These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1244 fasta sequence [CCGAAAGAAGACAAGCAAATCAAGCCAACAATTTCGGTCTCGGAATTTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTAGCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACAT-CCCGGACCCGATCTTTA-CCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGGCGGGCGCTGAAGTACAAAAACACCTGCCTGTTTGGCGGTGGGAAGAAGCGCAAGCAGCAGGACGATTTGGAGTACGGGGTGGAAATCGTGATCGCCACGCCCGGCCGGCTGATTGACTTTCTGTCGAGCAACCAGACGAACCTGCGCCGCTGCTCGTACCTGGTGCTGGACGAGGCGGATCGTATGCTGGACATGGGGTTCGAGCCGCAGATACGCACCATCATTGAGCAGATCCGTCCCGACCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATCGTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTGGGATCGCTGAAGCTGGCGGCGAACCACAACATCCTGCAGATAATCGACGTTTGCCAGGAGTACGAGAAGGAGTCGAAGCTGAGCATACTGCTGCGCGAGATAATGGCCGAGAAGGAGTGCAAAACGATCATCTTCATCGAGACGAAGAAGCGCGTCGATGATATCACGCGCAAGGTGAAGCGTGACGGTTGG] [+] EMBL BM649606 [CCGAAAGAAGACAAGCAAATCAAGCCAACAATTTCGGTCTCGGAATTTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTAGCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACATCCCCGGACCCGATCTTTACCCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGG ] [+] EMBL BM584164 [ ccgAAGCAAATCAAGCCAACAATTTCGGTCTCGGAATTTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTAGCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACAT CCCGGACCCGATCTTTA CCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGG ] [+] EMBL BM642370 [ ccgCAATTTCGGTCTCGGAATTTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTAGCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACAT CCCGGACCCGATCTTTA CCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGA ] [+] EMBL BX608280 [ CATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGGCGGGCGCTGAAGTACAAAAACACCTGCCTGTTTGGCGGTGGGAAGAAGCGCAAGCAGCAGGACGATTTGGAGTACGGGGTGGAAATCGTGATCGCCACGCCCGGCCGGCTGATTGACTTTCTGTCGAGCAACCAGACGAACCTGCGCCGCTGCTCGTACCTGGTGCTGGACGAGGCGGATCGTATGCTGGACATGGGGTTCGAGCCGCAGATACGCACCATCATTGAGCAGATCCGTCCCGACCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATCGTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTGGGATCGCTGAAGCTGGCGGCGAACCACAACATCCTGCAGATAATCGACGTTTGCCAGGAGTACGAGAAGGAGTCGAAGCTGAGCATACTGCTGCGCGAGATAATGGCCGAGAAGGAGTGCAAAACGATCATCTTCATCGAGACGAAGAAGCGCGTCGATGATATCACGCGCAAGGTGAAGCGTGACGGTTGG] consensusID : consensus_7105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [ATCCCCCGAGGTTATCTCGGAATTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGTGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGTGGNGCCGGTGGTGTGACTGCCTGGGTAGCCGGTACGAAATCGGCAAACTGCAAACTGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCTGTACCGTTCCAAGGCAACGTACCTGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACATCCCGGACCCGATCTTTACCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGGCTCGGGGGAAAACACTTGTTCCTAACCCTGATTCCCCCGCCCTGATAACACATTCGATCAGCAGCGCGGGCTTCGCCGTGGGCGACGGGCCGAATCGCGCTGATTACTAGCGCCAAGCGCCGAACTACGCANAGAATCA] [+] EMBL AL932113 [ATCCCCCGAGGTTATCTCGGAATTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGTGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGTGGNGCCGGTGGTGTGACTGCCTGGGTAGCCGGTACGAAATCGGCAAACTGCAAACTGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCTGTACCGTTCCAAGGCAACGTACCTGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACATCCCGGACCCGATCTTTACCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGGCTCGGGGGAAAACACTTGTTCCTAACCCTGATTCCCCCGCCCTGATAACACATTCGATCAGCAGCGCGGGCTTCGCCGTGGGCGACGGGCCGAATCGCGCTGATTACTAGCGCCAAGCGCCGAACTACGCANAGAATCA] consensusID : consensus_7105#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGCGGACGCGTGGGTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGGCGGGCGCTGAAGTACAAAAACACCTGCCTGTTTGGCGGTGGGAAGAAGCGCAAGCAGCAGGACGATCTGGAGTACGGGGTGGAAATCGTGATCGCCACGCCCGGTCGGCTGATTGACTTTCTGTCGAGCAACCAGACGAACCTGCGCCGCTGCTCGTACCTGGTGCTGGACGAGGCGGATCGTATGCTGGACATGGGGTTCGAGCCGCAGATACGCACCATCATTGAGCAGATCCGTCCCGATCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATCGTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTGGGATCGCAGAAGCTGGCGGCGAACCACAACATCCTGCAGATAATCGACGTTTGCC] [+] EMBL BM656552 [CCGCGGACGCGTGGGTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGGCGGGCGCTGAAGTACAAAAACACCTGCCTGTTTGGCGGTGGGAAGAAGCGCAAGCAGCAGGACGATCTGGAGTACGGGGTGGAAATCGTGATCGCCACGCCCGGTCGGCTGATTGACTTTCTGTCGAGCAACCAGACGAACCTGCGCCGCTGCTCGTACCTGGTGCTGGACGAGGCGGATCGTATGCTGGACATGGGGTTCGAGCCGCAGATACGCACCATCATTGAGCAGATCCGTCCCGATCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATCGTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTGGGATCGCAGAAGCTGGCGGCGAACCACAACATCCTGCAGATAATCGACGTTTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7105#0 CCGAAAGAAGACAAGCAAATCAAGCCAACAATTTCGGTCTCGGAATTTTGTGGGATTTTC 60 consensus_7105#2 ------------------------------------------------------------ consensus_7105#1 ------------------------------------------------------------ consensus_7105#0 CATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCA 120 consensus_7105#2 ------------------------------------------------------------ consensus_7105#1 ------------------------------------------------------------ consensus_7105#0 TCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCC 180 consensus_7105#2 ------------------------------------------------------------ consensus_7105#1 ------------------------------------------------------------ consensus_7105#0 GCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTA 240 consensus_7105#2 ------------------------------------------------------------ consensus_7105#1 ------------------------------------------------------------ consensus_7105#0 GCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGC 300 consensus_7105#2 ------------------------------------------------------------ consensus_7105#1 ------------------------------------------------------------ consensus_7105#0 TGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCG 360 consensus_7105#2 ------------------------------------------------------------ consensus_7105#1 ------------------------------------------------------------ consensus_7105#0 AGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACATCCCGGACC 420 consensus_7105#2 ---------------------------------------------------CCGCGGACG 9 consensus_7105#1 -------------------------------------------------ATCCCCCGAGG 11 * * ** consensus_7105#0 CGATCTTTACCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACG 480 consensus_7105#2 CG-----TGGGTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACG 64 consensus_7105#1 TTATCTCGGAATTTGTGGGATTT--TCCATCGGTAAAACTTGTTCCTACAGCGTACGAAA 69 ** * * * *** ** * ** * * consensus_7105#0 CCGGCTTTACCACGCCCACGCCGATCCAGGCC-CAGGGCTGGCCGATTGCACTGTCCGGC 539 consensus_7105#2 CCGGCTTTACCACGCCCACGCCGATCCAGGCC-CAGGGCTGGCCGATTGCACTGTCCGGC 123 consensus_7105#1 GGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGC 129 ** * * * ** ** *** * * ** ** ** ** consensus_7105#0 CGGGATATGGTCGGCATCGCGAAAACAGGC--TCGGGGAAAACACTGTCCTACCTGATCC 597 consensus_7105#2 CGGGATATGGTCGGCATCGCGAAAACAGGC--TCGGGGAAAACACTGTCCTACCTGATCC 181 consensus_7105#1 AGTATTTGCAGCGTGAAAGTGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGT 189 * * ** * * ** * ** * * * * * *** * ** consensus_7105#0 CCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGC 657 consensus_7105#2 CCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGC 241 consensus_7105#1 CC-CCGTGGNGCCGGTGGTGTGACTGCCTGGG--TAGCCGGTACGA--AATCGG-CAAAC 243 ** ** ** * * * * *** ** * **** *** ** * * consensus_7105#0 TGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTG 717 consensus_7105#2 TGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTG 301 consensus_7105#1 TGCAAACTGCTCCGACCCGTCCAGTGGTCC--CAGGTGAAGCTGGACCCGATCGTGCGGG 301 ** * ** ** ** ** * * * ** * ** * ** ** ** * consensus_7105#0 GGCGGGCGCTGAAGTACAAAAAC--ACCTGCCTGTTTGGCGGTGGGA------AGAAGCG 769 consensus_7105#2 GGCGGGCGCTGAAGTACAAAAAC--ACCTGCCTGTTTGGCGGTGGGA------AGAAGCG 353 consensus_7105#1 AACCTGTACCGTTCCAAGGCAACGTACCTGGCGGTCCGAGCGCGAGATCTCCGAATGGCG 361 * * * * * *** ***** * ** * * * ** * *** consensus_7105#0 CAAGCAGCAGGACGATTTGGAGTACGGGGTG-GAAATCGTGATCGCCACGCCCGG--CCG 826 consensus_7105#2 CAAGCAGCAGGACGATCTGGAGTACGGGGTG-GAAATCGTGATCGCCACGCCCGG--TCG 410 consensus_7105#1 CCGATCGAAGGA-AATCACCACCAAGGGCCACGACATCCCGGACCCGATCTTTACCTTCG 420 * * **** ** * * *** ** *** * * * * ** consensus_7105#0 GCTGATT-GACTTTCTGTCGAGCAAC-CAGACGAACCTGCGC-CGCTGCTCGTACCTGGT 883 consensus_7105#2 GCTGATT-GACTTTCTGTCGAGCAAC-CAGACGAACCTGCGC-CGCTGCTCGTACCTGGT 467 consensus_7105#1 AAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGC 480 * * *** * * ** * * ***** * * *** * **** * consensus_7105#0 GCTGGACGAGGCGGATCGTATGCTGGACATGGGGTT--CGAGCCGCAGATACGCACCATC 941 consensus_7105#2 GCTGGACGAGGCGGATCGTATGCTGGACATGGGGTT--CGAGCCGCAGATACGCACCATC 525 consensus_7105#1 CCACGCCGATCCAGGCCCAGGGCTGCCGATTGCACTGTCCGGCCG-GGATATG-GTCGGC 538 * * *** * * * **** ** * * * **** **** * * * consensus_7105#0 ATTGAGCAGATCCGTCCCGACCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATC 1001 consensus_7105#2 ATTGAGCAGATCCGTCCCGATCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATC 585 consensus_7105#1 ATCGCGAAAACAGGGCTCGGG-GGAAAACACTTGTTCCTAACCCTGATTCCCCCGCCCTG 597 ** * * * * * * ** ** * ** ** * * * **** * * consensus_7105#0 GTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTG--GGATCGC 1059 consensus_7105#2 GTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTG--GGATCGC 643 consensus_7105#1 ATAACACATTCGATCAGCAGC------GCGGGCTTCGCCGTGGGCGACGGGCCGAATCGC 651 * * * * * * ** ** *** * * * * * * ***** consensus_7105#0 TGAAGCTGGCGGCG--AACCACAACATCCTGCAGATAATCGACGTTTGCCAGGAGTACGA 1117 consensus_7105#2 AGAAGCTGGCGGCG--AACCACAACATCCTGCAGATAATCGACGTTTGCC---------- 691 consensus_7105#1 GCTGATTACTAGCGCCAAGCGCCGAACTACGCANAGAATCA------------------- 692 * *** ** * * * *** * **** consensus_7105#0 GAAGGAGTCGAAGCTGAGCATACTGCTGCGCGAGATAATGGCCGAGAAGGAGTGCAAAAC 1177 consensus_7105#2 ------------------------------------------------------------ consensus_7105#1 ------------------------------------------------------------ consensus_7105#0 GATCATCTTCATCGAGACGAAGAAGCGCGTCGATGATATCACGCGCAAGGTGAAGCGTGA 1237 consensus_7105#2 ------------------------------------------------------------ consensus_7105#1 ------------------------------------------------------------ consensus_7105#0 CGGTTGG 1244 consensus_7105#2 ------- consensus_7105#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||