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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 759 fasta sequence
[CCGCCCACGCGTCCGGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCAATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAATCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATTTTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGTTGTTCTTCCCTGTATCTGTAAGTGTGTATTTTTGTAAAATATTTGACTTTTGATTTCTTTCTTTTTCCAAGTTTTCCCACTTTTGTTTGGCTGTAAAAATAAATTTAAAGCCCAAGGATAACATCGCGTG]
[+] EMBL BM593735 [CCGCCCACGCGTCCGGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCAATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAATCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATTTTGTTACGGTAT ]
[+] EMBL BX615347 [ CTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCAATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAATCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATTTTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGTTGTTCTTCCCTGTATCTGTAAGTGTGTATTTTTGTAAAATATTTGACTTTTGATTTCTTTCTTTTTCCAAGTTTTCCCACTTTTGTTTGGCTGTAAAAATAAATTTAAAGCCCAAGGATAACATCGCGTG]
[+] EMBL BX614787 [ GAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGGGTGATGCAATTTAGAAACAAACACAAGAAAACTAACTAACTTATCTACAAACTATGAGTAATCACTACTAATCAATCTTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCTTAAAAAGAAATGGGAAACACTGTGTACACAATGCGTCGGAAGTGTTGCGTCTGGTTGAAATGCATTTTGGATCTACTTTAATTTTGTTACGGTATGATTTGCAATA ]
consensusID : consensus_7037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[GCAGATCGGCACGAGGAGTNAAGCAGTATAAACCAGCCAAGTGCCATCATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAAGTCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATNTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGNTGTTCTTCCCTGTATCTGTAAGTGTGTATNAGGTAAAATATGNGGACTTTCGATTTCGGTGTGTTGTGCTGTCAGGGTGCTGTNN]
[+] EMBL BX466352 [GCAGATCGGCACGAGGAGTNAAGCAGTATAAACCAGCCAAGTGCCATCATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAAGTCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATNTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGNTGTTCTTCCCTGTATCTGTAAGTGTGTATNAGGTAAAATATGNGGACTTTCGATTTCGGTGTGTTGTGCTGTCAGGGTGCTGTNN]
consensusID : consensus_7037#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[ATCGCCGAGGTATACTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGGGTCCAAATGTTGGGTGCAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGCTAATCACTACCAATCAATCCTATCGCTCTGTGCTGAGGCGAAGCAGCTAACACACTATATCCCTAAACAACGAACACTGGCGCAAACACCGTGTACACACATGCGCTCGCGCACTGTGCTTGCCGCTCCGGCTTGCACACNTGCACTTTCGGGCATCCTACCCTCTCTAACTCTCTCNCGCTCCACCCGCGCTACTGCACCTCC]
[+] EMBL AL930551 [ATCGCCGAGGTATACTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGGGTCCAAATGTTGGGTGCAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGCTAATCACTACCAATCAATCCTATCGCTCTGTGCTGAGGCGAAGCAGCTAACACACTATATCCCTAAACAACGAACACTGGCGCAAACACCGTGTACACACATGCGCTCGCGCACTGTGCTTGCCGCTCCGGCTTGCACACNTGCACTTTCGGGCATCCTACCCTCTCTAACTCTCTCNCGCTCCACCCGCGCTACTGCACCTCC]
consensusID : consensus_7037#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[CTGAAGCGGAAGCAGAATAGTATGCTAACTCCACACCAACACGCTGTATTTAATGGAAGCAATGTGTATCATTCAATCAACTGCAATCGCAGTACTGGACGTATTCGTAATAAGCAATCATTTTTTTTAGGGACGAAGCACTGTCATTTAATTGTAATATCATCAATCAAACGCGAGAGACAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCCAATTTAAAATTTGCCCAAATCATGTCACACTAACCTTACGTGTGCGCNGGAATATATGTNNTTCAAGANNCACTGTGGTCCANATGTTGGGGTGCCAAGTTCCCAGCGTAACTAAAGCTGAGCTTAGCAAACGTATATCAGAGGGGGGAAAAACNTGTANTACGATCGGA]
[+] EMBL BX619146 [CTGAAGCGGAAGCAGAATAGTATGCTAACTCCACACCAACACGCTGTATTTAATGGAAGCAATGTGTATCATTCAATCAACTGCAATCGCAGTACTGGACGTATTCGTAATAAGCAATCATTTTTTTTAGGGACGAAGCACTGTCATTTAATTGTAATATCATCAATCAAACGCGAGAGACAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCCAATTTAAAATTTGCCCAAATCATGTCACACTAACCTTACGTGTGCGCNGGAATATATGTNNTTCAAGANNCACTGTGGTCCANATGTTGGGGTGCCAAGTTCCCAGCGTAACTAAAGCTGAGCTTAGCAAACGTATATCAGAGGGGGGAAAAACNTGTANTACGATCGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7037#1 ------------------------------------------------------------
consensus_7037#2 ------------------------------------------------------------
consensus_7037#0 CCGCCCACGCGTCCGGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCA 60
consensus_7037#3 ------------------------------------------------------------
consensus_7037#1 -------GCAGATCGGCACGAGGAGTNAAGCAGTATAAACCAGCCAAGTGCCATCA-TTT 52
consensus_7037#2 ------------------------------------------------------------
consensus_7037#0 ACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCAATTT 120
consensus_7037#3 -------------------------------------------CTGAAGCGGAAGCAGAA 17
consensus_7037#1 AAATTTGCCCAAATCATGTCACACTAC-CTTACGTGTGCGCGGAATATATGTT-TTCAGA 110
consensus_7037#2 ------------ATC--GCCGAGGTATACTTACGTGTGCGCGGAATATATGTT-TTCAGA 45
consensus_7037#0 AAATTTGCCCAAATCATGTCACACTAC-CTTACGTGTGCGCGGAATATATGTT-TTCAGA 178
consensus_7037#3 TAGTATGCTAACTCCACACCAACACGCTGTATTTAATGGAAGCAATGTGTATCATTCAAT 77
* * * ** * *** * * * ****
consensus_7037#1 ACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAA 170
consensus_7037#2 ACACTG-GGTCCAAATGTTGGGTGCA-GTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAA 103
consensus_7037#0 ACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAA 238
consensus_7037#3 CAACTGCAATCGCAGTACTGGACGTA--TTC----GTAATAAGCAATCATTTTTTTTAGG 131
**** ** * * *** * * *** **** * * * ** *
consensus_7037#1 CGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAA 230
consensus_7037#2 CGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAA 163
consensus_7037#0 CGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAA 298
consensus_7037#3 GACGAAGCACTGTCATTTAAT-TGTAATATCATCAATCAAACGCGAGAGA--CAGCGAGA 188
* ** * ** **** ** *** * ***** ** *
consensus_7037#1 TGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCT 290
consensus_7037#2 TGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTAT-GCCT 222
consensus_7037#0 TGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCT 358
consensus_7037#3 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAACGGGAAAAAACAGCA------ 242
** ** * * * * * * * * * * *** * * * * *
consensus_7037#1 TTTAAAACGAAACGATACTAG-AAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACA 349
consensus_7037#2 TTTAAAACGAAACGATACTAG-AAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACA 281
consensus_7037#0 TTTAAAACGAAACGATACTAG-AAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACA 417
consensus_7037#3 ----AAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATA 298
**** *** ***** ** * * * ** * * * ** *** * *
consensus_7037#1 AGAAAACCAACTAACCTATCTACAAACTATGAG-TAATCACTACCAATCAAGTCCTATCG 408
consensus_7037#2 AGAAAACCAACTAACCTATCTACAAACTATGAGCTAATCACTACCAATCAA-TCCTATCG 340
consensus_7037#0 AGAAAACCAACTAACCTATCTACAAACTATGAG-TAATCACTACCAATCAA-TCCTATCG 475
consensus_7037#3 AACCAGCCAAGTG--CCATC--CAATTTAAAAT-------TTGCC---CAAATCATGTCA 344
* * **** * * *** *** ** * * ** *** ** * **
consensus_7037#1 CTCTGTG-TGAGG-GAAG-AGTAAACA---TATATCC-TAAAAAAGAAATG-----GGAA 456
consensus_7037#2 CTCTGTGCTGAGGCGAAGCAGCTAACACACTATATCCCTAAACAACGAACACTGGCGCAA 400
consensus_7037#0 CTCTGTG-TGAGG-GAAG-AGTAAACA---TATATCC-TAAA-AAGAAATG-----GGAA 522
consensus_7037#3 CACTAACCTTACGTGTGCGCNGGAATA---TATGTNNTTCAAGANNCACTG--------T 393
* ** * * * * ** * *** * * ** * *
consensus_7037#1 ACACCGTGTACACA-ATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTA 515
consensus_7037#2 ACACCGTGTACACACATGCGCTCG-CGCACTGTG-CTTGCCGCTCCGGCTTGCACACNTG 458
consensus_7037#0 ACACCGTGTACACA-ATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTA 581
consensus_7037#3 GGTCCANATGTTGGGGTGCCAAGTTCCCAGCGTAACTAAA-GCTGAGCTTAGCAAACGTA 452
** * *** * * * * * * *
consensus_7037#1 CTTTAA-TNTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGNTGTTCTTCCCTG 574
consensus_7037#2 CACTT--TCGGGCATCCTACCCTCTCTAACTCTCTCNCGCTCCACCCGCGCTA----CTG 512
consensus_7037#0 CTTTAATTTTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGTTGTTCTTCCCTG 641
consensus_7037#3 TATCAGAGGGGGGA----AAAACNTGTANTACGATCGGA--------------------- 487
* * * * * * *
consensus_7037#1 TATCTGTAAGTGTGTATNAGGTAAAATATGNGGACTTTCGATTTCGGTGTGTTGTGCTGT 634
consensus_7037#2 CACCTCC----------------------------------------------------- 519
consensus_7037#0 TATCTGTAAGTGTGTATTTTTGTAAAATATTTGACTTTTGATTTCTTTCTTTTTCCAAGT 701
consensus_7037#3 ------------------------------------------------------------
consensus_7037#1 CAGGGTGCTGTNN--------------------------------------------- 647
consensus_7037#2 ----------------------------------------------------------
consensus_7037#0 TTTCCCACTTTTGTTTGGCTGTAAAAATAAATTTAAAGCCCAAGGATAACATCGCGTG 759
consensus_7037#3 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||