These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 983 fasta sequence [CGACCCACGCGTCCGGAACAGGAAGCGGAACGTACGGCCAACGGTAGCGCGACCGGTTACTGCAACGATAAGGACAAAGTACCGGCCCTGGTACACTATCCGGACAATCTGCATCCGGTCGATCTGTTCTACTTCCTGCTGGCGCCGACCCTCTGCTACGAGCTGAACTTCCCCAAGACGAACCGCATCCGGAAGCGGTTCCTGATCAAACGCATGCTGGAGGTGGTGATCGGGGTGCACATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTT-TTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCGGGATGATGGCACAGATCCCGCTCTCGTTCGTTGCCAAGTACATGGAGACGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGTGTAAGAGGGGATACACTTTTTGACTACACCATTGTGCCAAAAAGAGAGAGGAAGAGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCACGTAATCTACATTCACACACACACAGACTGCTGTCCATCATCGTTCCA] [+] EMBL BM631452 [CGACCCACGCGTCCGGAACAGGAAGCGGAACGTACGGCCAACGGTAGCGCGACCGGTTACTGCAACGATAAGGACAAAGTACCGGCCCTGGTACACTATCCGGACAATCTGCATCCGGTCGATCTGTTCTACTTCCTGCTGGCGCCGACCCTCTGCTACGAGCTGAACTTCCCCAAGACGAACCGCATCCGGAAGCGGTTCCTGATCAAACGCATGCTGGAGGTGGTGATCGGGGTGCACATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACTTGACGTTCCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGA ] [+] EMBL BX602817 [ GGGGTGCACATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGAT GGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTCTTCTTCAGC ] [+] EMBL BX613686 [ ATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTT TTCTTCAGCGCCTTCT ] [+] EMBL BX612663 [ CGTTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAACCATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTT TTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCGGGATGATGGCACAGATCCCGCTCTCGTTCGTTGCCAAGTACATGGAGACGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGTGTAAGAGGGGATACACTTTTTGACTACACCATTGTGCCAAAAAGAGAGAGGAAGAGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCACGTAATCTACATTCACACACACACAGACTGCTGTCCATCATCGTTCCA] consensusID : consensus_7098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence [AGAATCCCCGAGGTTTGGCTGTGCTTCTTCTACCTGACGTTCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCTGGGATGATGGCACAGATCCCGCTCTCGTTCGTTTGCCAAGTACATGGAGACTGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCTGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAATACAACGATGTGCTGGTTGTAACGAGGGGATACACTTTTTTGACTACACCATTGTGCCAAAACAGAGAGCAGGNCAGAGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACANATCACGTAATCTACATTCACACACACACAGACTGCTTGTCCATCAGTCGTTCCACGGTCCGTCTGCCGAAGATCGCCAAGTTTGTACATCTTTTCGATAAATGCCGGTATTTTTGGTAGCACGGGNTAAAANAGACACAATAGAAGANAGAAAAAAAACAGGTGCGNTTTGTTAGCCTGGGCCCGACAAAGCGCGTTATAACCCCTTTTAGGTAGACGNGGGTTAGAATCTTATACAGCCTATGGGCAANATCGGNACCGCTCGCGTATTAACAACCNGNTTCCTTGAACCTTGGGCAAAAA] [+] EMBL AL931985 [AGAATCCCCGAGGTTTGGCTGTGCTTCTTCTACCTGACGTTCACTCGTTCCTAAATCTGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCTGGGATGATGGCACAGATCCCGCTCTCGTTCGTTTGCCAAGTACATGGAGACTGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCTGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAATACAACGATGTGCTGGTTGTAACGAGGGGATACACTTTTTTGACTACACCATTGTGCCAAAACAGAGAGCAGGNCAGAGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACANATCACGTAATCTACATTCACACACACACAGACTGCTTGTCCATCAGTCGTTCCACGGTCCGTCTGCCGAAGATCGCCAAGTTTGTACATCTTTTCGATAAATGCCGGTATTTTTGGTAGCACGGGNTAAAANAGACACAATAGAAGANAGAAAAAAAACAGGTGCGNTTTGTTAGCCTGGGCCCGACAAAGCGCGTTATAACCCCTTTTAGGTAGACGNGGGTTAGAATCTTATACAGCCTATGGGCAANATCGGNACCGCTCGCGTATTAACAACCNGNTTCCTTGAACCTTGGGCAAAAA] consensusID : consensus_7098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GCAGAATCGGCACGAGGGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCGGGATGATGGCACAGATCCCGCTCTCGTTCGTTGCCAAGTACATGGAGACGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGTGTAAGAGGGGATACACTTTTTGACTACACCATTGTGCCAAAAAAGAGAGAGGAAGANAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCANCGTAATTCTACATT] [+] EMBL BX469875 [GCAGAATCGGCACGAGGGATGGGCGAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATCGACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTACATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTCAGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCATTCACCGGGATGATGGCACAGATCCCGCTCTCGTTCGTTGCCAAGTACATGGAGACGAACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCGTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGTGTAAGAGGGGATACACTTTTTGACTACACCATTGTGCCAAAAAAGAGAGAGGAAGANAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCANCGTAATTCTACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7098#0 CGACCCACGCGTCCGGAACAGGAAGCGGAACGTACGGCCAACGGTAGCGCGACCGGTTAC 60 consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 ------------------------------------------------------------ consensus_7098#0 TGCAACGATAAGGACAAAGTACCGGCCCTGGTACACTATCCGGACAATCTGCATCCGGTC 120 consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 ------------------------------------------------------------ consensus_7098#0 GATCTGTTCTACTTCCTGCTGGCGCCGACCCTCTGCTACGAGCTGAACTTCCCCAAGACG 180 consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 ------------------------------------------------------------ consensus_7098#0 AACCGCATCCGGAAGCGGTTCCTGATCAAACGCATGCTGGAGGTGGTGATCGGGGTGCAC 240 consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 ------------------------------------------------------------ consensus_7098#0 ATCGTGATGGGTCTGTTCCAGCAGTGGATGATCCCGTCGGTGCGCAACTCGCTGGTGCCG 300 consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 ------------------------------------------------------------ consensus_7098#0 TTTTCCAACATGGATCTTACAAAGACGGCCGAACGTTTGCTAAAGCTTGCGATTCCAAAC 360 consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 ------------------------------------------------------AGAATC 6 consensus_7098#0 CATCTGATGTGGCTGTGCTTCTTCTACCTGACGTTCCACTCGTTCCTAAATCTGATGGGC 420 consensus_7098#2 ---------------------------------GCAGAATCGGCACGAGG---GATGGGC 24 consensus_7098#1 CCCGAGGTTTGGCTGTGCTTCTTCTACCTGACGTTC-ACTCGTTCCTAAATCTGATGGGC 65 * *** * * ******* consensus_7098#0 GAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATC 480 consensus_7098#2 GAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATC 84 consensus_7098#1 GAGCTGCTACACTTTGCCGACCGGAACTTTTACAGCGACTGGTGGAACGCGAACAACATC 125 ************************************************************ consensus_7098#0 GACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTAC 540 consensus_7098#2 GACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTAC 144 consensus_7098#1 GACACGTTCTGGCGCACGTGGAACATGCCCGTGCACAAGTGGTGCGTTCGCCATCTGTAC 185 ************************************************************ consensus_7098#0 ATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTC 600 consensus_7098#2 ATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTC 204 consensus_7098#1 ATCCCAGTGGTGGAGCTCGGCTACTCCAAGGTGGCCGCCTCGGTGATCGTGTTTTTCTTC 245 ************************************************************ consensus_7098#0 AGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCA 660 consensus_7098#2 AGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCA 264 consensus_7098#1 AGCGCCTTCTTCCACGAGTATCTCGTCAGTGTGCCGCTGAAAACGTTCAAGGTGTGGGCA 305 ************************************************************ consensus_7098#0 TTCACC-GGGATGATGGCACAGATCCCGCTCTCGTTCGTT-GCCAAGTACATGGAGAC-G 717 consensus_7098#2 TTCACC-GGGATGATGGCACAGATCCCGCTCTCGTTCGTT-GCCAAGTACATGGAGAC-G 321 consensus_7098#1 TTCACCTGGGATGATGGCACAGATCCCGCTCTCGTTCGTTTGCCAAGTACATGGAGACTG 365 ****** ********************************* ***************** * consensus_7098#0 AACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACC- 776 consensus_7098#2 AACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACC- 380 consensus_7098#1 AACTACGGACCCCGGTGGGGCAATATGCTCGTGTGGGCTTCGATTATTCTGGGCCAACCT 425 *********************************************************** consensus_7098#0 GTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGT 836 consensus_7098#2 GTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAACTACAACGATGTGCTGGT 440 consensus_7098#1 GTTGGCCATCATGATGTACTATCACGACTTTGTCATCACCAA-TACAACGATGTGCTGGT 484 ****************************************** ***************** consensus_7098#0 -GTAA-GAGGGGATACACTTTTT-GACTACACCATTGTGCCAAAAA-GAGAG--AGGAAG 890 consensus_7098#2 -GTAA-GAGGGGATACACTTTTT-GACTACACCATTGTGCCAAAAAAGAGAG--AGGAAG 495 consensus_7098#1 TGTAACGAGGGGATACACTTTTTTGACTACACCATTGTGCCAAAACAGAGAGCAGGNCAG 544 **** ***************** ********************* ***** * ** consensus_7098#0 AGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCAC-GTAAT-CTACATT 948 consensus_7098#2 ANAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACACATCANCGTAATTCTACATT 555 consensus_7098#1 AGAGAGAGATAGGGAGAATGTGGACATTCCACAGTACACANATCAC-GTAAT-CTACATT 602 * ************************************** **** ***** ******* consensus_7098#0 CACACACACACAGACTGCT-GTCCATCA-TCGTTCCA----------------------- 983 consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 CACACACACACAGACTGCTTGTCCATCAGTCGTTCCACGGTCCGTCTGCCGAAGATCGCC 662 consensus_7098#0 ------------------------------------------------------------ consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 AAGTTTGTACATCTTTTCGATAAATGCCGGTATTTTTGGTAGCACGGGNTAAAANAGACA 722 consensus_7098#0 ------------------------------------------------------------ consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 CAATAGAAGANAGAAAAAAAACAGGTGCGNTTTGTTAGCCTGGGCCCGACAAAGCGCGTT 782 consensus_7098#0 ------------------------------------------------------------ consensus_7098#2 ------------------------------------------------------------ consensus_7098#1 ATAACCCCTTTTAGGTAGACGNGGGTTAGAATCTTATACAGCCTATGGGCAANATCGGNA 842 consensus_7098#0 --------------------------------------------- consensus_7098#2 --------------------------------------------- consensus_7098#1 CCGCTCGCGTATTAACAACCNGNTTCCTTGAACCTTGGGCAAAAA 887 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||