These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 831 fasta sequence [ATAAAAGCATATTTTATTTCTTTTGGGGATTTTTGAAATATTTTTGCACGATTTTTTTTACGTTAAAATACTACCAACATTCTCAATGGGTTTGTTCAATGGTTTATCTGATTATCACATATCTTTCCTCCAAAAAGCACGGCTCCCCTTCACGTCATCAACAGTGCTGTGATGTGATTTTCTAGCACAGCCTGCGCCAGATTAGCGTTGTTTTTCACCGCCAGC-GA-GTA-GGCGGACTCGCCGTCCTCGTTCGTCTCGGTAAAGCTAGCCCCGGAATTTAGCAGCTCGTTACAGGTGTGGGGATGGTTGCCGGCAGCCGCCATACATGAGCGCAGTATTGCCTACGATGTCCATGTGATTGACCACTGCTCCGTTTTCCACCAGCAATCGGACGATCTCATTGTGTCCACCTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATAAGAATACTGGCGCGCCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAACTGATCGGCATCTGGAACGTCGACCGCCTGTTCCGCCCGTATCTGTTCCTCGGTTATTTCCCCTTGTCCGGTTTTTTCGTGAAAGTTGAGACAGATTTCACTGGGAATGTTTGCTTCCGTGTTGCCGCGCTGCAAGTTTGTTAGCACCGTGTTCGAAGGTTTGTACGGCAGGAAGGCACTTTTCCTTTTGCCGCTCGCCAGCAGCAATGGATTGAAATCCATCTTTCTATCATCCTCGGAATTTGGAGACGAGCTCATGGTGAACGAATTCGGTGTTTGTGTGGTGATTATT] [+] EMBL BX611607 [ATAAAAGCATATTTTATTTCTTTTGGGGATTTTTGAAATATTTTTGCACGATTTTTTTTACGTTAAAATACTACCAACATTCTCAATGGGTTTGTTCAATGGTTTATCTGATTATCACATATCTTTCCTCCAAAAAGCACGGCTCCCCTTCACGTCATCAACAGTGCTGTGATGTGATTTTCTAGCACAGCCTGCGCCAGATTAGCGTTGTTTTTCACCGCCAGC GA GTA GGCAGACTCGCCGTCCTCGTTCGTCTCGGTAAAGCT ] [+] EMBL CNS09D8N [ ATTTCGTTTGGGGATTTTTGAAATATTTTTGCACGATTTTTTTAACGTTAAAATACTACCAACATTCTCAATGGGTTTGTTCAATGGTTTATCTGATTATCACATATCTTTCCTCCAAAAAGCACGGCTTCCCTTCACGTCATCAGCAGTGCTGTGATGTGATTTTCTAGCACAGCCTGTGCCAGATTAGCGTTGTTTTTCACCGCCAGC GA GTA GGCGGACTCGCCGTCCTCGTTCGTCTCGGTAAAGCTAGCCCCGGAATTTAGCAGCTCGTTACAGGTGTGGGGATGGTTGCCGGCAGCCGCCATACATGAGCGCAGTATTGCCTACGATGTCCATGTGATTGACCACTGCTCCGTTTTCCACCAGCAATCGGACGATCTCATTGTGTCCACCTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATAAGAATACTGGCGCGCCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAACTGATCGGCATCTGGAACGTCGACCGCCTGTTCCGCCCGTATCTGTTCCTCGGTTATTTCCCCTTGTCCGGTTTTTTCGTGAAAGTTGAGACAGATTTCACTGGGAATGTTTGCTTCCGTGTTGCCGCGCTGCAAGTTTGTTAGCACCGTGTTCGAAGGTTTGTACGGCAGGAAGGCACTTTTCCTTTTGCCGCTCGCCAGCAGCAATG ] [-] EMBL CNS09D8M [ AGCTGATGTATGGCGGACTCGCCGTCCTCGTTCGTCTCGGTAAAGCTAGCCCCGGAATTTAGCAGCTCGTTACAGGTGTGGGGATGGTTGCCGGCAGCCG CATACATGAGCGCAGTATTGCCTACGATGTCCATGTGATTGACCACTGCTCCGTTTTCCACCAGCAATCGGACGATCTCATTGTGTCCACCTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATAAGAATACTGGC CG CCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAACTGATCGGCATCTGGAACGTCGACCGCCTGTTCCGCCCGTATCTGTTCCTCGGTTATTTCCCCTTGTCCGGTTTTTTCGTGAAAGTTGAGACAGATTTCACTGGGAATGTTTGCTTCCGTGTTGCCGCGCTGCAAGTTTGTTAGCACCGTGTTCGAAGGTTTGTACGGCAGGAAGGCACTTTTCCTTTTGCCGCTCGCCAGCAGCAATGGATTGAAATCCATCTTTCTATCATCCTCGGAATTTGGAGACGAGCTCATGGTGAACGAATTCGGTGTTTGTGTGGTGATTATT] [-] EMBL BX623830 [ CTGTTCCGCCCGTATCTGTTCCTCGGTTATTTCCCCTTGTCCGGTTTTTTCGTGAAAGTTGAGACAGATTTCACTGGGAATGTTTGCTTCCGTGTTGCCGCGCTGCAAGTTTGTTAGCACCGTGTTCGAAGGTTTGTACGGCAGGAAGGCACTTTTCCTTTTGCCGCTCGCCAGCAGCAATGGATTGAAATCCATCTTTCTATCATCCTCGGAATTTGGAGACGAGCTCATG ] [-] EMBL BX627365 [ CGAAGGCTTGTACGGCAGGAAGGCACTTTTTCTTTTGCCGCTCGCCAGCAGCAATGGATTGAAATCCATCTTTCTgtgagg ] consensusID : consensus_7101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [AAGCTAGCCCTCGGAATATAGCAGCTCGNNACAGGTGTGGGGATGGTTGCCGGCAGCCGCATACATGAGCGCAGTATTGCTTACGATGTCCATGTGATTCACCACTGCTCNGTTTTCCACCAGCTATCGGACGATCTCTATTGTGTCCACNTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATACAGAATACTGGCCGCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAATNTGGTCGGCATCTGGTAACGTACGAACCGCCATGTTTCCGCCCGTATCTAGTNTCCTACGGTTTATTTCCCCTTGCCCGGTTTTATTCTGTCGAAAGNTTGAGACAGATTTCACTGGGAAATGTTTGCTTCCGTGCTTGCCGCGCTGACAAGATCTTGATTAGCACCGTGTTCGAANGGACTTGTCACGNGCAGCGAAGGCACTTTTCCTTTTGCCGCTGCGCCAGCAGCAATGGATTGNAAATCCATCTTTCTATCATCCTCGGAATTTGGAGTACCGAGCTNCATGGT] [-] EMBL BX624305 [AAGCTAGCCCTCGGAATATAGCAGCTCGNNACAGGTGTGGGGATGGTTGCCGGCAGCCGCATACATGAGCGCAGTATTGCTTACGATGTCCATGTGATTCACCACTGCTCNGTTTTCCACCAGCTATCGGACGATCTCTATTGTGTCCACNTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATACAGAATACTGGCCGCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAATNTGGTCGGCATCTGGTAACGTACGAACCGCCATGTTTCCGCCCGTATCTAGTNTCCTACGGTTTATTTCCCCTTGCCCGGTTTTATTCTGTCGAAAGNTTGAGACAGATTTCACTGGGAAATGTTTGCTTCCGTGCTTGCCGCGCTGACAAGATCTTGATTAGCACCGTGTTCGAANGGACTTGTCACGNGCAGCGAAGGCACTTTTCCTTTTGCCGCTGCGCCAGCAGCAATGGATTGNAAATCCATCTTTCTATCATCCTCGGAATTTGGAGTACCGAGCTNCATGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7101#0 ATAAAAGCATATTTTATTTCTTTTGGGGATTTTTGAAATATTTTTGCACGATTTTTTTTA 60 consensus_7101#1 ------------------------------------------------------------ consensus_7101#0 CGTTAAAATACTACCAACATTCTCAATGGGTTTGTTCAATGGTTTATCTGATTATCACAT 120 consensus_7101#1 ------------------------------------------------------------ consensus_7101#0 ATCTTTCCTCCAAAAAGCACGGCTCCCCTTCACGTCATCAACAGTGCTGTGATGTGATTT 180 consensus_7101#1 ------------------------------------------------------------ consensus_7101#0 TCTAGCACAGCCTGCGCCAGATTAGCGTTGTTTTTCACCGCCAGCGAGTAGGCGGACTCG 240 consensus_7101#1 ------------------------------------------------------------ consensus_7101#0 CCGTCCTCGTTCGTCTCGGTAAAGCTAGCCC-CGGAATTTAGCAGCTCGTTACAGGTGTG 299 consensus_7101#1 ---------------------AAGCTAGCCCTCGGAATATAGCAGCTCGNNACAGGTGTG 39 ********** ****** ********** ********* consensus_7101#0 GGGATGGTTGCCGGCAGCCGCCATACATGAGCGCAGTATTGCCTACGATGTCCATGTGAT 359 consensus_7101#1 GGGATGGTTGCCGGCAGCCGC-ATACATGAGCGCAGTATTGCTTACGATGTCCATGTGAT 98 ********************* ******************** ***************** consensus_7101#0 TGACCACTGCTCCGTTTTCCACCAGCAATCGGACGATCTC-ATTGTGTCCACCTGCTCCT 418 consensus_7101#1 TCACCACTGCTCNGTTTTCCACCAGCTATCGGACGATCTCTATTGTGTCCACNTGCTCCT 158 * ********** ************* ************* *********** ******* consensus_7101#0 GCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTG 478 consensus_7101#1 GCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTG 218 ************************************************************ consensus_7101#0 ATA-AGAATACTGGCGCGCCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTG 537 consensus_7101#1 ATACAGAATACTGGC-CGCC-GCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTG 276 *** *********** **** *************************************** consensus_7101#0 AA-CTGATCGGCATCTGG-AACGTC--GACCGCC-TGTT-CCGCCCGTATCTGTTCCTC- 590 consensus_7101#1 AATNTGGTCGGCATCTGGTAACGTACGAACCGCCATGTTTCCGCCCGTATCTAGTNTCCT 336 ** ** *********** ***** ****** **** ************ * * consensus_7101#0 ---GGTTATTTCCCCTTGTCCGGTTTTTTCGTG----AAAGTTGAGACAGATTTCACTGG 643 consensus_7101#1 ACGGTTTATTTCCCCTTGCCCGGTTTTATTCTGTCGAAAGNTTGAGACAGATTTCACTGG 396 * ************* ******** * ** ** ******************* consensus_7101#0 GAA-TGTTTGCTTCCGTG-TTGCCGCGCTG-CAAG---TTTGTTAGCACCGTGTTCGAAG 697 consensus_7101#1 GAAATGTTTGCTTCCGTGCTTGCCGCGCTGACAAGATCTTGATTAGCACCGTGTTCGAAN 456 *** ************** *********** **** ** ***************** consensus_7101#0 G--TTTGT-ACGG-CAG-GAAGGCACTTTTCCTTTTGCCGCT-CGCCAGCAGCAATGGAT 751 consensus_7101#1 GGACTTGTCACGNGCAGCGAAGGCACTTTTCCTTTTGCCGCTGCGCCAGCAGCAATGGAT 516 * **** *** *** ************************ ***************** consensus_7101#0 TGAAA-TCCATCTTTCTATCATCCTCGGAATTTGGAGA--CGAGCTC-ATGGTGAACGAA 807 consensus_7101#1 TGNAAATCCATCTTTCTATCATCCTCGGAATTTGGAGTACCGAGCTNCATGGT------- 569 ** ** ******************************* ****** ***** consensus_7101#0 TTCGGTGTTTGTGTGGTGATTATT 831 consensus_7101#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||