These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1155 fasta sequence [CCGCCCACGCGTCCGCAAGTGGGACTACTGGTGCGAGGCCTTTATCCACGCGGAAAGTGGTCAAACACTTCAGGTCGTGATCAACGATGAGGACGCCGGCGAAGATGAACTGTTGGGAAGAGCAACGGTGGAAATCAGCAGCGTTACCAAGAACGGCGAAATCGATACTTGGCTGACTCTGGAACAGGCAAAGCATGGGTTGGTGCATCTACGCATGACTTGGTTCAAACTGAGCTCCGAAAAGTCTGACCTGAAGCAAGCGCTGGAAGAAACGCAACATCTGCGTGTGACCTCTATGAGCACCGCACTGCTGACCGTTTTCATCGATTCGGCCAAGAACCTGCCGCAAGCACGCCAACAGTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGTACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCCGGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCACACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACCGTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCATCCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAACGCAGCGGAAGCGGCCGCCCTGTCCCATCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCAACCACCTCCGCCATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGTCATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGACGGCGGCACGGAGCTGTTGCGTCGCAGCCCCAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGACGGTGGCGTACAGTGTGCAGCGCCAGCGGCTGCTAGTGATCGTGCACAAGATCAACAATATTCCGCTGAAAGATCC] [+] EMBL BM645874 [CCGCCCACGCGTCCGCAAGTGGGACTACTGGTGCGAGGCCTTTATCCACGCGGAAAGTGGTCAAACACTTCAGGTCGTGATCAACGATGAGGACGCCGGCGAAGATGAACTGTTGGGAAGAGCAACGGTGGAAATCAGCAGCGTTACCAAGAACGGCGAAATCGATACTTGGCTGACTCTGGAACAGGCAAAGCATGGGTTGGTGCATCTACGCATGACTTGGTTCAAACTGAGCTCCGAAAAGTCTGACCTGAAGCAAGCGCTGGAAGAAACGCAACATCTGCGTGTGACCTCTATGAGCACCGCACTGCTGACCGTTTTCATCGATTCGGCCAAGAACCTGCCGCAAGCACGCCAACAGTCACAGCCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGTACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACCTTCCTGGTGGGCAACCCGGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCACACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACCGTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCATCCTGA ] [+] EMBL BX602105 [ CCAACAGTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGTACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCCGGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCACACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACCGTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCATCCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAACGCAGCGGAAGCGGCCGCCCTGTCCCATCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCAACCACCTCCGCCATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGTCATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGACGGCGGCACGGAGCTGTTGCGTCGCAGCCCCAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGACGGTGGCGTACAGTGTGCAGCG ] [-] EMBL AGA280609 [ ACAGTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGTACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCCGGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAGCACAATCGGCACACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACCGTTCCAGCTGCAAAAGTCTGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCATCCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAAC ] [+] EMBL AGA283446 [ TCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCGACCACCTCCGCCATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGTCATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGAAGGCGGCACGGAGCTGTTGCGTCGCAGCCCAAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGACGGTGGCGTACAGTGTGCAGCGCCAGCGGCTGCTAGTGATCGTGCACAAGATCAACAATATTCCGCTGAAAGATCC] consensusID : consensus_7078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 184 fasta sequence [CGAGTGAAGAAGGAGCAAGAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAAC] [-] EMBL AGA283829 [CGAGTGAAGAAGGAGCAAGAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAAC] [+] EMBL AGA285121 [ AAGGAGCAAGAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAATCGTCGACCGGGGACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7078#0 CCGCCCACGCGTCCGCAAGTGGGACTACTGGTGCGAGGCCTTTATCCACGCGGAAAGTGG 60 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 TCAAACACTTCAGGTCGTGATCAACGATGAGGACGCCGGCGAAGATGAACTGTTGGGAAG 120 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 AGCAACGGTGGAAATCAGCAGCGTTACCAAGAACGGCGAAATCGATACTTGGCTGACTCT 180 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 GGAACAGGCAAAGCATGGGTTGGTGCATCTACGCATGACTTGGTTCAAACTGAGCTCCGA 240 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 AAAGTCTGACCTGAAGCAAGCGCTGGAAGAAACGCAACATCTGCGTGTGACCTCTATGAG 300 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 CACCGCACTGCTGACCGTTTTCATCGATTCGGCCAAGAACCTGCCGCAAGCACGCCAACA 360 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 GTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGT 420 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 ACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCC 480 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 GGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCAC 540 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 ACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACC 600 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 GTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCAT 660 consensus_7078#1 ------------------------------------------CGAGTGAAGAAGGAGCAA 18 * * *** consensus_7078#0 CCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTC 720 consensus_7078#1 GAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTC 78 ** * * ***** *************************************** consensus_7078#0 CGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTC 780 consensus_7078#1 CGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTC 138 ************************************************************ consensus_7078#0 GCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAACGCAGCGGAAGCGGC 840 consensus_7078#1 GCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAAC-------------- 184 ********************************************** consensus_7078#0 CGCCCTGTCCCATCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCAACCACCTCCGC 900 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 CATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGT 960 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 CATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGACGGCGGCACGGAGCTGTTGCG 1020 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 TCGCAGCCCCAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGAC 1080 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 GGTGGCGTACAGTGTGCAGCGCCAGCGGCTGCTAGTGATCGTGCACAAGATCAACAATAT 1140 consensus_7078#1 ------------------------------------------------------------ consensus_7078#0 TCCGCTGAAAGATCC 1155 consensus_7078#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||