These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7059#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence [CCCCGCAGGTTTACACGTCATTTCACCGGGATGTAAAAATATCAAACATAAATAACTGGCGACAAATTTTCCTCGCCTTTNTCCGTACGTGTATTTTCTGATGCAAANCAGTGCGTGAGAAAGAAGTNTGACGTGTATGAATCATTCGTCATTGCCCACGGTCCGGTCTGTATCCATTTGTACCTGTCTGCAAATTCTAACCAGTCAGATGCCATCCCGATACTAAACATCATGAGCGATAATCCAAAACCTGGTNACAAACCAGGTTGGCAGCGNTTTATGCGGNTCTGGCTGCACCGGNAACGTNCCGGAGNGACATTCATTACCGCTTGGGAATTTGGGGACCCAAAAACAANTTTTGGGTCTTACACTAAAACGCGGCATTCCCAGCCTTACANTACGTTACCNATTCACCCTTGGCCAAGTANCTTTGGAAACGCCCAATATAACATATACGTATCACAAAAGANACTGTCAAACAAAGNTCATAAGGGGNAGGTGGCACCTTGAATTGACAAAGGAGGANGCGGGTACCCCCCATNNGNGTAATTCACGTTTAAAACNCCNCCNGCNNTATNTGAAAAAATCCCCACTNGTNAGTAANTGGCATACACAGAANGGGAGGGAGACTTCCACGCAACAAATAGAGNAAAANATTGATGAANAAGATGGCGAAACAGCCCTTGGGGGATAANAAGAGTATNCCCACCCTTGTGTNAAANTGCCCCAAACCGCATNAAATCATAGCCCCGNTTTTGNGGGTGANAAATANAACCAANAAGACTCTCNAGAGAGCGTAAGCANCTCAAAAGCTATACAAGNCAAACCNAACNCACAGACACAACAN] [+] EMBL AL695235 [CCCCGCAGGTTTACACGTCATTTCACCGGGATGTAAAAATATCAAACATAAATAACTGGCGACAAATTTTCCTCGCCTTTNTCCGTACGTGTATTTTCTGATGCAAANCAGTGCGTGAGAAAGAAGTNTGACGTGTATGAATCATTCGTCATTGCCCACGGTCCGGTCTGTATCCATTTGTACCTGTCTGCAAATTCTAACCAGTCAGATGCCATCCCGATACTAAACATCATGAGCGATAATCCAAAACCTGGTNACAAACCAGGTTGGCAGCGNTTTATGCGGNTCTGGCTGCACCGGNAACGTNCCGGAGNGACATTCATTACCGCTTGGGAATTTGGGGACCCAAAAACAANTTTTGGGTCTTACACTAAAACGCGGCATTCCCAGCCTTACANTACGTTACCNATTCACCCTTGGCCAAGTANCTTTGGAAACGCCCAATATAACATATACGTATCACAAAAGANACTGTCAAACAAAGNTCATAAGGGGNAGGTGGCACCTTGAATTGACAAAGGAGGANGCGGGTACCCCCCATNNGNGTAATTCACGTTTAAAACNCCNCCNGCNNTATNTGAAAAAATCCCCACTNGTNAGTAANTGGCATACACAGAANGGGAGGGAGACTTCCACGCAACAAATAGAGNAAAANATTGATGAANAAGATGGCGAAACAGCCCTTGGGGGATAANAAGAGTATNCCCACCCTTGTGTNAAANTGCCCCAAACCGCATNAAATCATAGCCCCGNTTTTGNGGGTGANAAATANAACCAANAAGACTCTCNAGAGAGCGTAAGCANCTCAAAAGCTATACAAGNCAAACCNAACNCACAGACACAACAN] consensusID : consensus_7059#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CAGAATCGCCCGACGGTTATTATACTTTATGGAATGCNTGGAGAGTAACAATGAGATATACGAAGAAAATGATAAATGAGCAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCACCATCGTTTGCTTTCCAACTTCCTCTAACGAAAAGGATCAACCGTGTTTTAACGACAGCGGATACAGCTTTAGGCCTTAGGCAAAAGTTCACCACTAATGGTTGACGACGTTAGTGTTGCGCTATTGCGCTACAGATCCCTCTCCAGCAAAACACGACAAGCTTTGTTTTCCTGCAGCCGGAAGCAATATCCTTGTGATTGCGACAAGCAGTGGACTATTGACCGTACACCTCTTGAACCCAACGAGGACAAAAGGATTCGGNATTAGTCAGATCTCACTTTGACTTTGCTCGGGTAAACGCAAAACAAGGGTAACAGCTGTTCTGCTGTAACGCGCATCATACCCCCCTTAGTTGNGAATAGGTTCTCTTAGGTAGTCNGTTATCGGCATCGGGAAGCCATAACACCTTACTTTCCGAACTAAGCTCAAACAGGCCAACAACACGAAACTTCAACCTTACACACCCCAGTATTCTATTCAGACTGTCCAAATCCGATACGNAAT] [+] EMBL AL697050 [CAGAATCGCCCGACGGTTATTATACTTTATGGAATGCNTGGAGAGTAACAATGAGATATACGAAGAAAATGATAAATGAGCAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTCCCATGTTTAAGAAAGAAAGGCTTTTGTTTGCACCATCGTTTGCTTTCCAACTTCCTCTAACGAAAAGGATCAACCGTGTTTTAACGACAGCGGATACAGCTTTAGGCCTTAGGCAAAAGTTCACCACTAATGGTTGACGACGTTAGTGTTGCGCTATTGCGCTACAGATCCCTCTCCAGCAAAACACGACAAGCTTTGTTTTCCTGCAGCCGGAAGCAATATCCTTGTGATTGCGACAAGCAGTGGACTATTGACCGTACACCTCTTGAACCCAACGAGGACAAAAGGATTCGGNATTAGTCAGATCTCACTTTGACTTTGCTCGGGTAAACGCAAAACAAGGGTAACAGCTGTTCTGCTGTAACGCGCATCATACCCCCCTTAGTTGNGAATAGGTTCTCTTAGGTAGTCNGTTATCGGCATCGGGAAGCCATAACACCTTACTTTCCGAACTAAGCTCAAACAGGCCAACAACACGAAACTTCAACCTTACACACCCCAGTATTCTATTCAGACTGTCCAAATCCGATACGNAAT] consensusID : consensus_7059#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 644 fasta sequence [CCGGTTTTATTTTTGTTACAACGTTTACAACCAGCCACGTCGTTCGTAACGGATTGTTTCAACGT-GCGCCCAAACCTA-CCCCCCCCCCCCCCCTGGCCAGACACCGAACAGCGCAACACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCTTACAAAAGCAATCATTTATTAAGCAGAAGGCGCAGAAGGAAGAAAACAAAGCAAAGGGAAAATTTATCTTTTAAGTAGTAGTGTATAGACACATCAAACAACGCCCCTTTAAGAGGAGGGACGAGAGAGCGCAAGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCGATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTTATCGTTTAAACTCAGCTTATTTGTATGTGTGTGTGTTTGTGCGATTGGTGATGATTAATGTACGTGTGCTCTAGTTTGTTTGTTTTGTTTATTTTGTTACTGCACAAGAGCTCAATTTTGATCGTAACCAGATCAGTAGGAAAAGGAAGGAAAACAAAAGAATGGTCCATGAAGGTCCAGGCAATATATAGAGCCTAGCAGGGTGGATTGCGTGTTGTTTAGTAGAATTAAAGTCGTCTTTTTTC] [+] EMBL BM575510 [CCGGTTTTATTTTTGTTACAACGTTTACAACCAGCCACGTCGTTCGTAACGGATTGTTTCAACGTGGCGCCCAAACCTA CCCCCCCCCCCCCCCTGGCCAGACACCGAACAGCGCAACACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCTTACAAAAGCAATCATTTATTAAGCAGAAGGCGCAGAAGGAAGAAAACAAAGCAAAGGGAAAATTTATCTTTTAAGTAGTAGTGTATAGACACATCAAACAACGCCCCTTTAAGAGGAGGGACGAGAGAGCGCAAGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCGATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTTATCGTTTAAACTCAGCTTATTTGTATGTGTGTGTGTTTGTGCGATTGGTGATGATTAATGTACGTGTGCTCTAGTTTGTTTGTTTTGTTTATTTTGTTACTGCACAAGAGCTCAATTTTGATCGTAACCAGATCAGTAGGAAAAGGAAGGAAAACAAAAGAATGGTCCATGAAGGTCCAGGCAATATATAGAGCCTAGCAGGGTGGATTGCGTGTTGTTTAGTAGAATTAAAGTCGTCTTTTTTC] [+] EMBL BM590417 [ ccgCAACCAGCCACGTCGTTCGTAACGGATTGTTTCAACGT GCGCCCAAACCTA CCCCCCCCCCCCCCCTGGGCAGACACCGAACAGCGCAACACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCTTACAAAAGCAATCATTTATTAAGCAGAAGGCGCAGAAGGAAGAAAACAAAGCAAAGGGAAAATTTATCTTTTAAGTAGTAGTGTATAGACACATCAAACAACGCCCCTTTAAGAGGAGGGACGAGAGAGCGCAAGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCGATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTT ] [+] EMBL BM634224 [ ccgcccac GCGTCC GACCTACCCCCCCCCCCCCCCCTGGCCAGACACCGAACAGCGCAACACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCTTACAAAAGCAATCATTTATTAAGCAGAAGGCGCACAAGGAAGAAGACAAAGCAAAGGGAAAATTTATCTTTTAAGTAGTAGTGTATAGACACATCAAACAACGCCCCTTTAAGAGGAGGGACGAGAGAGCGCAAGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCGATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTTATCGTTTAAACTCAGCTTATTTGTATGTGTGTGTGTTTGTGCGATTGGTGATGATTAATGAACGTGTGCTCTAGGTTGATTGTTTTGCTGATTTTGATACT ] consensusID : consensus_7059#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCGATCGACTGCATCGAGTTAGAACGCGTGGATTGCGCTGAGAGAGAGGAGGAACAATAAAAAGAGTAGCATTGAAAGAAAAAACGAGAAAACACTCGCAAAGTACTGACGGAAAGTGGAGCTAACGCTACACCGACCAAAACGCCCGTCCCGATGGAGGAGGAGGACAAGAAAGTGGCTGCAGGCGACGCTGATGCCTCGGCCGATCCGAAGGAGCTGGCCAAGAATGAACTGTCCGAGGTGCACAAGCATGAATCGGCACCGTTCGATCCGTCGATCGAACCGCTGCTGAGAGACAACCCCCGGCGGTTCGTGATCTTCCCCATCCAGTATCCGGACATTTGGCAAATGTACAAGAAGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAAGACTGGGAGACGCTGAAACCAAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCTGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTACGGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCGATGGAAAATGTGCACAGCGAGATGTAC] [+] EMBL BM632356 [CCGATCGACTGCATCGAGTTAGAACGCGTGGATTGCGCTGAGAGAGAGGAGGAACAATAAAAAGAGTAGCATTGAAAGAAAAAACGAGAAAACACTCGCAAAGTACTGACGGAAAGTGGAGCTAACGCTACACCGACCAAAACGCCCGTCCCGATGGAGGAGGAGGACAAGAAAGTGGCTGCAGGCGACGCTGATGCCTCGGCCGATCCGAAGGAGCTGGCCAAGAATGAACTGTCCGAGGTGCACAAGCATGAATCGGCACCGTTCGATCCGTCGATCGAACCGCTGCTGAGAGACAACCCCCGGCGGTTCGTGATCTTCCCCATCCAGTATCCGGACATTTGGCAAATGTACAAGAAGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAAGACTGGGAGACGCTGAAACCAAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCTGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTACGGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCGATGGAAAATGTGCACAGCGAGATGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7059#0 CCCCGCAGGTTTACACGTCATTTCACCGGGATGTAAAAATATCAAACATAAATAACTGGC 60 consensus_7059#3 ------------------------------------------------------------ consensus_7059#1 ------------------------------------------------------------ consensus_7059#2 ------------------------------------------------------------ consensus_7059#0 GACAAATTTTCCTCGCCTTTNTCCGTACGTGTATTTTCTGATGCAAANCAGTGCGTGAGA 120 consensus_7059#3 ------------------------------------------------------------ consensus_7059#1 ------------------------------------------------------------ consensus_7059#2 ------------------------------------------------------------ consensus_7059#0 AAGAAGTNTGACGTGTATGAATCATTCGTCATTGCCCACGGTCCGGTCTGTATCCATTTG 180 consensus_7059#3 ------------------------------------------------------------ consensus_7059#1 ------------------------------------------------------------ consensus_7059#2 ------------------------------------------------------------ consensus_7059#0 TACCTGTCTGCAAATTCTAACCAGTCAGATGCCATCCCGATACTAAACATCATGAGCGAT 240 consensus_7059#3 ------------------------------------------------------------ consensus_7059#1 ------------------------------------------CAGAATCGCCCGACGGTT 18 consensus_7059#2 ------------------------------------------------------------ consensus_7059#0 AATCCAAAACCTGGTNACAAACCAGGTTGGCAGCGNTTTATGCGGNTCTGGCTGCAC--C 298 consensus_7059#3 -----------------CCGATCGACT--GCATCGAGTTAGAACGCGTGGATTGCGC--T 39 consensus_7059#1 ATTATACTTTATGGAATGCNTGGAGAGTAACAATGAGATATACGAAGAAAATGATAAA-T 77 consensus_7059#2 ---CCGGTTTTATTTTTGTTACAACGTTTACAACCAGCCACGTCGTTCGTAACGGATTGT 57 ** * consensus_7059#0 GGNAACGTNCCGGAGNGACATTCATTACCGCTTGGGAATTTGGGGACCCAAAAACAANTT 358 consensus_7059#3 GAGAGAGAGGAGGAACAATAAAAAGAGTAGCATTGAAAGA-AAAAACGAGAAAACACTCG 98 consensus_7059#1 GAGCAACTCTAGACACCGCAGCAAGTGTTGTTGAATGAGTAGATTACAACCAAACAAGTC 137 consensus_7059#2 TTCAACGTGCGCCCAAACCTACCCCCCCCCCCCCCCTGGCCAGACACCGAACAGCGCAAC 117 ** * * consensus_7059#0 TTGGGTCTTACACTAAAACGCGGCATTCCCAGCCTTACANTACGTTACCNATTCACCCTT 418 consensus_7059#3 CAAAGTACTGACGGAAAGTGGAGC-----TAACGCTACACCG----ACCAAAACGCCC-- 147 consensus_7059#1 CCATGTTTAAGAAAGAAAGGCTTT--TGTTTGCACCATCGTTTGCTTTCCAACTTCCTCT 195 consensus_7059#2 ACACCCCTTGAAACCAGCTTCCTCTCCTCCCCCTTTGCCTGCTGATTGACAAAATCATCT 177 * * * * consensus_7059#0 GGCCAAGTANCT----------TTGGAAACGCCCAATATAACATATACGTATCACAAAAG 468 consensus_7059#3 GTCCCGATGGAG----------GAGGAGGACAAGAAAGTGGC-TGCAGGCGACGCTGATG 196 consensus_7059#1 AACGAAAAGGATCAACCGTGTTTTAACGACAGCGGATACAGC-TTTAGGCCTTAGGCAAA 254 consensus_7059#2 TACAAAAGCAATCATTTATTAAGCAGAAGGCGCAGAAGGAAGAAAACAAAGCAAAGGGAA 237 * * consensus_7059#0 ANACTGTCAAACAAAGNTCATAAGGGGNAGGTGG-CACCTTGAATTGACAAAGGAGGANG 527 consensus_7059#3 CCTCGGCCGATCCGAAGGAGCTGGCCAAGAATGAACTGTCCGAGGTGCACAAGCATGAAT 256 consensus_7059#1 AGTTCACCACTAATGGTTGACGACGTTAGTGTTG-CGCTATTGCGCTACAGATCCCTCTC 313 consensus_7059#2 AATTTATC--TTTTAAGTAGTAGTGTATAGACA--CATCAAACAACGCCCCTTTAAGAGG 293 * * consensus_7059#0 CGG----GTACCCCCCA-TNNGNGTAATTCACGTTTAAAACN--CCNCCNGCNNTATNTG 580 consensus_7059#3 CGGCACCGTTCGATCCG-TCGATCGAACCGCTGCTGAGAGACAACCCCCGGCGGTTCGTG 315 consensus_7059#1 CAGCAAAACACGACAAGCTTTGTTTTCCTGCAGCCGGAAGCAATATCCTTGTGATTGCGA 373 consensus_7059#2 AGGGACGAGAGAGCGCA---AGTGTGTGTGAGTGCGCGCGCCTTCTCTTTCTCTTCGCCG 350 * * consensus_7059#0 AAAAAATCC--CCACTNGTNAG-TAANTGGCATACACAGAANGGGAGGGAGACTTCCACG 637 consensus_7059#3 ATCTTCCCCATCCAGTATCCGGACATTTGGCAAATGTACAAGAAGGCGGAAGCTTCCTTC 375 consensus_7059#1 CAAGCAGTGGACTATTGACCGTACACCTCTTGAACCCAACGAGGACAAAAGGATTCGGNA 433 consensus_7059#2 ATCACGTCCCCACTTCCGTGCGAAACCGTTTGAAAATCCTATGGAACTTATCGTTTAAAC 410 * * * ** consensus_7059#0 CAACAAATAGAGNAAAANA---TTGATGAANAAGATGGCGA-AACAG---------CCCT 684 consensus_7059#3 TGGACGGTGGAAGAGGTTGA-TCTGTCCAAGGACATGAAAG-ACTGGG-----AGACGCT 428 consensus_7059#1 TTAGTCAGATCTCACTTTGACTTTGCTCGGGTAAACGCAAA-ACAAGGGTAACAGCTGTT 492 consensus_7059#2 TCAGCT-TATTTGTATGTGTGTGTGTTTGTGCGATTGGTGATGATTAATGTACGTGTGCT 469 ** * * consensus_7059#0 TGGGGGATAANAAGAGTATNCCCACCCT---TGTGTNAAANTGCCCCAAACCG--CATNA 739 consensus_7059#3 GAAACCAAGCGAACGCCACTTCATCTCC---CACGTGCTGGCCTTCTTTGCTG--CGTCC 483 consensus_7059#1 CTGCTGTAACGCGCATCATACCCCCCTTAGTTGNGAATAGGTTCTCTTAGGTAGTCNGTT 552 consensus_7059#2 CTAGTTT---GTTTGTTTTGTTTATTTTGTTACTGCACAAGAGCTCAATTTTGATCGT-- 524 * * * consensus_7059#0 AATCATAGCCC-------CGNTTTTGNGGGTGANAAATANAACCAANAAG-ACTCTCNAG 791 consensus_7059#3 GACGGTATCGTGAA----CGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTAC 539 consensus_7059#1 ATCGGCATCGGGAAGCCATAACACCTTACTTTCCGAACTAAGCTCAAACAGGCCAACAAC 612 consensus_7059#2 AACCAGATCAGTAGGAAAAGGAAGGAAAACAAAAGAATGGTCCATGAAGGTCCAGGCAAT 584 * * * * * * consensus_7059#0 AGAGCGTAAGCANCTCAAAAGCTATACAAGNCAAACCNAACNCACAGACA-CAACAN--- 847 consensus_7059#3 GGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCGATGGAAAATGTGCACAGCGAGATGTA 599 consensus_7059#1 ACGAAACTTCAACCTTACACACCCCAGTATTCTATTCAGACTGTCCAAATCCGATACGNA 672 consensus_7059#2 ATATAGAGCCTAGCAGGGTGGATT--GCGTGTTGTTTAGTAGAATTAAAGTCGTCTTTTT 642 * * consensus_7059#0 -- consensus_7059#3 C- 600 consensus_7059#1 AT 674 consensus_7059#2 TC 644 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||