cluster # 7078

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Anopheles gambiae
cluster # 7078 cluster # 7078 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7078#0 length = 1155 sequences # 4

consensus_7078#1 length = 184 sequences # 2

consensusID : consensus_7078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1155
fasta sequence

                              [CCGCCCACGCGTCCGCAAGTGGGACTACTGGTGCGAGGCCTTTATCCACGCGGAAAGTGGTCAAACACTTCAGGTCGTGATCAACGATGAGGACGCCGGCGAAGATGAACTGTTGGGAAGAGCAACGGTGGAAATCAGCAGCGTTACCAAGAACGGCGAAATCGATACTTGGCTGACTCTGGAACAGGCAAAGCATGGGTTGGTGCATCTACGCATGACTTGGTTCAAACTGAGCTCCGAAAAGTCTGACCTGAAGCAAGCGCTGGAAGAAACGCAACATCTGCGTGTGACCTCTATGAGCACCGCACTGCTGACCGTTTTCATCGATTCGGCCAAGAACCTGCCGCAAGCACGCCAACAGTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGTACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCCGGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCACACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACCGTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCATCCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAACGCAGCGGAAGCGGCCGCCCTGTCCCATCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCAACCACCTCCGCCATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGTCATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGACGGCGGCACGGAGCTGTTGCGTCGCAGCCCCAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGACGGTGGCGTACAGTGTGCAGCGCCAGCGGCTGCTAGTGATCGTGCACAAGATCAACAATATTCCGCTGAAAGATCC]

[+] EMBL BM645874             [CCGCCCACGCGTCCGCAAGTGGGACTACTGGTGCGAGGCCTTTATCCACGCGGAAAGTGGTCAAACACTTCAGGTCGTGATCAACGATGAGGACGCCGGCGAAGATGAACTGTTGGGAAGAGCAACGGTGGAAATCAGCAGCGTTACCAAGAACGGCGAAATCGATACTTGGCTGACTCTGGAACAGGCAAAGCATGGGTTGGTGCATCTACGCATGACTTGGTTCAAACTGAGCTCCGAAAAGTCTGACCTGAAGCAAGCGCTGGAAGAAACGCAACATCTGCGTGTGACCTCTATGAGCACCGCACTGCTGACCGTTTTCATCGATTCGGCCAAGAACCTGCCGCAAGCACGCCAACAGTCACAGCCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGTACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACCTTCCTGGTGGGCAACCCGGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCACACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACCGTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCATCCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX602105             [                                                                                                                                                                                                                                                                                                                                                                  CCAACAGTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGTACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCCGGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCACACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACCGTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCATCCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAACGCAGCGGAAGCGGCCGCCCTGTCCCATCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCAACCACCTCCGCCATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGTCATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGACGGCGGCACGGAGCTGTTGCGTCGCAGCCCCAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGACGGTGGCGTACAGTGTGCAGCG                                                      ]
[-] EMBL AGA280609            [                                                                                                                                                                                                                                                                                                                                                                     ACAGTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGTACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCCGGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAGCACAATCGGCACACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACCGTTCCAGCTGCAAAAGTCTGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCATCCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAAC                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AGA283446            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCGACCACCTCCGCCATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGTCATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGAAGGCGGCACGGAGCTGTTGCGTCGCAGCCCAAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGACGGTGGCGTACAGTGTGCAGCGCCAGCGGCTGCTAGTGATCGTGCACAAGATCAACAATATTCCGCTGAAAGATCC]




>consensus_7078#0
CCGCCCACGCGTCCGCAAGTGGGACTACTGGTGCGAGGCCTTTATCCACGCGGAAAGTGG
TCAAACACTTCAGGTCGTGATCAACGATGAGGACGCCGGCGAAGATGAACTGTTGGGAAG
AGCAACGGTGGAAATCAGCAGCGTTACCAAGAACGGCGAAATCGATACTTGGCTGACTCT
GGAACAGGCAAAGCATGGGTTGGTGCATCTACGCATGACTTGGTTCAAACTGAGCTCCGA
AAAGTCTGACCTGAAGCAAGCGCTGGAAGAAACGCAACATCTGCGTGTGACCTCTATGAG
CACCGCACTGCTGACCGTTTTCATCGATTCGGCCAAGAACCTGCCGCAAGCACGCCAACA
GTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGT
ACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCC
GGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCAC
ACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACC
GTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCAT
CCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTC
CGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTC
GCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAACGCAGCGGAAGCGGC
CGCCCTGTCCCATCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCAACCACCTCCGC
CATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGT
CATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGACGGCGGCACGGAGCTGTTGCG
TCGCAGCCCCAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGAC
GGTGGCGTACAGTGTGCAGCGCCAGCGGCTGCTAGTGATCGTGCACAAGATCAACAATAT
TCCGCTGAAAGATCC

consensusID : consensus_7078#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 184
fasta sequence

                              [CGAGTGAAGAAGGAGCAAGAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAAC]

[-] EMBL AGA283829            [CGAGTGAAGAAGGAGCAAGAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAAC]
[+] EMBL AGA285121            [         AAGGAGCAAGAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAATCGTCGACCGGGGACT     ]




>consensus_7078#1
CGAGTGAAGAAGGAGCAAGAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCC
GGACAAGGGACCGGCGTCCGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCAC
CTCGGCGTCCCACGGTTCGCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTC
GAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7078#0      CCGCCCACGCGTCCGCAAGTGGGACTACTGGTGCGAGGCCTTTATCCACGCGGAAAGTGG 60
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      TCAAACACTTCAGGTCGTGATCAACGATGAGGACGCCGGCGAAGATGAACTGTTGGGAAG 120
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      AGCAACGGTGGAAATCAGCAGCGTTACCAAGAACGGCGAAATCGATACTTGGCTGACTCT 180
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      GGAACAGGCAAAGCATGGGTTGGTGCATCTACGCATGACTTGGTTCAAACTGAGCTCCGA 240
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      AAAGTCTGACCTGAAGCAAGCGCTGGAAGAAACGCAACATCTGCGTGTGACCTCTATGAG 300
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      CACCGCACTGCTGACCGTTTTCATCGATTCGGCCAAGAACCTGCCGCAAGCACGCCAACA 360
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      GTCACAACCGGACCCGTACCTGGTGCTTTCGGTGGGCAAAAAGAACGAGCAAACCTCGGT 420
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      ACAGATGCGCACGGATGCGCCGGTCTGGGAGCAGGGCTTTACTTTCCTGGTGGGCAACCC 480
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      GGACAACGACACGCTGCAGCTGAAGGTGATCGACCAGAAGACGGGCAACACCATCGGCAC 540
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      ACTGACGTACATCCTGAGCGCACTGATGGAGAAGAAAAATCTCGAGATCATGTCACAACC 600
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      GTTCCAGCTGCAAAAGTCCGGCCCAGAGACGAAGATCATTATGTCGCTGTCGCTGCGCAT 660
consensus_7078#1      ------------------------------------------CGAGTGAAGAAGGAGCAA 18
                                                                   *        * *** 

consensus_7078#0      CCTGAAGCGCCACCGGGAGCAGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTC 720
consensus_7078#1      GAGCGAGAGAGAGAGGGAGAGGGAGCCAGCGGTCACCACGCCGGACAAGGGACCGGCGTC 78
                           ** *  *  *****  ***************************************

consensus_7078#0      CGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTC 780
consensus_7078#1      CGAGGCGGACAGTGTGCTGTCACGCACCAGCTCCATCCGCACCTCGGCGTCCCACGGTTC 138
                      ************************************************************

consensus_7078#0      GCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAACGCAGCGGAAGCGGC 840
consensus_7078#1      GCAGTCCGGTACGCTGCAGCAGCAACCGTCGACCGGGGACTCGAAC-------------- 184
                      **********************************************              

consensus_7078#0      CGCCCTGTCCCATCAGGGTAGCGTCCGGAAGCAGGACTCGCGCAAGTCAACCACCTCCGC 900
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      CATCATGGAGCAGATGTCGATCCAGGAGGAACCGTTCGTCGTGTCGACGCTGAACACGGT 960
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      CATGATGGCAACGCCACCGCGCAGCCCGAATCTGAGCGACGGCGGCACGGAGCTGTTGCG 1020
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      TCGCAGCCCCAGCACCACGTCCTCCTCCGGCTCGGCTGGCCTCGGACGCATCCAGCTGAC 1080
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      GGTGGCGTACAGTGTGCAGCGCCAGCGGCTGCTAGTGATCGTGCACAAGATCAACAATAT 1140
consensus_7078#1      ------------------------------------------------------------
                                                                                  

consensus_7078#0      TCCGCTGAAAGATCC 1155
consensus_7078#1      ---------------