cluster # 705

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Anopheles gambiae
cluster # 705 cluster # 705 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_705#0 length = 506 sequences # 1

consensus_705#1 length = 377 sequences # 1

consensusID : consensus_705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [CCGCCCACGCGTCCGGCAGCATCAGCAACACCAGCAGCAGCAGCAACACCAGCAGCAAAAGCAAACCCCCCCCCCCCCCCCCAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACCACAAGTCCACAATTTGAATGGCTAAACGAAAATACCACACCGTAAACTAGCATCAGCAGCAGCAGCAGCAACAAGAAGAAGAAAAAGAAGAAGAGCAACAACAGCAACAACAACCTTATCTTAATCGATAATCAAAAAAAAACTCCCCGTTGAGAGACTCACACGCCACCATCACGGGCGCGAAACTGCTTCAACTGTTCAACTACACTCAGTTTAGGGAAGTTTAGGGTAATGCAAAACAGCACTCCAATTGCACCAATTGCAAAACCAAACCACACTTACAGACACGTACAGGACGGCTGACCCTTGCTCTGGAAGCTATCGGTGAAGCATGGCAAAGACATTGCTCGATAGTAATATTAGTAGCAGGTTTAGCGGTTTAGCGT]

[+] EMBL BM645267             [CCGCCCACGCGTCCGGCAGCATCAGCAACACCAGCAGCAGCAGCAACACCAGCAGCAAAAGCAAACCCCCCCCCCCCCCCCCAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACCACAAGTCCACAATTTGAATGGCTAAACGAAAATACCACACCGTAAACTAGCATCAGCAGCAGCAGCAGCAACAAGAAGAAGAAAAAGAAGAAGAGCAACAACAGCAACAACAACCTTATCTTAATCGATAATCAAAAAAAAACTCCCCGTTGAGAGACTCACACGCCACCATCACGGGCGCGAAACTGCTTCAACTGTTCAACTACACTCAGTTTAGGGAAGTTTAGGGTAATGCAAAACAGCACTCCAATTGCACCAATTGCAAAACCAAACCACACTTACAGACACGTACAGGACGGCTGACCCTTGCTCTGGAAGCTATCGGTGAAGCATGGCAAAGACATTGCTCGATAGTAATATTAGTAGCAGGTTTAGCGGTTTAGCGT]




>consensus_705#0
CCGCCCACGCGTCCGGCAGCATCAGCAACACCAGCAGCAGCAGCAACACCAGCAGCAAAA
GCAAACCCCCCCCCCCCCCCCCAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACC
ACAAGTCCACAATTTGAATGGCTAAACGAAAATACCACACCGTAAACTAGCATCAGCAGC
AGCAGCAGCAACAAGAAGAAGAAAAAGAAGAAGAGCAACAACAGCAACAACAACCTTATC
TTAATCGATAATCAAAAAAAAACTCCCCGTTGAGAGACTCACACGCCACCATCACGGGCG
CGAAACTGCTTCAACTGTTCAACTACACTCAGTTTAGGGAAGTTTAGGGTAATGCAAAAC
AGCACTCCAATTGCACCAATTGCAAAACCAAACCACACTTACAGACACGTACAGGACGGC
TGACCCTTGCTCTGGAAGCTATCGGTGAAGCATGGCAAAGACATTGCTCGATAGTAATAT
TAGTAGCAGGTTTAGCGGTTTAGCGT

consensusID : consensus_705#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [CCGCATATGTATATATGTATGTGCGTATGTATGCAAAATGCAAAGAATCCTCCTGGGGCGGGTGGTGGTATCGAGGAAGAAGGAAGAGTGTATCAAAGCCCCCCCATAAAGGGCGTCAATCCTGGGTGTGGATGAAACCGAAACCCAGCCACACAACCCCACAGACAAACACACACGCGTATATATATATAAATAATAGGCGAAGATCGTGCAGCCAGCTCGAAAGTATTAACTTAGACGGACAGAGGACAGAGCACAGAGGCACAGGAGTAGCAAAAGCGAAGAGGTGGCAAAAGCAAACCCTCCCCCCCCCCCCCCCCCAAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACCACAAGCCCACAATTTGA]

[+] EMBL BM648112             [CCGCATATGTATATATGTATGTGCGTATGTATGCAAAATGCAAAGAATCCTCCTGGGGCGGGTGGTGGTATCGAGGAAGAAGGAAGAGTGTATCAAAGCCCCCCCATAAAGGGCGTCAATCCTGGGTGTGGATGAAACCGAAACCCAGCCACACAACCCCACAGACAAACACACACGCGTATATATATATAAATAATAGGCGAAGATCGTGCAGCCAGCTCGAAAGTATTAACTTAGACGGACAGAGGACAGAGCACAGAGGCACAGGAGTAGCAAAAGCGAAGAGGTGGCAAAAGCAAACCCTCCCCCCCCCCCCCCCCCAAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACCACAAGCCCACAATTTGA]




>consensus_705#1
CCGCATATGTATATATGTATGTGCGTATGTATGCAAAATGCAAAGAATCCTCCTGGGGCG
GGTGGTGGTATCGAGGAAGAAGGAAGAGTGTATCAAAGCCCCCCCATAAAGGGCGTCAAT
CCTGGGTGTGGATGAAACCGAAACCCAGCCACACAACCCCACAGACAAACACACACGCGT
ATATATATATAAATAATAGGCGAAGATCGTGCAGCCAGCTCGAAAGTATTAACTTAGACG
GACAGAGGACAGAGCACAGAGGCACAGGAGTAGCAAAAGCGAAGAGGTGGCAAAAGCAAA
CCCTCCCCCCCCCCCCCCCCCAAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACC
ACAAGCCCACAATTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_705#0      CCGCCCACGCGTCCGGCAGCATCAGCAACACCAGCAGCAGCAGCAACACCAGCAGCAAAA 60
consensus_705#1      ------------------------------------------------------------
                                                                                 

consensus_705#0      GCAAACCCCCCCCCCCCCCCCCAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACC 120
consensus_705#1      ----------------------------------------------------------CC 2
                                                                               **

consensus_705#0      ACAAGTCCACAATTTGAATGGCTAAACGAAAATACCACACCGTAAACTAGCATCAGCAGC 180
consensus_705#1      GCATATGTATA-TATGTATGTGCGTATGTATGCAAAATGCAAAGAATCCTCCTGGGGCG- 60
                      **  *  * * * ** ***     * * *   *  *  *    **    * *  *  * 

consensus_705#0      AGCAGCAGCAACAAGAAGAAGAAAAAGAAGAAGAGCAACAACAGCAACAACAACCTTA-T 239
consensus_705#1      GGTGGTGGTATCGAGGAAGAAGGAAGAGTGTATCAAAGCCCCCCCATAAAGGGCGTCAAT 120
                      *  *  * * * ** *  *   **    * *    * *  *  **  **   * * * *

consensus_705#0      CTTAATCGATAATCAAAAAAAAACTCCCCGTTGAGAGACTCACACGCCACCATCACGGGC 299
consensus_705#1      CCTGGGTGTGGATGAAACCGAAACCCAGC-CACACAACCCCACAGACAAACA-CACACGC 178
                     * *    *   ** ***   **** *  *    * *  * ****  * * ** ***  **

consensus_705#0      GCGAAACTGCTTCAACTGTTCAACTACACTCAGTTTAGGGAAGTTTAGGGTAATGCAAAA 359
consensus_705#1      GTATATATA-TATAAATAATAGGCGAAGATC-GTGCAGCCAGCTCGAAAGTATT---AAC 233
                     *   *  *  *  ** *  *   * *   ** **  **  *  *  *  *** *   ** 

consensus_705#0      CAGCACTCCAATTGCACCAATTGCAAAACCAAACCACACTTACAGACACGTACAGG---- 415
consensus_705#1      TTAGACGGACAGAGGACAGAGCACAGAGGCACA--GGAGTAGCAAAAGCGAAGAGGTGGC 291
                         **    *  * **  *   ** *  ** *    * *  ** *  ** * ***    

consensus_705#0      -ACGGCTGACCCTTGCTCTGGAAGCTATCGGTGAAGCATGGCAAAGACATTGCTCGATAG 474
consensus_705#1      AAAAGCAAACCCTCCCCCCCCCCCCCCCCCAAAAAACCCTA-GATTTTATTGTTCAACTA 350
                      *  **  *****  * *      *   *    ** *      *    **** ** *   

consensus_705#0      TAATATTAGTAGCAGGTTTAGCGGTTTAGCGT 506
consensus_705#1      GCGCGATACCA-CAAGCCCA-CAATTTGA--- 377
                           **  * ** *   * *  ***