These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 717 fasta sequence [CCGGCACAATCTGTCCCTGTTCAGTTTACTGTTTTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAAATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATACGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAG-CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC-GATCCGGGACGTGAAGGCGGACAGCATCGGCAAGCT--AGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCC-GGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGT-GCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGG] [+] EMBL BM598248 [CCGGCACAATCTGTCCCTGTTCAGTTTACTGTTTTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAGATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATACGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAGCCGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTCGGATCAGGGACGTGAAGGCGGACAGCATCGGCAGCCTTGGGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACG ] [+] EMBL BM606491 [ ccgCAATCTGTCCCTGTTCAGTTTACTGTTTTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAGATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATACGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAG CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC GATCAGGGACGTGAAGGCGGACAGCATCGGCAAGCT GGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCC GGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGT GCCCGTCGGA ] [+] EMBL BM580652 [ ccgGTTTACTGTTGTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAAATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATACGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAG CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC GATCCGGGACGTGAAGGCGGACAGCATCGGCAAGCT AGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCC GGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGT GCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGG] [+] EMBL BM603383 [ ccggTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAAATCCAGCTCGTGGTCGATCTGG GATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATACGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAG CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC GATCCGGGACGTGAAGGCGGACAGCATCGGCAAGCT AGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGTGGCCCGTCGGAGGACT ] [+] EMBL BM595447 [ ccgGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAAATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATACGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAG CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC GATCCGGGACGTGAAGGCGGACAGCATCGGCAAGCT AGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCC GGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGT GCCCGTCGGA ] consensusID : consensus_7071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATACGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAGCGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTCGATCAGGGACGTGAAGGCGGACAGCATCGGCAAGCTGGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGTGCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGGCCGGCTGTACCTGCAGACGCGCGGCTCCAAGTTTGTCAAGTTCCAGGAGATTAAGATCCAGGAGCACAGCGATCAGGGTGCCGGTGGGCCACATTCCCCGTTCGCTGACGGATAATGTGCCGGGGCGAGACGACACGCTGCGCCCCAGCCG] [+] EMBL BM590744 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATACGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAGCGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTCGATCAGGGACGTGAAGGCGGACAGCATCGGCAAGCTGGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGTGCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGGCCGGCTGTACCTGCAGACGCGCGGCTCCAAGTTTGTCAAGTTCCAGGAGATTAAGATCCAGGAGCACAGCGATCAGGGTGCCGGTGGGCCACATTCCCCGTTCGCTGACGGATAATGTGCCGGGGCGAGACGACACGCTGCGCCCCAGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7071#0 CCGGCACAATCTGTCCCTGTTCAGTTTACTGTTTTTCGTGCATTATTTTCCGTAAAGTGT 60 consensus_7071#1 ------------------------------------------------------------ consensus_7071#0 AGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGA 120 consensus_7071#1 ------------------------------------------------------------ consensus_7071#0 GTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAA 180 consensus_7071#1 ------------------------------------------------------------ consensus_7071#0 GATTGCGCACCGCGAGCAAATCCAGCTCGTG-GTCGATCTGGACGATGTGGCCAGCTACA 239 consensus_7071#1 ----------------------CCGCCCACGCGTCCGCCCACGCG---TCCGCAGCTACA 35 * ** * * *** * ** * ******** consensus_7071#0 AGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGG 299 consensus_7071#1 AGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGG 95 **************************** ******************************* consensus_7071#0 ACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGC 359 consensus_7071#1 ACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGC 155 ******************************* **************************** consensus_7071#0 TCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATA 419 consensus_7071#1 TCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATA 215 **************************************************** ******* consensus_7071#0 CGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAGCGGTACGACGTGTACTTCA 479 consensus_7071#1 CGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAGCGGTACGACGTGTACTTCA 275 ********************** ************************************* consensus_7071#0 AGGCGCCGAGCATGGCGAAAGCGGTCTCGATCCGGGACGTGAAGGCGGACAGCATCGGCA 539 consensus_7071#1 AGGCGCCGAGCATGGCGAAAGCGGTCTCGATCAGGGACGTGAAGGCGGACAGCATCGGCA 335 ******************************** *************************** consensus_7071#0 AGCTAGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGG 599 consensus_7071#1 AGCTGGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGG 395 **** ***************************************** ************* consensus_7071#0 TCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGTCACGTCGATGA 659 consensus_7071#1 TCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGTCACGTCGATGA 455 ************************************************************ consensus_7071#0 GCTTCAAGCCGGCGATCGAGTGCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGG-- 717 consensus_7071#1 GCTTCAAGCCGGCGATCGAGTGCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGGCC 515 ********************************************************** consensus_7071#0 ------------------------------------------------------------ consensus_7071#1 GGCTGTACCTGCAGACGCGCGGCTCCAAGTTTGTCAAGTTCCAGGAGATTAAGATCCAGG 575 consensus_7071#0 ------------------------------------------------------------ consensus_7071#1 AGCACAGCGATCAGGGTGCCGGTGGGCCACATTCCCCGTTCGCTGACGGATAATGTGCCG 635 consensus_7071#0 ----------------------------- consensus_7071#1 GGGCGAGACGACACGCTGCGCCCCAGCCG 664 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||