These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1021 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTC--GACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGTGAATCTGAGCGTGTACGATGTGTTCCGTGGGCAGAACGTGTTCGTAAACCCGCAAACCATTGTCGATCGGTTGGTGGGAGAAGCTGTCCTCGCTGCAGCAGGCTCCGACCGAATTGACCGAGGAGCTGACCCTTCTGGTTGAAGCGTTCGAGGGTCGGCTGGGTGAGGTTCGGGCGGCTTACACCAGTTGCCTGACGATGAACGACCAGCTGCTACAGACCACACTTGGCACGGTGCTTACGCAACTGCAACAAATCTGTCTCGGATCGTTACTGCCGGCTGCTTCTACCTCGGAACCAACGGAGGAAACTGAGCAAACGGAACAAACAGACCAAACCGAGCAAACGGAAGCAACAGAAGAGACAGAATCTACCGAACCGGCCTCGGAACCAGCGCCCGAGATTCCAACCGAAACGGAAGTGCCTCCCACTGAAGTGGCTGAACCGGAACCACCTAAAAAAGGAAAAAATTATAGAAA] [+] EMBL BM584011 [CCGCCCACGCGTCCGCCCACGCGTCCGGACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGTGAATCTGAGCGTGTACGATGTGTTCCGTGGGCAGAACGTGTTCGTAAACCCGCAAACCATTGTCGATCGGTTGGTGGGAGAAGCTGTCCTCGCTGC ] [+] EMBL BM626880 [CCGCGGACGCGTGGGCGGACGCGTG GGCAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGT ] [+] EMBL CNS095HE [ C GACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAA ATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGTGAATCTGAGCGTGTACGATGTGTTCCGTGGGCAGAACGTGTTCGTAAACCCGCAAACCATTGTCGATCGGTTGGT GGAGAAGCTGTCCTCGCTGCAGCAGGCTCCGACCGAATTGACCGAGGAGCTGACCCTTCTGGTTGAAGCGTTCGAGGGTCGGCTGGGTGAGGTTCGGGCGGCTTACACCAGTTGCCTGACGATGAACGACCAGCTGCTACAGACCACACTTGGCACGGTGCTTACGCAACTGCAACAAATCTGTCTCGGATCGTTACTGCCGGCTGCTTCTACCTCGGAACCAACGGAGGAAACTGAGCAAACGGAACAAACAGACCAAACCGAGCAAACGGAAGCAACAGAAGAGACAGAATCTACCGAACCGGCCTCGGAACCAGCGCCCGAGATTCCAACCGAAACGGAAGTGCCTCCCACTGAAGTGGCTGAACCGGAACCACCTAAAAAAGGAAAAAATTATAGAAA] consensusID : consensus_7055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence [CGACCCACGCGTCCGCACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGCCGTCGTCTTCGTTCG-TCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGTGAGAAGATTGCGGCCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAACTGTGGCACGCTCGGCGGTGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCCGTCGAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGGAGTAAGCCTGTCCCGCCTGA] [+] EMBL BM642133 [CGACCCACGCGTCCGCACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGCCGTCGTCTTCGTTCG TCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGTGAGAAGATTGCGGCCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTC ] [+] EMBL BM644263 [ ccgcccacgCGTCCGCCCACGCGTCCG GGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGTGAGAAGATTGCGGCCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAACTGTGGCACGCTCGGCGGTGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCCGTCGAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGGAGTAAGCCTGTCCCGCCTGA] consensusID : consensus_7055#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [CCAGACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACCATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCCCGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATGAAAAAAAAAAGGAG] [+] EMBL CNS08RDQ [CCAGACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACCATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCCCGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATGAAAAAAAAAAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7055#0 ---------------------------------CCGCCCACGCGTCCGCCCACGCGTCGA 27 consensus_7055#2 -------------------------------------------------------CCAGA 5 consensus_7055#1 CGACCCACGCGTCCGCACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGT 60 * consensus_7055#0 CAGGAGGTGTAATAGCAACTCGTTACGCTAGCG-ATCGACCACAAGGCATCACTACACAA 86 consensus_7055#2 CAGGAGGTGTAATAGCAACTCGTTACGCTAGCG-ATCGACCACAAGGCATCACTACACAA 64 consensus_7055#1 CGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAA 120 * * * * *** ** * * * **** * ** * ** * * * * ** consensus_7055#0 ATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTT-ATTCATGGGCGTTC--TCAGTG 143 consensus_7055#2 ATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTT-ATTCATGGGCGTTC--TCAGTG 121 consensus_7055#1 GCTCCAGTACGCGCCGGTGTCCCGCGGCCGTCGTCTTCGTTCGTCGCTCGTCAGCAAGGG 180 * *** * * * ** * ** * *** *** * * ** ** * consensus_7055#0 TTTCGTTAGCACAACGTGAAAC-ATCTCTTAGAGTCATCGATGCGCTACGCGACCT-CCA 201 consensus_7055#2 TTTCGTTAGCACAACGTGAAACCATCTCTTAGAGTCATCGATGCGCTACGCGACCT-CCA 180 consensus_7055#1 CTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTA 240 *** * * * * ** * * *** * ** * * ** ** * * consensus_7055#0 TCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAA 261 consensus_7055#2 TCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAA 240 consensus_7055#1 CCACGGTGAGAAGATTGCGGCCAACATCGTCGTGACG--AACAACTCGCGCAAGACTGTC 298 * * * * *** * * * ******* * * * * ** * **** consensus_7055#0 CAGCTCAGAAGTGATCTTCAAGTTCAACATAG--ACATTGCATCGCGCAAAGAATCGTTC 319 consensus_7055#2 CAGCTCAGAAGTGATCTTCAAGTTCAACATAG--ACATTGCATCGCGCAAAGAATCGTTC 298 consensus_7055#1 AAGAGCATCAAGTGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTC 358 ** ** * * ** ** ** * * * * * ** * * **** consensus_7055#0 ATGCAAAC-CGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCAT 378 consensus_7055#2 ATGCAAAC-CGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCAT 357 consensus_7055#1 A-GCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCA-CGCCCGGGGCGA 416 * **** * * * * * ** ** ** * * * * * ** * * ** consensus_7055#0 CAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCT 438 consensus_7055#2 CAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCT 417 consensus_7055#1 GCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCT-----CCAGC---AACAAGGACCG 468 *** * * * ** ** **** * * **** * * * consensus_7055#0 TGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAAT 498 consensus_7055#2 TGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAAT 477 consensus_7055#1 CCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCG----- 523 *** * * ** * * ****** * * *** * ** ** ** consensus_7055#0 CACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGTGAATCTGAGCGTGTA 558 consensus_7055#2 CCCGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATGAAA-AAAAAAAGGAG------ 530 consensus_7055#1 TCCACGCTGATCAGCGAGG--GCAAGTGTCCGTCGGATGCGA--TGGGTATTGTCATCTC 579 * *** * ** * ****** ** ** consensus_7055#0 CGATGTGTTCCGTGGGCAGAACGTGTTCGTAAACCCGCAAACCATTGTCGATCGGTTGGT 618 consensus_7055#2 ------------------------------------------------------------ consensus_7055#1 GTACTCGCTGCGCGTCAAGCTCAACTGTG---GCACGCTCGGCGGTGAACTCCAGACGGA 636 consensus_7055#0 GGGAGAAGCTGTCCTCGCTGCAGCAGGCTCCGACCGAATTGACCGAGGAGCTGACCCTTC 678 consensus_7055#2 ------------------------------------------------------------ consensus_7055#1 CGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCCGTCGAGCGAGAGCGCGTGAACGC 696 consensus_7055#0 TGGTTGAAGCGTTCGAGGGTCGGCTGGGTGAGGTTCGGGCGGCTTACACCAGTTGCCTGA 738 consensus_7055#2 ------------------------------------------------------------ consensus_7055#1 CCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGA 756 consensus_7055#0 CGATGAACGACCAGCTGCTACAGACCACACTTGGCACGGTGCTTACGCAACTGCAACAAA 798 consensus_7055#2 ------------------------------------------------------------ consensus_7055#1 TGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGGAGTAAG 816 consensus_7055#0 TCTGTCTCGGATCGTTACTGCCGGCTGCTTCTACCTCGGAACCAACGGAGGAAACTGAGC 858 consensus_7055#2 ------------------------------------------------------------ consensus_7055#1 CCTGTCCCGCCTGA---------------------------------------------- 830 consensus_7055#0 AAACGGAACAAACAGACCAAACCGAGCAAACGGAAGCAACAGAAGAGACAGAATCTACCG 918 consensus_7055#2 ------------------------------------------------------------ consensus_7055#1 ------------------------------------------------------------ consensus_7055#0 AACCGGCCTCGGAACCAGCGCCCGAGATTCCAACCGAAACGGAAGTGCCTCCCACTGAAG 978 consensus_7055#2 ------------------------------------------------------------ consensus_7055#1 ------------------------------------------------------------ consensus_7055#0 TGGCTGAACCGGAACCACCTAAAAAAGGAAAAAATTATAGAAA 1021 consensus_7055#2 ------------------------------------------- consensus_7055#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||