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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 889 fasta sequence
[CCGGACGCATTAGCTTCAATTGGCTGGATTGTGTTGTGGCCCCGAACCATATTCACCGTGTATACTTTGTGTCTCTGTGTGTGTGTCTTTGTGTGTGTGAGTGGTGGTTTTGTATTGACGATCGCATGTGAATGACGATGGCAAAAGCGGTAATCGCTCTATTGTGGATCAATTTGATCTGCCTTATCAGTGTGGTAGTTTGCACCACCGACGCCTGGCCCAACAATGGTGGCCGCTCGACCGTGGATCAGGAGCTCGGCGAAAGCATGCTCACGAAGCAGCTGTTTGCCATCATCGATCTGTACAAGCAGGATGATCCGGTCGGGCTGCCGGACGCGTCCATACCCGACCCGATGCCCATCCCCGAGATCCGGCAGTCGTTCTCGTTCGCCAAGATGCATCTGCGCAATGTGCTGGCCCGCGGCATGTCCCGCTTCCGGATTCGCTACTTTCACACCGAGCTGAGCCGCATGTCCGTGACGGCGCTGGTAGCGATCGACGAGATCACGGTCAACGGCAACTACACGATGAGCACGTTCTTCAACCCGGGCCGAGGGCCCGGTTCAACGTGGTGATGCGCAACGTGCTGACCAAGGCGAACGTTTTCGCTGGCGGTCGAACGGGACGGCACGCTGCGCACGAACGACATCGAGCTGGACATTGCGTTCGACGAACATGGCGATGGACTTCCAGAACCTCGGCTTCATGGGCAGCATCTTCCAGAGCGTGGTCAACTCGGCGTCCAATCTCGTGTACGACACGATGAAGCCGTTTATGCTGTCCGAGGCGTACACGAAGATCCGGCACGAGGTGGACAGCCGGATGCTGAACATTACGGTCGAGAATCAGTTCACGCTGCCGAACTCGATCGCCCCGCTCGACATGGCGA]
[+] EMBL BM594420 [CCGGACGCATTAGCTTCAATTGGCTGGATTGTGTTGTGGCCCCGAACCATATTCACCGTGTATACTTTGTGTCTCTGTGTGTGTGTCTTTGTGTGTGTGAGTGGTGGTTTTGTATTGACGATCGCATGTGAATGACGATGGCAAAAGCGGTAATCGCTCTATTGTGGATCAATTTGATCTGCCTTATCAGTGTGGTAGTTTGCACCA ]
[+] EMBL BM583028 [ ccgCTTTGTGTCTCTGTGTGTGTGTCTTTGTGTGTGTGAGTGGTGGTTTTGTATTGACGATCGCATGTGAATGACGATGGCAAAAGCGGTAATCGCTCTATTGTGGATCAATTTGATCTGCCTTATCAGTGTGGTAGTTTGCACCACCGACGCCTGGCCCAACAATGGTGGCCGCTCGACCGTGGATCAGGAGCTCGGCGAAAGCATGCTCACGAAGCAGCTGTTTGCCATCATCGATCTGTACAAGCAGGATGATCCGGTCGGGCTGCCGGACGCGTCCATACCCGACCCGATGCCCATCCCCGAGATCCGGCAGTCGTTCTCGTTCGCCAAGATGCATCTGCGCAATGTGCTGGCCCGCGGCATGTCCCGCTTCCGGATTCGCTACTTTCACACCGAGCTGAGCCGCATGTCCGTGACGGCGCTGGTAGCGATCGACGAGATCACGGTCAACGGCAACTACACGATGAGCACGTTCTTCAACCCGGGCCGAGGGCCCGGTTCAACGTGGTGATGCGCAACGTGCTGACCAAGGCGAACGTTTTCGCTGGCGGTCGAACGGGACGGCACGCTGCGCACGAACGACATCGAGCTGGACATTGCGTTCGACGAACATGGCGATGGACTTCCAGAACCTCGGCTTCATGGGCAGCAT ]
[+] EMBL BX605961 [ TACAAGCAGGATGATCCGGTCGGGCTGCCGGACGCGTCCATACCCGACCCGATGCCCATCCCCGAGATCCGGCAGTCGTTCTCGTTCGCCAAGATGCATCTGCGCAATGTGCTTGCCCGCGGCATGTCCCGCTTCCGGATTCGCTACTTCCACACCGAGCTGAGCCGCATGTCCGTGACGGCGCTGGTAGCGATCGACGAGATCACGGTCAACGGTAACTACACGATGAGCACGTTCTTCAA CCGGGCCGAGGGCCC GTTCAACGTGGTGATGCGCAACGTGCTGACCAAGGCGAACG TTTCGCTGGCGGTCGAACGGGACGGCACGCTGCGCACGAACGACATCGAGCTGGACATTGCGTTCGACG ACATGGCGATGGACTTCCAGAACCTCGGCTTCATGGGCAGCATCTTCCAGAGCGTGGTCAACTCGGCGTCCAATCTCGTGTACGACACGATGAAGCCGTTTATGCTGTCCGAGGCGTACACGAAGATCCGGCACGAGGTGGACAGCCGGATGCTGAACATTACGGTCGAGAATCAGTTCACGCTGCCGAACTCGATCGCCCCGCTCGACATGGCGA]
consensusID : consensus_7077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence
[CCGCGCCATCGGACGCATTAGCTTCAATTGGCTAGATTGTGTTGTGGCCCCGAACCATATTCACCGTGTATACTTTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGTGTGTGTGTGGTGGTTTTGTATTGACGATCGCATGTGAATGACGATGGCCAAAGCGGTAATCGCTCTATTGTGGATCAATTTGATCTGCCTTATCAGTGTGGCAGTTTGCACCCCCGACGCCTGGCCCAAGAATGGTGGCCGCTCGACTGTGGATCAGGAGCTCGGCGAAAGCATGCTCACGAAGCAGCTGTTTGCCATCATCGATCTGTACAAGCAGGATGATCCGGTCGGGCTGCCGGACGCGTCCATACCCGACCCGATGCCCATCCCCGAGATCCGGCAGTCGTTCTCGTTCGCCAAGATGCATCTGCGCAATGTGCTTGCCCGCGGCATGTCCCGCTTCCGGATTCGCTACTTCCACACCGAGCTGAGCCGCATGTCCGTGACGGCGCTGGTAGCGATCGACGAGATCACGGTCAACGGTAACTACACGATGAGCACGTTCTTCAACCGGGC]
[+] EMBL BM657296 [CCGCGCCATCGGACGCATTAGCTTCAATTGGCTAGATTGTGTTGTGGCCCCGAACCATATTCACCGTGTATACTTTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGTGTGTGTGTGGTGGTTTTGTATTGACGATCGCATGTGAATGACGATGGCCAAAGCGGTAATCGCTCTATTGTGGATCAATTTGATCTGCCTTATCAGTGTGGCAGTTTGCACCCCCGACGCCTGGCCCAAGAATGGTGGCCGCTCGACTGTGGATCAGGAGCTCGGCGAAAGCATGCTCACGAAGCAGCTGTTTGCCATCATCGATCTGTACAAGCAGGATGATCCGGTCGGGCTGCCGGACGCGTCCATACCCGACCCGATGCCCATCCCCGAGATCCGGCAGTCGTTCTCGTTCGCCAAGATGCATCTGCGCAATGTGCTTGCCCGCGGCATGTCCCGCTTCCGGATTCGCTACTTCCACACCGAGCTGAGCCGCATGTCCGTGACGGCGCTGGTAGCGATCGACGAGATCACGGTCAACGGTAACTACACGATGAGCACGTTCTTCAACCGGGC]
[+] EMBL BM607119 [ ccgCGCATTAGCTTCAATTGGCTAGATTGTGTTGTGGCCCCGAACCATATTCACCGTGTATACTTTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTGTGTGTGTGTGGTGGTTTTGTATTGACGATCGCATGTGAATGACGATGGCCAAAGCGGTAATCGCTCTATTGTGGATCAATTTGATCTGCCTTATCAGTGTGGCAGTTTGCACCCCCGACGCCTGGCCCAAGAATGGTGGCCGCTCGACTGTGGATCAGGAGCTCGGCGAAAGCATGCTCACGAAGCAGCTGTTTGCCATCATCGATCTGTACAAGCAGGATGATCCGGTCGGGCTGCCGGACGCGTCCATACCCGACCCGATGCCCATCCCCGAGATCCGGCAGTCGTTCTCGTTCGCCAAGATGCATCTGCGCAATGTGCTTGCCCGCGGCATGTCCCGCTTCCGGATTCGCc ]
consensusID : consensus_7077#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence
[AAGAATCCNGCAGCGATNGACAAGGCGAACGTTTCTGCTGGCCGTCGAACGGGACGGCACGCTGCGCACGAACGACATCGAGCTGGACAGTTGCGTTCGACGACATGGGCGAGTGGACGTTCCAGAACCGTCGGGCGTTCATGGGGCAGCAGTCGTTCCAGAGGCGTGGTCGAACGTCGGCGTCCAAATCGTCGGTGGTACGAGCAACGAGTGGACAACCNGGTGTCATGCGTTGTCCGAGG]
[+] EMBL BX468757 [AAGAATCCNGCAGCGATNGACAAGGCGAACGTTTCTGCTGGCCGTCGAACGGGACGGCACGCTGCGCACGAACGACATCGAGCTGGACAGTTGCGTTCGACGACATGGGCGAGTGGACGTTCCAGAACCGTCGGGCGTTCATGGGGCAGCAGTCGTTCCAGAGGCGTGGTCGAACGTCGGCGTCCAAATCGTCGGTGGTACGAGCAACGAGTGGACAACCNGGTGTCATGCGTTGTCCGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7077#0 --------CCGGACGCATTAGCTTCAATTGGCTGGATTGTGTTGTGGCCCCGAACCATAT 52
consensus_7077#1 CCGCGCCATCGGACGCATTAGCTTCAATTGGCTAGATTGTGTTGTGGCCCCGAACCATAT 60
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 TCACCGTGTATACTTTGTGTCTCTGTGTGTGTGTCTTTGTGTGTGTGAGTG--------- 103
consensus_7077#1 TCACCGTGTATACTTTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 120
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 -----------------GTGGTTTTGTATTGACGATCGCATGTGAATGACGATGGCAAAA 146
consensus_7077#1 GTCTTTGTGTGTGTGTGGTGGTTTTGTATTGACGATCGCATGTGAATGACGATGGCCAAA 180
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 GCGGTAATCGCTCTATTGTGGATCAATTTGATCTGCCTTATCAGTGTGGTAGTTTGCACC 206
consensus_7077#1 GCGGTAATCGCTCTATTGTGGATCAATTTGATCTGCCTTATCAGTGTGGCAGTTTGCACC 240
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 ACCGACGCCTGGCCCAACAATGGTGGCCGCTCGACCGTGGATCAGGAGCTCGGCGAAAGC 266
consensus_7077#1 CCCGACGCCTGGCCCAAGAATGGTGGCCGCTCGACTGTGGATCAGGAGCTCGGCGAAAGC 300
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 ATGCTCACGAAGCAGCTGTTTGCCATCATCGATCTGTACAAGCAGGATGATCCGGTCGGG 326
consensus_7077#1 ATGCTCACGAAGCAGCTGTTTGCCATCATCGATCTGTACAAGCAGGATGATCCGGTCGGG 360
consensus_7077#2 ----------------AAGAATCCNGCAGCGATNG--ACAAGGCGAACGTTTCTGCTGG- 41
** ** **** ***** * * * * * * **
consensus_7077#0 CTGCCGGACGCGTCCATACCCGACCCGATGCCCATCCCCGAGATCCGGCAGTCGTTCTCG 386
consensus_7077#1 CTGCCGGACGCGTCCATACCCGACCCGATGCCCATCCCCGAGATCCGGCAGTCGTTCTCG 420
consensus_7077#2 CCGTCGAACGGGACGGCACGCTGCGC-ACGAACGACATCGAG-CTGGACAGTTG----CG 95
* * ** *** * * ** * * * * * * * **** * **** * **
consensus_7077#0 TTCGCCAAGATGCATCTGCGCAATGTGCTGGCCCGCGGCATGTCC-CGCTTCCGGATTCG 445
consensus_7077#1 TTCGCCAAGATGCATCTGCGCAATGTGCTTGCCCGCGGCATGTCC-CGCTTCCGGATTCG 479
consensus_7077#2 TTCGACGACATGGGCGAGTGGACGTTCCAGAACCGTCGGGCGTTCATGGGGCAGCAGTCG 155
**** * * *** * * * * * *** * ** * * * * * ***
consensus_7077#0 CTACTTTCACACCGAGCTGAGCCGCATGTCCGTGACGGCGCTGGTAGCGATCGACGAGAT 505
consensus_7077#1 CTACTTCCACACCGAGCTGAGCCGCATGTCCGTGACGGCGCTGGTAGCGATCGACGAGAT 539
consensus_7077#2 TTCCAGAGGCGTGGTCGAACGTCG-GCGTCCAAATCGTCGGTGGTA-CGAGCAACGAGTG 213
* * * * * ** **** ** ** ***** *** * *****
consensus_7077#0 CACGGTCAACGGCAACTACACGATGAGCACGTTCTTCAACCCGGGCCGAGGGCCCGGTTC 565
consensus_7077#1 CACGGTCAACGGTAACTACACGATGAGCACGTTCTTCAACC-GGGC-------------- 584
consensus_7077#2 GACAACCNGGTGT---CATGCGTTGTCCGAGG---------------------------- 242
** * * * ** ** * *
consensus_7077#0 AACGTGGTGATGCGCAACGTGCTGACCAAGGCGAACGTTTTCGCTGGCGGTCGAACGGGA 625
consensus_7077#1 ------------------------------------------------------------
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 CGGCACGCTGCGCACGAACGACATCGAGCTGGACATTGCGTTCGACGAACATGGCGATGG 685
consensus_7077#1 ------------------------------------------------------------
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 ACTTCCAGAACCTCGGCTTCATGGGCAGCATCTTCCAGAGCGTGGTCAACTCGGCGTCCA 745
consensus_7077#1 ------------------------------------------------------------
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 ATCTCGTGTACGACACGATGAAGCCGTTTATGCTGTCCGAGGCGTACACGAAGATCCGGC 805
consensus_7077#1 ------------------------------------------------------------
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 ACGAGGTGGACAGCCGGATGCTGAACATTACGGTCGAGAATCAGTTCACGCTGCCGAACT 865
consensus_7077#1 ------------------------------------------------------------
consensus_7077#2 ------------------------------------------------------------
consensus_7077#0 CGATCGCCCCGCTCGACATGGCGA 889
consensus_7077#1 ------------------------
consensus_7077#2 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||