC AATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATT GTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTT CAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTGACTGAGTTCCGGCAAATC CTTTTCGCCGCGATGGCGCCTCTCGTTAAGCGTTTAATTATTATTATTTTTAAAAATTTC TTAGAACCCTCCAAACGCGTGTACAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7034#0      GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAA 60
consensus_7034#1      ------------------------------------------------------------
consensus_7034#2      ------------------------------------------------------------
                                                                                  

consensus_7034#0      ATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGC 120
consensus_7034#1      ------------CCGGCAACACAA---AAAAAAACCGCAAAATTGCAACAGCAAACAAAC 45
consensus_7034#2      ------------------------------------------------------------
                                                                                  

consensus_7034#0      AAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATG 180
consensus_7034#1      AAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATG 105
consensus_7034#2      ------------------------------------------------------------
                                                                                  

consensus_7034#0      CATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCA 240
consensus_7034#1      CATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCA 165
consensus_7034#2      ------------------------------------------------------------
                                                                                  

consensus_7034#0      TTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCG 300
consensus_7034#1      TTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCG 225
consensus_7034#2      ------------------------------------------------------------
                                                                                  

consensus_7034#0      ATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGC 360
consensus_7034#1      ATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGC 285
consensus_7034#2      ------------------------------------------------------------
                                                                                  

consensus_7034#0      ATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAA--C-ACACATACACACATGCACTAAAT 417
consensus_7034#1      ATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAAC-ACACATACACATATGCACTAAAT 344
consensus_7034#2      --------------------------AGAATCNCCCGAGGTTTACACACATGCACTAAAT 34
                                                * **     * *    ****** ***********

consensus_7034#0      AATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATAT 477
consensus_7034#1      AA-GGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATAT 403
consensus_7034#2      AT--GGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATAT 92
                      *   * ******** ************************************** ******

consensus_7034#0      GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCA------------ 525
consensus_7034#1      GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCA 463
consensus_7034#2      GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCA------ 146
                      ************************************************            

consensus_7034#0      TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 585
consensus_7034#1      TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 523
consensus_7034#2      TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 206
                      ************************************************************

consensus_7034#0      TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANT 645
consensus_7034#1      TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGT 583
consensus_7034#2      TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGT 266
                      ********************************************************** *

consensus_7034#0      AGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAAC 705
consensus_7034#1      AGCAAACTGCACGCGTTGTTCTCGTTTT-------------------------------- 611
consensus_7034#2      AGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAAC 326
                      ****************************                                

consensus_7034#0      ATGATTTGTGTGTCTG-------------------------------------------- 721
consensus_7034#1      ------------------------------------------------------------
consensus_7034#2      ATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGT 386
                                                                                  

consensus_7034#0      ------------------------------------------------------------
consensus_7034#1      ------------------------------------------------------------
consensus_7034#2      TAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT 446
                                                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)