These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1073 fasta sequence [CCGGCCACTGGGAGCCACGCCGGAGTATCTTGCCGGCCACTATATGCTGCAAGGCGGCTCCAGTATGCTGCCCGTAATGGCCCTGGCGCCGGAGGAAAACGAACGCATTCTCGATATGTGCGCTGCGCCGGGCGGCAAGAGCTCCCACATTGCCGCGCTGATGAAGAACACGGGCGTGCTGTTTGTCAACGATGCAAACAAGGAGCGGCTGCACGCGGTGTTGGGCAACTTCCATCGGCTCGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACCGCAACATCATGAAGGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGACCCGAGCGTGAAGGCCACGAAGAACGA-GATCGATGTGCAGCGGTGTTACAACTTGCAGCGGCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTGATTGATTTCGCACTGAAACGGCGCAACGTGCGCCTGGTGCCGACGGGGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCGCTTCTATCCCCACACCCACAATCTGGACGGGTTCTTCGTGGCCAAGCTGCAGAAATTCTCCGACGCCATACCGAAGTGCGTGGACGGTGAGCCGGAGGGGAAGGATGAGGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCGACAAGCGCGACTGGTACTACCAGGACATTATCGACGAGCGCAAGGCACAGCGGGAGGACAAAAACAAGAACCACGTCGTGACGGTGTTCCAGAAGCCAGCGAACGTTAAGAAGGGACCGAAAAAGCCCAAACAACCACAGCCGAGTGCTGGGGAAAGGGAGC-AAAGCCACAAAAGCCGGCAAGCGAGGAGCCGAAGCAGCCAGTAACGAACGGCAGCAGCAGCAAGCAGCGTCAACCGGCACCGAGAAGCAAGACCGAACAACGGGAAGC] [+] EMBL BM636591 [CCGGCCACTGGGAGCCACGCCGGAGTATCTTGCCGGCCACTATATGCTGCAAGGCGGCTCCAGTATGCTGCCCGTAATGGCCCTGGCGCCGGAGGAAAACGAACGCATTCTCGATATGTGCGCTGCGCCGGGCGGCAAGAGCTCCCACATTGCCGCGCTGATGAAGAACACGGGCGTGCTGTTTGTCAACGATGCAAACAAGGAGCGGCTGCACGCGGTGTTGGGCAACTTCCATCGGCTCGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACCGCAACATCATGAAGGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGACCCGAGCGTGAAGGCCACGAAGAACGA GATCGATGTGCAGCGGTGTTACAACTTGCAGCGGCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTGATTGATTTCGCACTG ] [+] EMBL CNS08QZM [ cccATATGTGCGCTGCGCCGGGCGGCAAGAGCTCCCACATTGCCGCGCTGATGAAGAACACGGGCGTGCTGTTTGTCAACGATGCAAACAAGGAGCGGCTGCACGCGGTGTTGGGCAACTTCCATCGGCTCGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACCGCAACATCATGAAGGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGACCCGAGCGTGAAGGCCACGAAGAACGA GATCGATGTGCAGCGGTGTTACAACTTGCAGCGGCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGG GGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCA GAAAACGAATGGGTGATTGATTTCGCACTGAAACGGCGCAACGTGCGACTGGTGCCGACGGGGCTCGACTTTTTTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCGGGCGACGATGAAGCTAACGCGTCGCTTCTATCCCCACACCCACAATCTGGACGGGTTCTTCGTGGCCAAGCTGCAGAAATTCTCCGACGCCATACCGAAGTGCGTGGACGGTGAGCCGGAGGGGAAGGATGAGGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCGACAAGCGCGACTGGTACTACCAGGACATTATCGACGAGCGCAAGGCACAGCGGGAGGACAAAAACAAGAACCACGTCGTGACGGTGTTCCAGAAGCCAGCGAACGTTAAGAAGGGACCGAAAAAGCCCAAACAACCACAGCCGAGTGCTGGGGAAAGGGAGC AAAGCCACAAAAGCCGGCAAGCGAGGAGCCGAAGCAGCCAGTAACGAACGGCAGCAGCAGCAAGCAGCGTCAACCGGCACCGAGAAGCAAGACCGAACAACGGGAAGC] [+] EMBL AGA280553 [ GGGCAACTTCCATCGGCTCGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACGGCAACATCATGAAGGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGACCCGAGCGTGAAGGCCACGAAGAACGA GATCGATGTGCAACGGTGCTTTAACTTGCAGCGGCGTCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTAATTGATTTTGCGCTGAAACGGCGCAACGTGCGCCTGGTGCC ] [+] EMBL AL934769 [ CGAGGAT TATGT CA CGGTGCTTTAACTTGCAGCGGCGTCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTAATTGATTTTGCGCTGAAACGGCGCAACGTGCGCCTGGTGCCGACGGGGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCGCTT ] [+] EMBL BM648116 [ ccgGGCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGTGGCTATCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTGATTGATTTCGCACTGAAACGGCGCAACGTGCGCCTGGTGCCGACGGGGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCGCTTCTATCCCCACACCCACAATCTGGACGGGTTTTTCGTGGCGAAGCTGCAGAAATTCT CGACGCCATACCGAAGAGCGTGGACGGTGAGCCGGAGGCGGAGGATGAGGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCGACAAGCGCGACTGGTACTACCAGGACATTATCGACGAGCGCAAGGCACAGCGGGAGGACAAAAACAAGAACCACGTCGTGACGGTGTTCCAGAAGCCAGCGAACGTTAAGAAGGGACCGAAAAAGCCCAAACAACCACAGCCGAGTGCTGGGGAAAGGGAGCAAAAGCCACAAAAGCCGGCAAGCGAGGAGCCGAAGCAGCCAGCAACGAACGGCACCAGCAGC AGCAGCaa ] consensusID : consensus_7088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [GATCGCCCGAGGNTAAGACGAGATCGATGTGCACGGTGCTTTAACTTGCAGCGGCGTCTGTGCTGACGCGATCGATTGCTGTNGGCAGCTCGCCGACGGTGGGTACTGGTGTACTCCACCTGGTCCATCCTGCGCAGGAAAACGAATGGGTAATTGATTTTTGCGCTGAAACGGGCAACGTGCGCCTGGTGCCGACGGNGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCTGCTTCTATTCCCAAAACCACAATCTGGACGGGTTCTTCGTGGCGAAGCTGCAGAAATTCTCCGACGCCATACCGAAGAGCGTGTGACGGTGAGCCGGAGTGCGGAGGATGATGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCTGACAAGCTGCTG] [+] EMBL AL931084 [GATCGCCCGAGGNTAAGACGAGATCGATGTGCACGGTGCTTTAACTTGCAGCGGCGTCTGTGCTGACGCGATCGATTGCTGTNGGCAGCTCGCCGACGGTGGGTACTGGTGTACTCCACCTGGTCCATCCTGCGCAGGAAAACGAATGGGTAATTGATTTTTGCGCTGAAACGGGCAACGTGCGCCTGGTGCCGACGGNGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCTGCTTCTATTCCCAAAACCACAATCTGGACGGGTTCTTCGTGGCGAAGCTGCAGAAATTCTCCGACGCCATACCGAAGAGCGTGTGACGGTGAGCCGGAGTGCGGAGGATGATGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCTGACAAGCTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7088#0 CCGGCCACTGGGAGCCACGCCGGAGTATCTTGCCGGCCACTATATGCTGCAAGGCGGCTC 60 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 CAGTATGCTGCCCGTAATGGCCCTGGCGCCGGAGGAAAACGAACGCATTCTCGATATGTG 120 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 CGCTGCGCCGGGCGGCAAGAGCTCCCACATTGCCGCGCTGATGAAGAACACGGGCGTGCT 180 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 GTTTGTCAACGATGCAAACAAGGAGCGGCTGCACGCGGTGTTGGGCAACTTCCATCGGCT 240 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 CGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACCGCAACATCATGAA 300 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 GGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGA 360 consensus_7088#1 ----------------------------------------------------------GA 2 ** consensus_7088#0 CCCGAGCGTGAAGGCCACGAAGAACGAGATCGATGTGCAGCGGTGTTACAACTTGCAGCG 420 consensus_7088#1 TC---GCCCGAGGNT-----AAGACGAGATCGATGTGCA-CGGTGCTTTAACTTGCAGCG 53 * ** ** * * **************** ***** * *********** consensus_7088#0 GCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCT 480 consensus_7088#1 GCGTCTG-TGCTGAC-GCGATCGATTGC-TGTNGGC-AGCTCGCCGAC-GGTGGGTAC-T 107 *** *** ******* ************ *** *** *********** ** ** *** * consensus_7088#0 GGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTGATTGATTTC-GCAC 539 consensus_7088#1 GGTGTACTCCACCTGGTCCATCCTGC-GCAGGAAAACGAATGGGTAATTGATTTTTGCGC 166 *************** ********** ****************** ******** ** * consensus_7088#0 TGAAACGGCGCAACGTGCGCCTGGTGCCGACGGGGCTCGACTTCGGTGTCGAGGGCATGA 599 consensus_7088#1 TGAAACGG-GCAACGTGCGCCTGGTGCCGACGGNGCTCGACTTCGGTGTCGAGGGCATGA 225 ******** ************************ ************************** consensus_7088#0 CCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTC-GCTTCTATCCC 658 consensus_7088#1 CCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCTGCTTCTATTCC 285 ************************************************ ******** ** consensus_7088#0 CACACCCACAATCTGGACGGGTTCTTCGTGGCCAAGCTGCAGAAATTCTCCGACGCCATA 718 consensus_7088#1 CAAAACCACAATCTGGACGGGTTCTTCGTGGCGAAGCTGCAGAAATTCTCCGACGCCATA 345 ** * *************************** *************************** consensus_7088#0 CCGAAGTGCGTG-GACGGTGAGCCGGAGGG-GAAGGATGAGGTGGAGGAAGAGCCGGAGG 776 consensus_7088#1 CCGAAGAGCGTGTGACGGTGAGCCGGAGTGCGGAGGATGATGTGGAGGAAGAGCCGGAGG 405 ****** ***** *************** * * ******* ******************* consensus_7088#0 AGGAAATGAAGCTGCCGAAGAAGATC-GACAAGCGCGACTGGTACTACCAGGACATTATC 835 consensus_7088#1 AGGAAATGAAGCTGCCGAAGAAGATCTGACAAGCT--GCTG------------------- 444 ************************** ******* *** consensus_7088#0 GACGAGCGCAAGGCACAGCGGGAGGACAAAAACAAGAACCACGTCGTGACGGTGTTCCAG 895 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 AAGCCAGCGAACGTTAAGAAGGGACCGAAAAAGCCCAAACAACCACAGCCGAGTGCTGGG 955 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 GAAAGGGAGCAAAGCCACAAAAGCCGGCAAGCGAGGAGCCGAAGCAGCCAGTAACGAACG 1015 consensus_7088#1 ------------------------------------------------------------ consensus_7088#0 GCAGCAGCAGCAAGCAGCGTCAACCGGCACCGAGAAGCAAGACCGAACAACGGGAAGC 1073 consensus_7088#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||