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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1806 fasta sequence
[GACCCACGCGTCCGGTGCAAGCACGATTTGTTACATTGTGTAACTGTGATTTTCACAAATTATATTAATTTTGATTTCATAAAACAGTCAATGTGAAAAATACGGCTTATTTCCGCGCTCAAAATGATAAGGCACTGTTCTTTTTCTTTTTCAAAATATTATATTTTAGGCATTCGTGCTAGACGAAACCATAAGGGTTAAATTCGAATGTTATCAACAAACACAAAACAAAAAAAGAAAACAACCCGCAACCCCAATCAGCGTAAAAAAGTG--TCCCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTACTGGAAAATGGTTTCGTTGCGGTAAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTCGTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGTACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAA-GGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTACGTTG-AATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATGGAGCGGAAAAGCGATCTCGTGCAACCGGTGATAACGCCACGCTTCGCTATCACCTGTGACGAGCCGCTAATGCGCGAACTGGGCAAGCTGGCCAAGCAGTACAGCCTGAACGTGCAAACGCATGTGTCGGAAAATTTGGGCGAAATTGAAACGGTGAAGCAGCAGTACCCGAGCGCCCCTCACTACTCGGGCGTGTACGATGAGGTTGGACTGCTGACGGACCGGACCGTGCTCGCTCACGGTGTCCATCTGGAGGACGCCGAGCTGAAGGTGCTGGCCGCCCGTGGCACCTCCGTAGCGCACTGTCCCAGCTCCAACACAAACCTTGGGTCGGGTTTTTGTGACGTTCGGCGCCTGCTGGATGCCCGCG-TCAAGGTC-GGCCTGGGAACG-GACGTGTCCGGTGGAAGCGACATGAGCATACTGGCAGCAATGCG-TGCCGCTCTCGGCGTATCGCAACATTTGAACTTTATGAAAACGCAAGACGTCAAAGGGACGGGCAAATTGGAGCAAAGTGCAGCGCTGAAGGGAGAGAAATACATTCCACTGTCTTACAAGCAGGCACTGTTTTTGGCCACACTGGGAGGAGCTCAAGCGCTGGCACTTGACGAGAAGATCGGAAACTTCCAGAAAGGCAAACAGTTTGACGCCTTATTAATCGATACGGAACCGCAGCCCATCGGAGGCTACAAACTGCCGGCAAGCTTAACGAAGGACAAAACCAAAGTGCAATTATTGTTGGAGTTGGTGCAAAAGTTCGTCTACGTTGGTGACGATAGGAACATTGTGAAGGTGTACGTTGCGGGCAAACAAATTAAAACATAGGAAAGGTGCCTTTATTAATTGCCTCGGAAGATATTTTATACCTATAAACCACTCAACAACGAACAAATAAAACAAATAAATTTTT]
[+] EMBL BM650156 [GACCCACGCGTCCGGTGCAAGCACGATTTGTTACATTGTGTAACTGTGATTTTCACAAATTATATTAATTTTGATTTCATAAAACAGTCAATGTGAAAAATACGGCTTATTTCCGCGCTCAAAATGATAAGGCACTGTTCTTTTTCTTTTTCAAAATATTATATTTTAGGCATTCGTGCTAGACGAAACCATAAGGGTTAAATTCGAATGTTATCAACAAACACAAAACAAAAAAAGAAAACAACCCGCAACCCCAATCAGCGTAAAAAAGTG TCCCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTTCTGGAGAATGGTTTCGTTGCGGTGAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTCGTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGTACAAGTACGTGGTGAACAA ]
[+] EMBL BM582996 [ ccgAAAAAAGAAAACAACCCGCAACCCCAATCAGCGTAAAAAAGTGTTTCCCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTACTGGAAAATGGTTTCGTTGCGGTAAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTCGTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGTACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAA GGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTACGTTGAAATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATGGAGCGGAAAAGCGATCT ]
[+] EMBL BM637911 [ ccgGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTACTGGAAAATGGTTTCGTTGCGGTAAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTCGTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGTACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAAGGGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTACGTTG AATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATGGAGCGGAAAAGCGATCTCGTGCAACCGGTGATAACGCCACGCTTCGCTATCACCTGTGACGAGCCGCTAATGCGC ]
[+] EMBL CNS09D2Q [ AACCGAACAAGATTCTGGTTGACGAGATGGTGCGTCAA GGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTACGTTG AATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATGGAGCGGAAAAGCGATCTCGTGCAACCGGTGATAACGCCACGCTTCGCTATCACCTGTGACGAGCCGCTAATGCGCGAACTGGGCAAGCTGGCCAAGCAGTACAGCCTGAACGTGCAAACGCATGTGTCGGAAAATTTGGGCGAAATTGAAACGGTGAAGCAGCAGTACCCGAGCGCCCCTCACTACTCGGGCGTGTACGATGAGGTTGGACTGCTGACGGACCGGACCGTGCTCGCTCACGGTGTCCATCTGGAGGACGCCGAGCTGAAGGTGCTGGCCGCCCGTGGCACCTCCGTAGCGCACTGTCCCAGCTCCAACACAAACCTTGGGTCGGGTTTTTGTGACGTTCGGCGCCTGCTGGATGCCCGCG TCAAGGTC GGCCTGGGAACG GACGTGTCCGGTGGAAGCGACATGAGCATACTGGCAGCAATGCG TGCCGCTCTCGGCGTATCGCAACATTTGAACTTTATGAAAACGCAAGACGTCAAAGGGACGGGCAAATTGGAGCAAAGTGCAGCGCTGAAGGGAGAGAAATACATTCCACTGTCTTACAAGCAGGCACTGTTTTTGGCCACACTGGGAGGAGCTCAAGCGCTGGCACTTGACGAGAAGATCGGAAACTTCCAGAAAGGCAAACAGTTTGACGCCTTATTAATCGATACGGAACCGCAGCCCATCGGAGGCTACAAACTGCCGGCAAGCTTAACGAAGGACAAAACCAAAGTGCAATTATTGTTGGAGTTGGTGCAAAAGTTCGTCTACGTTGGTGACGATAGGA ]
[-] EMBL CNS09D2R [ TGCCCGCGTTCAAGGTCGGGCCTGGGAACGCGACGTGTCCGGTGGAAGCGACATGAGCATACTGGCAGCAATGCGCTGCCGCTCTCGGCGTATCGCAACATTTGAACTTTATGAAAACGCAAGACGTCAAAGGGACGGGCAAATTGGAGCAAAGTGCAGCGCTGAAGGGAGAGAAATACATTCCACTGTCTTACAAGCAGGCACTGTTTTTGGCCACACTGGGAGGAGCTCAAGCGCTGGCACTTGACGAGAAGATCGGAAACTTCCAGAAAGGCAAACAGTTTGACGCCTTATTAATCGATACGGAACCGCAGCCCATCGGAGGCTACAAACTGCCGGCAAGCTTAACGAAGGACAAAACCAAAGTGCAATTATTGTTGGAGTTGGTGCAAAAGTTCGTCTACGTTGGTGACGATAGGAACATTGTGAAGGTGTACGTTGCGGGCAAACAAATTAAAACATAGGAAAGGTGCCTTTATTAATTGCCTCGGAAGATATTTTATACCTATAAACCACTCAACAACGAACAAATAAAACAAATAAATTTTT]
consensusID : consensus_7061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[CGACCCACGCGTCCGCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTTCTGGAGAATGGTTTCGTTGCGGTGAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGGCGTATCTGAATACAAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGATTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGCACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAAGGGCAGCGCGGTTTCGTT]
[+] EMBL BM605226 [CGACCCACGCGTCCGCTTCCGGCAATTTGGTATGAAACGTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATTGGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTTCTGGAGAATGGTTTCGTTGCGGTGAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGGCGTATCTGAATACAAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATCGATTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTGCTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTTGCTTCCCGAGTGCACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCATGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGTCAAGGGCAGCGCGGTTTCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7061#0 GACCCACGCGTCCGGTGCAAGCACGATTTGTTACATTGTGTAACTGTGATTTTCACAAAT 60
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 TATATTAATTTTGATTTCATAAAACAGTCAATGTGAAAAATACGGCTTATTTCCGCGCTC 120
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 AAAATGATAAGGCACTGTTCTTTTTCTTTTTCAAAATATTATATTTTAGGCATTCGTGCT 180
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 AGACGAAACCATAAGGGTTAAATTCGAATGTTATCAACAAACACAAAACAAAAAAAGAAA 240
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 ACAACCCGCAACCCCAATCAGCGTAAAAAAGTGTCC-CTTCCGGCAATTTGGTATGAAAC 299
consensus_7061#1 ---------------------CG-ACCCACGCGTCCGCTTCCGGCAATTTGGTATGAAAC 38
** * * * **** ***********************
consensus_7061#0 GTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATT 359
consensus_7061#1 GTGTAGCCGTGCGGCAGCATTAATATTTAGCTCTCCATCACGATGAAGCAGGTTTTTATT 98
************************************************************
consensus_7061#0 GGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTACTGGAAAATGGTTTCGTT 419
consensus_7061#1 GGTCAAATCGTTCACTCCAAATCGCTCGATGAGCTCGAGGTTCTGGAGAATGGTTTCGTT 158
***************************************** ***** ************
consensus_7061#0 GCGGTAAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGTC 479
consensus_7061#1 GCGGTGAACGATGGCATGATTGAAGCCGTCGGTGATCACTCGCAATTGGATGGTTCAGGC 218
***** **************************************************** *
consensus_7061#0 GTATCTGAATACGAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATC 539
consensus_7061#1 GTATCTGAATACAAACGAATCGTGCTATCGCCTTCGCAGTTCCTTCTTCCCGGGCTCATC 278
************ ***********************************************
consensus_7061#0 GACTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTG 599
consensus_7061#1 GATTGTCACATCCATGCCCCGCAAGTGCCCAACATTGGTCTGGGGCTAGATAAGCCGCTG 338
** *********************************************************
consensus_7061#0 CTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTT 659
consensus_7061#1 CTGGAGTGGCTGGAATCGTACACCTTTCCGCTGGAAGCGAACTATCGTGATGCTGAGTTT 398
************************************************************
consensus_7061#0 GCTTCCCGAGTGTACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCA 719
consensus_7061#1 GCTTCCCGAGTGCACAAGTACGTGGTGAACAATACGATTAGTCATGGTACAACAACGGCA 458
************ ***********************************************
consensus_7061#0 TGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGT 779
consensus_7061#1 TGCTATTTCGCTTCCATCTTTACGGAAACGAACAAGATTCTGGTTGACGAGATGGTGCGT 518
************************************************************
consensus_7061#0 CAAGGGCAGCGCGGTTTCGTTGGAAAAGTCTCCTCGAATCAAATGTGTCCGGATTTCTAC 839
consensus_7061#1 CAAGGGCAGCGCGGTTTCGTT--------------------------------------- 539
*********************
consensus_7061#0 GTTGAATGCAACACGGAAACATCGGTAAAGGACAATGTAGACTTCATACGCTACGTAATG 899
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 GAGCGGAAAAGCGATCTCGTGCAACCGGTGATAACGCCACGCTTCGCTATCACCTGTGAC 959
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 GAGCCGCTAATGCGCGAACTGGGCAAGCTGGCCAAGCAGTACAGCCTGAACGTGCAAACG 1019
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 CATGTGTCGGAAAATTTGGGCGAAATTGAAACGGTGAAGCAGCAGTACCCGAGCGCCCCT 1079
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 CACTACTCGGGCGTGTACGATGAGGTTGGACTGCTGACGGACCGGACCGTGCTCGCTCAC 1139
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 GGTGTCCATCTGGAGGACGCCGAGCTGAAGGTGCTGGCCGCCCGTGGCACCTCCGTAGCG 1199
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 CACTGTCCCAGCTCCAACACAAACCTTGGGTCGGGTTTTTGTGACGTTCGGCGCCTGCTG 1259
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 GATGCCCGCGTCAAGGTCGGCCTGGGAACGGACGTGTCCGGTGGAAGCGACATGAGCATA 1319
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 CTGGCAGCAATGCGTGCCGCTCTCGGCGTATCGCAACATTTGAACTTTATGAAAACGCAA 1379
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 GACGTCAAAGGGACGGGCAAATTGGAGCAAAGTGCAGCGCTGAAGGGAGAGAAATACATT 1439
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 CCACTGTCTTACAAGCAGGCACTGTTTTTGGCCACACTGGGAGGAGCTCAAGCGCTGGCA 1499
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 CTTGACGAGAAGATCGGAAACTTCCAGAAAGGCAAACAGTTTGACGCCTTATTAATCGAT 1559
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 ACGGAACCGCAGCCCATCGGAGGCTACAAACTGCCGGCAAGCTTAACGAAGGACAAAACC 1619
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 AAAGTGCAATTATTGTTGGAGTTGGTGCAAAAGTTCGTCTACGTTGGTGACGATAGGAAC 1679
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 ATTGTGAAGGTGTACGTTGCGGGCAAACAAATTAAAACATAGGAAAGGTGCCTTTATTAA 1739
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 TTGCCTCGGAAGATATTTTATACCTATAAACCACTCAACAACGAACAAATAAAACAAATA 1799
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 AATTTTT 1806
consensus_7061#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||