These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence [CAGAATCGCCCGAGGTTAAACGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATATGGGACTAGTGCAGAAATAGCGGTTACGCAAAGTAACGAGGTATGTGTGTAAAAGTTTAATGTTAAATTTATTTTTAATTATTACTTTAAAGCATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTTCAAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGTAGTTAATCTGTTATGATCGTTTTGTCACGACTTNTTTTGTATCTNTTATTTTTNTACTTCGAAGCAGTCATCATTNACGACGGAAAGTACCGTGCAGAANACGTGTGTAGTGTGATGCCCTAGTGTGAGCTGTCNAACTCATGTAAAGCCTAACGCAGTGGTGTGTATGGTTATGCTAANNGGCTTCATAGAGANATCACTTATATTCTCTAAANACAAAACCCAACGCACAAAAGCAANNACCAACACATATAACCTTACTACTNTAACACACCCACANAAATAAACCCCAGCANCAGGACCCAANTCCTAACTAACTNCCCACGAGAAAAAAAAAAAAACAAAANCANAGCANAACCAAACAGCGGGACATNGATTACGACGCGCNCCGNAACAGCNTNATACACCACTATCNAGGNAGGCANCAGGTCCAAACANCAANCNCGCACTGGGAGACACAGGACACCAGGCCCGACACAAAACACANCGGNTCAATGAGACTCTGNGCCAAAA] [+] EMBL AL931281 [CAGAATCGCCCGAGGTTAAACGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATATGGGACTAGTGCAGAAATAGCGGTTACGCAAAGTAACGAGGTATGTGTGTAAAAGTTTAATGTTAAATTTATTTTTAATTATTACTTTAAAGCATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTTCAAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGTAGTTAATCTGTTATGATCGTTTTGTCACGACTTNTTTTGTATCTNTTATTTTTNTACTTCGAAGCAGTCATCATTNACGACGGAAAGTACCGTGCAGAANACGTGTGTAGTGTGATGCCCTAGTGTGAGCTGTCNAACTCATGTAAAGCCTAACGCAGTGGTGTGTATGGTTATGCTAANNGGCTTCATAGAGANATCACTTATATTCTCTAAANACAAAACCCAACGCACAAAAGCAANNACCAACACATATAACCTTACTACTNTAACACACCCACANAAATAAACCCCAGCANCAGGACCCAANTCCTAACTAACTNCCCACGAGAAAAAAAAAAAAACAAAANCANAGCANAACCAAACAGCGGGACATNGATTACGACGCGCNCCGNAACAGCNTNATACACCACTATCNAGGNAGGCANCAGGTCCAAACANCAANCNCGCACTGGGAGACACAGGACACCAGGCCCGACACAAAACACANCGGNTCAATGAGACTCTGNGCCAAAA] [+] EMBL BM578883 [ ccGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATATGGGACTAGTGCAGAAATAGCGGTTACGCAAAGTAACGAGGTATGTGTGTAAAAGTTTAATGTTAAATTTATTTTTAATTATTA TTTAAAGCATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTT AAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGTAGTTAATCTGTTTTGATCGTTTTGT TCGACTT TTTTGTTTCT TTATTTTT TACTTCGAAGCAGTCATCATTTA GACGGAAAGTACCGTGCAGAA ACGTGTGTAGTGTGATG ] consensusID : consensus_7064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CACTGGTTTCCCGTCTGCTGGAGTACACGCCGGGCACGAGAATTACTCCGATGCAAGCATGTGCCCATCCGTTCTTCAACGAATTGCGAGAAGGCAGCAAGTATCTGCCGAACGGTCGCGAATTTCCACCGTTGTTCAACTTCACCGAGCAAGAGCTTGCCATTCAGCCAAGTCTGAACCTGATTCTGAGGCCCAGAAACCAAAACGAGGCCGCTTCCAAGGCAGGACAATCGTCAAGCGGATCGATGGAAGGTGGCAGCGGCAGCAGTGGCAACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTAGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCTGGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACGAACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTANGAAGC] [+] EMBL BX623731 [CACTGGTTTCCCGTCTGCTGGAGTACACGCCGGGCACGAGAATTACTCCGATGCAAGCATGTGCCCATCCGTTCTTCAACGAATTGCGAGAAGGCAGCAAGTATCTGCCGAACGGTCGCGAATTTCCACCGTTGTTCAACTTCACCGAGCAAGAGCTTGCCATTCAGCCAAGTCTGAACCTGATTCTGAGGCCCAGAAACCAAAACGAGGCCGCTTCCAAGGCAGGACAATCGTCAAGCGGATCGATGGAAGGTGGCAGCGGCAGCAGTGGCAACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTAGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCTGGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACGAACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTANGAAGC] consensusID : consensus_7064#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [CCGCCCACGCGTCCGGGCAGCGGCAGCAGTGGCAACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTAGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCTGGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACGAACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTAGGAAGCGACTGTGTACAAGTGTTTGCACGCAATTTTGAGAACCACGGCCAGCAAACGGCACACAAAATCAATGAAAAGTTAAAAAAAATTAAGTAGTAAAACCGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATA] [+] EMBL BM629231 [CCGCCCACGCGTCCGGGCAGCGGCAGCAGTGGCAACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTAGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCTGGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACGAACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTAGGAAGCGACTGTGTACAAGTGTTTGCACGCAATTTTGAGAACCACGGCCAGCAAACGGCACACAAAATCAATGAAAAGTTAAAAAAAATTAAGTAGTAAAACCGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATA] consensusID : consensus_7064#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [ATATTANCATATATGACTATNAGACATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTTAAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGGTAAGTTTAATCTGTTTTGATCGTTTTGTTCGACTTTTTTGTTTCTTTATTTTTTACTTCGAAGCAGTCATCATTTAGACGGAAAGTACCGTGCAGAAACGTGTGTAGTGTGATGCCCTAGTGTGAGTGTAAAATCATGTAAAGCCCTACGAGTGGTGTGT] [+] EMBL BX622515 [ATATTANCATATATGACTATNAGACATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGTGCAACATGAAAAAATCATTTAAAAAACATGTTAAAGAAGCAACACAAAGCGACGCGTGGCATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGGTAAGTTTAATCTGTTTTGATCGTTTTGTTCGACTTTTTTGTTTCTTTATTTTTTACTTCGAAGCAGTCATCATTTAGACGGAAAGTACCGTGCAGAAACGTGTGTAGTGTGATGCCCTAGTGTGAGTGTAAAATCATGTAAAGCCCTACGAGTGGTGTGT] consensusID : consensus_7064#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [CACCCCACCGGAAGCGATCGCACTGGTNTCCCGTCTGCTGGANTACACATCCGGGNACGAGAATTACTCCGATNCAAGCATGTGCCCATCCGTTCTTCAACGAATTGCTGAGAAGGCAGCAAGTATCTGCCGAACGGTCGCGAATTTCCACCGNTGTTCANCTTCACCGAGCAAGAGCTTGCCNGTTCATCCAATCTCTGAACCTGATTCTGAGGCCCACAAACCTGAACGAGGCCGCTTCCANGGCAGTGACAATCTGTCAATCCGGATCTGATGGAAGGTGGCACGCGGCAGCAG] [+] EMBL BX621949 [CACCCCACCGGAAGCGATCGCACTGGTNTCCCGTCTGCTGGANTACACATCCGGGNACGAGAATTACTCCGATNCAAGCATGTGCCCATCCGTTCTTCAACGAATTGCTGAGAAGGCAGCAAGTATCTGCCGAACGGTCGCGAATTTCCACCGNTGTTCANCTTCACCGAGCAAGAGCTTGCCNGTTCATCCAATCTCTGAACCTGATTCTGAGGCCCACAAACCTGAACGAGGCCGCTTCCANGGCAGTGACAATCTGTCAATCCGGATCTGATGGAAGGTGGCACGCGGCAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7064#1 ------------------------------------------------------------ consensus_7064#4 ------------------------------------------------------------ consensus_7064#2 ------------------------------------------------------------ consensus_7064#0 CAGAATCGCCCGAGGTTAAACGAAAGGAAAGGGGATCATCGCACTTGCAAACGCAGCGAT 60 consensus_7064#3 ------------------------------------------------------------ consensus_7064#1 ------------------------------------------------------------ consensus_7064#4 ------------------------------------------------------------ consensus_7064#2 ------------------------------------------------------------ consensus_7064#0 GTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATATGGGACTAGTGCAG 120 consensus_7064#3 ------------------------------------------------------------ consensus_7064#1 ----------------------------------------------------------CA 2 consensus_7064#4 --------------------------------------CACCCCACCGGAAGCGATCGCA 22 consensus_7064#2 --------------------------CCGCCCACGCGTCCGGGCAGCGGCAGCAGTGGCA 34 consensus_7064#0 AAATAGCGGTTACGCAAAGTAACGAGGTATGTGTGTAAAAGTTTAATGTTAAATTTATTT 180 consensus_7064#3 ------------------------------------------------------ATATTA 6 consensus_7064#1 CTGGTT-TCCCGTCTGCTGGAGTACACG-CCGGGCACGAGAATTACTCCGATGCAAGCAT 60 consensus_7064#4 CTGGTN-TCCCGTCTGCTGGANTACACATCCGGGNACGAGAATTACTCCGATNCAAGCAT 81 consensus_7064#2 ACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCTA 94 consensus_7064#0 TTAATTATTACTTTAAAGCATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGT 240 consensus_7064#3 NCATATATGACTATNAGACATCGGGATCGTCAAGAATGCTATACATTGATGTATCGCTGT 66 * * * * * * consensus_7064#1 GTGCCC--ATC-CGTTCTTCA-ACGAATTGC---GAGAAGGCA-GCAAGTATCTGCCGAA 112 consensus_7064#4 GTGCCC--ATC-CGTTCTTCA-ACGAATTGCT--GAGAAGGCA-GCAAGTATCTGCCGAA 134 consensus_7064#2 GTGCCA--GTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAA-TCCTGTAGCGGTGCAG 151 consensus_7064#0 GCAACATGAAAAAATCATTTAAAAAACATGTTCAAAGAAGCAACACAAAGCGACGCGTGG 300 consensus_7064#3 GCAACATGAAAAAATCATTTAAAAAACATGTT-AAAGAAGCAACACAAAGCGACGCGTGG 125 * * * * * ** * * * consensus_7064#1 CGGTCGCGAATTTC--CACCGTT---GTTCAACTTCACCGAGCAAGAG--CTTGCCA-TT 164 consensus_7064#4 CGGTCGCGAATTTC--CACCGNT---GTTCANCTTCACCGAGCAAGAG--CTTGCCNGTT 187 consensus_7064#2 CTGGTGGTAGCGCCGGCGCTGGC---GTTGGATCGGACGATATGGCAG--CC-GCAAGTG 205 consensus_7064#0 CATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATG-TAG--TTAATCTGTT 357 consensus_7064#3 CATGTGCGGATGTTCGTAATGGTATGGTCCAAACACAGAAGATGGTAAGTTTAATCTGTT 185 * * * ** * * * consensus_7064#1 CAGCCAAG-TCTGAACCTG--ATTCTGAGGCCCAGAAACC-AAAA--CGAGGCCGCTTCC 218 consensus_7064#4 CATCCAATCTCTGAACCTG--ATTCTGAGGCCCACAAACC-TGAA--CGAGGCCGCTTCC 242 consensus_7064#2 GGGGTGATGCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGA--TGGGTTAGCTTTA 263 consensus_7064#0 ATGATCGTTTTGTCACGACTTNTTTTGTATCTNTTATTTTTNTACTTCGAAGCAGTCATC 417 consensus_7064#3 TTGATCGTTTTGTT-CGACTTTTT---TGTTTCTTTATTTTTTACTTCGAAGCAGTCATC 241 * * * consensus_7064#1 AAGGCAG-GACAATC-GTCAAGC-GGAT-C-GATGGAAGGTGGCA-GCGGCAGCAGTGGC 272 consensus_7064#4 ANGGCAGTGACAATCTGTCAATCCGGAT-CTGATGGAAGGTGGCACGCGGCAGCAG---- 297 consensus_7064#2 ATTGTGT--ACGAACGACAACAACCAGC-CACAAGGAGCAAAATGTGCTTTAAACCTAGA 320 consensus_7064#0 ATTNACGACGGAAAGTACCGTGCAGAANACGTGTGTAGTGTGATGCCCTAGTGTGAGCTG 477 consensus_7064#3 ATTTA-GACGGAAAGTACCGTGCAGAAA-CGTGTGTAGTGTGATGCCCTAGTGTGAG-TG 298 * * * * * * consensus_7064#1 AACGGTGGTGCCGGCAGCTCATCTGGCAGCGGTGGCGTTGGAGGTAGTGGCGGTGGAGCT 332 consensus_7064#4 ------------------------------------------------------------ consensus_7064#2 GGAGAATAATAGCATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACT 380 consensus_7064#0 TCNAACTCATGTAAAGCCTAACGCAGTGGTGTGTATGGTTATGCTAANNGGCTTCATAGA 537 consensus_7064#3 TAAAA-TCATGTAAAGCCCTACG-AGTGGTGTGT-------------------------- 330 consensus_7064#1 AGTGCCAGTAGCGCTGGCGATGCGAGCAACTTGGCGCAGCAATCCTGTAGCGGTGCAGCT 392 consensus_7064#4 ------------------------------------------------------------ consensus_7064#2 TGTCCTCTAGCACTCGAACTGGGCGTTACTGTCTGACGTAGACACTAGGAAGCGACTGTG 440 consensus_7064#0 GANATCACTTATATTCTCTAAANACAAAACCCAACGCACAAAAGCAANNACCAACACATA 597 consensus_7064#3 ------------------------------------------------------------ consensus_7064#1 GGTGGTAGCGCCGGCGCTGGCGTTGGATCGGACGATATGGCAGCCGCAAGTGGGGGTGAT 452 consensus_7064#4 ------------------------------------------------------------ consensus_7064#2 TACAAGTGTTTGCACGCAATTTTGAGAACCACGGCCAGCAAACGGCACACAAAATCAATG 500 consensus_7064#0 TAACCTTACTACTNTAACACACCCACANAAATAAACCCCAGCANCAGGACCCAANTCCTA 657 consensus_7064#3 ------------------------------------------------------------ consensus_7064#1 GCAAACACCTGTCAGCCTTCTGCTGCCACCTCATCGATGGGTTAGCTTTAATTGTGTACG 512 consensus_7064#4 ------------------------------------------------------------ consensus_7064#2 AAAAGTTAAAAAAAATTAAGTAGTAAAACCGAAAGGAAAGGGGATCATCGCACTTGCAAA 560 consensus_7064#0 ACTAACTNCCCACGAGAAAAAAAAAAAAACAAAANCANAGCANAACCAAACAGCGGGACA 717 consensus_7064#3 ------------------------------------------------------------ consensus_7064#1 AACGACAACAACCAGCCACAAGGAGCAAAATGTGCTTTAAACCTAGAGGAGAATAATAGC 572 consensus_7064#4 ------------------------------------------------------------ consensus_7064#2 CGCAGCGATGTTGATCGATAACAAGCAAAACTAGCTGTGCGTAATGTCGGACATA----- 615 consensus_7064#0 TNGATTACGACGCGCNCCGNAACAGCNTNATACACCACTATCNAGGNAGGCANCAGGTCC 777 consensus_7064#3 ------------------------------------------------------------ consensus_7064#1 ATGCTCAGAATAAGAGTGCAAGGAAAAACTAAAGGGAAAACAATACTTGTCCTCTAGCAC 632 consensus_7064#4 ------------------------------------------------------------ consensus_7064#2 ------------------------------------------------------------ consensus_7064#0 AAACANCAANCNCGCACTGGGAGACACAGGACACCAGGCCCGACACAAAACACANCGGNT 837 consensus_7064#3 ------------------------------------------------------------ consensus_7064#1 TCGAACTGGGCGTTACTGTCTGACGTAGACACTANGAAGC 672 consensus_7064#4 ---------------------------------------- consensus_7064#2 ---------------------------------------- consensus_7064#0 CAATGAGACTCTGNGCCAAAA------------------- 858 consensus_7064#3 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||