These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1056 fasta sequence [CCGAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTTTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTCCTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGAAATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTTCCTTTACTAAGAAACCCTGTGGCAC-AAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCAT-GCCTGGGAAGTAC-GGTGGGAAGGTCCACTTGGAACGGTAGCAG-TTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGGTGCCGACGATCAAAGTTGGGGATGGAATCTGGTAGATAATTTGCTACTTCACAACGGAGACGCCCATGGTATATACCCTCTTCTGAATAATGCCCCTAAATATAAGGTTGGAGAAAGAATACGTGTAATACTGGATTGTGACGAAAATACTTTGTCTTTTGAGAAAAACTATGAATTTCTTGGAGTTGCATTTACAGATTTACCAGAAAAAAATTTCTATCCGACTGTTGCTGCGGTGTATGGAAATACGGAAATTTCAATGGTATATTTAGGCGCTCCATTAGATGGATAAATGGGCTTTCAACGACAGATTCACAGCGCACTGTTTTGGAAACTTCAGTGCGAATATTTATTGAATACCGCTTTAGTATTATTATTGTAACTAGTCAAATAACTTTTTGGAA] [+] EMBL BM578466 [CCGAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTTTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTCCTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGAAATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTTCCTTTACGAAGAAACCCTGTGGCACAAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGGCCTGGGAAGACCGGGTGGGAAGGTCCACTTGGAACGGTAGCAGATTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATAT ] [+] EMBL BX612057 [ GTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGAAATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTTCCTTTACTAAGAAACCCTGTGGCAC AAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCAT GCCTGGGAAGTAC GGTGGGAAGGTCCACTTGGAACGGTAGCAG TTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGGTGCCGACGATCAAAGTTGGGGATGGAATCTGGTAGATAATTTGCTACTTCACAACGGAGACGCCCATGGTATATACCCTCTTCTGAATAATGCCCCTAAATATAAGGTTGGAGAAAGAATACGTGTAATACTGGATTGTGACGAAAATACTTTGTCTTTTGAGAAAAACTATGAATTTCTTGGAGTTGCATTTACAGATTTACCAGAAAAAAATTTCTATCCGACTGTTGCTGCGGTGTATGGAAATACGGAAATTTCAATGGTATATTTAGGCGCTCCATTAGATGGATAAATGGGCTTTCAACGACAGATTCACAGCGCACTGTTTTGGAAACTTCAGTGCGAATATTTATTGAATACCGCTTTAGTATTATTATTGTAACTAGTCAAATAACTTTTTGGAA] [+] EMBL BX611848 [ CCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGAAATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTTCCTTTACTAAGAAACCCTGTGGCAC AAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCAT GCCTGGGAAGTAC GGTGGGAAGGTCCACTTGGAACGGTAGCAG TTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGGTGCCGACGATCAAAGTTGGGGATGGAATCTGGTAGATAATTTGCTACTTCACAACGGAGACGCCCATGGTATATACCCTCTTCTGAATAATGCCCCTAAATATAAGGTTGGAGAAAGAATACGTGTAATACTGGATTGTGACGAAAATACTTTGTCTTTTGAGAAAAACTATGAATTTCTTGGAGTTGCATTTACAGATTTACCAGAAAAAAATTTCTATCCGACTGTTGCTGCGGTGTATGGAAATACGGAAATTTCAATGGTATATTTAGGCGCTCCATTAGATGGATAAATG ] consensusID : consensus_7043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [CCAGCAGATTGCCACGAGGTTNCAATGGGTTTACTCTTCACAGAAACCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCCTGGGAAGTACGGTGGGAAGTGTCCACTTGGAACGGTAGCAGTTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGATGCCGACGATCAAAGTTGGCGCGACTGGAATCTGGCTAGCATAACTTTGCTACTTCACAACGGCAGACGCCCATGGTATTATACCCTACTTCTGGAATAATGCCCCTAAATATAACGGTTTGGACGAACACGAACTACGTGTACATACTTGGANTGGCTTGAACCCGCCACACACACTTACCCTCTTCGCCTCCCCTNCTACCCNTGGCACCGCAACANCACACAACCCTTAACTTGNACCACCTACTCTCCCCTCCTGCGCACAGCCTCTGCCCACCCTTTCCAACCACCGCAACCTCTTAACCCCCACACCAACAGCCAACACNCAACACTTNCTCCCCCTAAANTCCTCCCGCACCCCTGGGCTCTGCCCCCTTGCGCCGACGCCATGTCTACACTGTCGCACCACCACACCTTACCCGCGCACAACAACCTCCTTCATCCACAACCANGCGGCCTACCTAACCTCTCCNAACANCCGCACCGAGCC] [+] EMBL AL930632 [CCAGCAGATTGCCACGAGGTTNCAATGGGTTTACTCTTCACAGAAACCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCCTGGGAAGTACGGTGGGAAGTGTCCACTTGGAACGGTAGCAGTTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGATGCCGACGATCAAAGTTGGCGCGACTGGAATCTGGCTAGCATAACTTTGCTACTTCACAACGGCAGACGCCCATGGTATTATACCCTACTTCTGGAATAATGCCCCTAAATATAACGGTTTGGACGAACACGAACTACGTGTACATACTTGGANTGGCTTGAACCCGCCACACACACTTACCCTCTTCGCCTCCCCTNCTACCCNTGGCACCGCAACANCACACAACCCTTAACTTGNACCACCTACTCTCCCCTCCTGCGCACAGCCTCTGCCCACCCTTTCCAACCACCGCAACCTCTTAACCCCCACACCAACAGCCAACACNCAACACTTNCTCCCCCTAAANTCCTCCCGCACCCCTGGGCTCTGCCCCCTTGCGCCGACGCCATGTCTACACTGTCGCACCACCACACCTTACCCGCGCACAACAACCTCCTTCATCCACAACCANGCGGCCTACCTAACCTCTCCNAACANCCGCACCGAGCC] consensusID : consensus_7043#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence [AAGCTAGCTCAATCGTCCGCTTTGAACTTACTTGATCCAGTACAAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTGTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTACTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGAAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCATGGGAAGTACGGTGGGAAGGTCCACTTGGAACGGTAGCAGTT] [+] EMBL CNS08TSG [AAGCTAGCTCAATCGTCCGCTTTGAACTTACTTGATCCAGTACAAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTGTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTACTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGAAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCATGGGAAGTACGGTGGGAAGGT ] [+] EMBL BX604353 [ CGCTTTGAACTTACTTGATCCAGTACAAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTGTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTCCTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGAAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCCTGGGAAGTACGGTGGGAAGGTCCACTTGGAACGGTAGCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7043#0 ------------------------------------------CCGAGAAACTTGTTTTGC 18 consensus_7043#2 AAGCTAGCTCAATCGTCCGCT-TTGAACTTACTTGATCCAGTACAAGAAACTTGTTTTGC 59 consensus_7043#1 ---CCAGCAGATTGCCACGAGGTTNCAATGGGTTTACTCTTCAC-AGAAACCTGTGGCAC 56 * ****** *** * consensus_7043#0 ----TACAGT--GCTCTTTAACAATAGTT---TTGTAAGACATTTGTTTTGCATAAAATC 69 consensus_7043#2 ----TACAGT--GCTCTTTAACAATAGTT---TTGTAAGACATTTGTGTTGCATAAAATC 110 consensus_7043#1 AAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCCTGGGAAG 116 *** * * ** * * * ** ** ** * * *** * * consensus_7043#0 GATATTGCTAT-TGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCC 128 consensus_7043#2 GATATTGCTAT-TGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCC 169 consensus_7043#1 TACGGTGGGAAGTGTCCACTTGGAACGGTAGCAGTTGTAGGAATTGCTACCAAGGATGCC 176 * ** * *** ** * ** * *** ***** **** ** ** consensus_7043#0 GGA---TAATGTATTGGAGCTAATATTTTCCTTTCTGAAGCTG--CAGGATCTACGTAAC 183 consensus_7043#2 GGA---TAATGTATTGGAGCTAATATTTTACTTTCTGAAGCTG--CAGGATCTACGTAAC 224 consensus_7043#1 GCTATTCAATGTCATGGATATTATGCTTTACTCGATGCCGACGATCAAAGTTGGCGCGAC 236 * ***** **** * ** *** ** ** * * ** * ** ** consensus_7043#0 TGTACATTAGTTTGCAAAA----GCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGT 239 consensus_7043#2 TGTACATTAGTTTGCAAAA----GCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGT 280 consensus_7043#1 TGGAATCTGGCTAGCATAACTTTGCTACTTCACAACGGCAGACGCCCATGGTATTATACC 296 ** * * * * *** ** *** * * * ** * * * * consensus_7043#0 TTGGCGC--GCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTG 297 consensus_7043#2 TTGGCGC--GCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTG 338 consensus_7043#1 CTACTTCTGGAATAATGCCC-CTAAATATAACGGTTTGGACGAACACGAACTACGTGTAC 355 * * * * **** * *** * * * * * * *** * * * consensus_7043#0 ACTGTTGTGCCGACGTACAAA-GCTAAAC-TGCGAGCATATTTC--CACGCCTGGAATCC 353 consensus_7043#2 ACTGTTGTGCCGACGTACAAA-GCTAAAC-TGCGAGCATATTTC--CACGCCTGGAATCC 394 consensus_7043#1 ATACTTGGANTGGCTTGAACCCGCCACACACACTTACCCTCTTCGCCTCCCCTNCTACCC 415 * *** * * * * ** * ** * * *** * * *** * ** consensus_7043#0 GTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGA 413 consensus_7043#2 GTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAG------ 448 consensus_7043#1 NTGGCACCGCAA-CANCACACAACCCTTAACTTGNACCA-CCTACTCTCCCCTCCTGCGC 473 * * * * * *** * * ** * ****** * * consensus_7043#0 AATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTT 473 consensus_7043#2 ------------------------------------------------------------ consensus_7043#1 ACAGCCTCTGCCCACCCTTTCCAACCACCGCAACCTCTTAACCCCCACACCAACAGCCAA 533 consensus_7043#0 CCTTTACTAAGAAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTT 533 consensus_7043#2 -----------AAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTT 497 consensus_7043#1 CACNCA-----ACACTTNCTCCCCCTAAANTCCTCCCGCACCCCTGGGC--TCTGCCCCC 586 * ** * * * ** * * * ** *** ** consensus_7043#0 AAACATGGCAGGCATGCCTGGGAAGT-ACGGTGGGAAGGTCCACTTG-GAACGGTAGCAG 591 consensus_7043#2 AAACATGGCAGGCATGCATGGGAAGT-ACGGTGGGAAGGTCCACTTG-GAACGGTAGCAG 555 consensus_7043#1 TTGCGCCGACGCCATGTCTACACTGTCGCACCACCACACCTTACCCGCGCACAACAACCT 646 * * * **** * ** * * ** * * ** * * consensus_7043#0 TTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCG 651 consensus_7043#2 TT---------------------------------------------------------- 557 consensus_7043#1 CCTTCATCCACAACCANGCGGCCTACCTAACCTCTCCNAACANCCGCACCGAGCC----- 701 consensus_7043#0 GTGCCGACGATCAAAGTTGGGGATGGAATCTGGTAGATAATTTGCTACTTCACAACGGAG 711 consensus_7043#2 ------------------------------------------------------------ consensus_7043#1 ------------------------------------------------------------ consensus_7043#0 ACGCCCATGGTATATACCCTCTTCTGAATAATGCCCCTAAATATAAGGTTGGAGAAAGAA 771 consensus_7043#2 ------------------------------------------------------------ consensus_7043#1 ------------------------------------------------------------ consensus_7043#0 TACGTGTAATACTGGATTGTGACGAAAATACTTTGTCTTTTGAGAAAAACTATGAATTTC 831 consensus_7043#2 ------------------------------------------------------------ consensus_7043#1 ------------------------------------------------------------ consensus_7043#0 TTGGAGTTGCATTTACAGATTTACCAGAAAAAAATTTCTATCCGACTGTTGCTGCGGTGT 891 consensus_7043#2 ------------------------------------------------------------ consensus_7043#1 ------------------------------------------------------------ consensus_7043#0 ATGGAAATACGGAAATTTCAATGGTATATTTAGGCGCTCCATTAGATGGATAAATGGGCT 951 consensus_7043#2 ------------------------------------------------------------ consensus_7043#1 ------------------------------------------------------------ consensus_7043#0 TTCAACGACAGATTCACAGCGCACTGTTTTGGAAACTTCAGTGCGAATATTTATTGAATA 1011 consensus_7043#2 ------------------------------------------------------------ consensus_7043#1 ------------------------------------------------------------ consensus_7043#0 CCGCTTTAGTATTATTATTGTAACTAGTCAAATAACTTTTTGGAA 1056 consensus_7043#2 --------------------------------------------- consensus_7043#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||