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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 935 fasta sequence
[GCAGAATCGGCACGAGGACGCAAATTAAGTTTTCCCGTGCCAAAAGAATGTCGCTGCTTCCCGTGCTGAGCCGGTTGCTCCCGCTCGTGGGCCAATCGGCGGCGAGATCCGTCCACAGCGGGACCGGCCTGCTGTTCCGCAGCACACCGGTGCTGTGTGCCGAACCGCTCAAGAAGAAGAAAAAGCTCGACCCACAGATCGTGAAGCAGCGGGAGGAGCGCAAACGGAAGCGGCTGGAGAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGAGGTGCCGATGGAGCTGATCGACGAGCAAAGCAAACGGAAGCGAAACGTGCCGAAACCGACGGCCGAGCTGCTCGAAAGCCGCGCCCTGCTCGAGAAGCAGTGGGCCAAGTACCGCATGCAGGAGAAGCTGGCCGACTACCAGCTGTTCGATCGGATCGTGGCGGCCCAGGCGAA-GGCGCTGGGCGAGCTGCAGCTCGCGTCGG-ACGAGC-TGTACCAGCGGGCGATACAGCCCGACCCGGCCCTGCTACCG-TTCGTGGCGC-AGGGTCCCGTCTCTACCCC-GCCGATTCAAAGACTACGAAGCCAACCCGGAACGGCGGAGTTACCATCGACGTGTTCGGACAGGAAGTGGGGAATAGTTGGTGACCTGGGGTATAGGGGTAATGGGAATTGTTGCGTTGTCTAGGTACGAAAACTGTTCCGCGCGGAGATTATATTTAACCCTTTACCCAACCTTAATTGTTANCCAAACCTTTACNAATNAAAGGGGGCCCCCGGACCAAGCGTTAAACAACTTTCACGTTTTCCACATTTCTCGCAAATTAAAACGGAACACCAACCNCAAAACAAAACAATATAAAACACAGGACATTTTCGANGCCACAAATNTTATTACCCTATATAAGCGTCTACACATCCA]
[+] EMBL BX467550 [GCAGAATCGGCACGAGGACGCAAATTAAGTTTTCCCGTGCCAAAAGAATGTCGCTGCTTCCCGTGCTGAGCCGGTTGCTCCCGCTCGTGGGCCAATCGGCGGCGAGATCCGTCCACAGCGGGACCGGCCTGCTGTTCCGCAGCACACCGGTGCTGTGTGCCGAACCGCTCAAGAAGAAGAAAAAGCTCGACCCACAGATCGTGAAGCAGCGGGAGGAGCGCAAACGGAAGCGGCTGGAGAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGAGGTGCCGATGGAGCTGATCGACGAGCAAAGCAAACGGAAGCGAAACGTGCCGAAACCGACGGCCGAGCTGCTCGAAAGCCGCGCCCTGCTCGAGAAGCAGTGGGCCAAGTACCGCATGCAGGAGAAGCTGGCCGACTACCAGCTGTTCGATCGGATCGTGGCGGCCCAGGCGAA GGCGCTGGGCGAGCTGCAGCTCGCGTCGGAACGAGC TGTACCAGCGGGCGATACAGCCCGACCCGGCCCTGTTACCGTTTCGTGGCGCAAGGGTCCCGTCTCTACCCCGGCCGATTCAAAGACTACGAAGCCAACCCGGAACGGCGGAGTTACCATCGACGTGTTCGGACAGGAAGTGGGGAATAGTTGGTGACCTGGGGTATAGGGGTAATGGGAATTGTTGCGTTGTCTAGGTACGAAAACTGTTCCGCGCGGAGATTATATTTAACCCTTTACCCAACCTTAATTGTTANCCAAACCTTTACNAATNAAAGGGGGCCCCCGGACCAAGCGTTAAACAACTTTCACGTTTTCCACATTTCTCGCAAATTAAAACGGAACACCAACCNCAAAACAAAACAATATAAAACACAGGACATTTTCGANGCCACAAATNTTATTACCCTATATAAGCGTCTACACATCCA]
[+] EMBL BM599285 [ ccgCGCTGCTTCCCGTGCTGAGCCGGTTGCTCCCGCTCGTGGGCCAATCGGCGGCGAGATCCGTCCACAGCGGGACCGGCCTGCTGTTCCGCAGCACACCGGTGCTGTGTGCCGAACCGCTCAAGAAGAAGAAAAAGCTCGACCCACAGATCGTGAAGCAGCGGGAGGAGCGCAAACGGAAGCGGCTGGAGAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGAGGTGCCGATGGAGCTGATCGACGAGCAAAGCAAACGGAAGCGAAACGTGCCGAAACCGACGGCCGAGCTGCTCGAAAGCCGCGCCCTGCTCGAGAAGCAGTGGGCCAAGTACCGCATGCAGGAGAAGCTGGCCGACTACCAGCTGTTCGATCGGATCGTGGCGGCCCAGGCGAAGGGCGCTGGGCGAGCTGCAGCTCGCGTCGG ACGAGCTTGTAC ]
[+] EMBL BX614408 [ AGCGGGACCGGCCTGCTGTTCCGCAGCACACCGGTGCTGTGTGCCGAACCGCTCAAGAAGAAGAAAAAGCTCGACCCACAGATCGTGAAGCAGCGGGAGGAGCGCAAACGGAAGCGGCTGGAGAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGAGGTGCCGATGGAGCTGATCGACGAGCAAAGCAAACGGAAGCGAAACGTGCCGAAACCGACGGCCGAGCTGCTCGAAAGCCGCGCCCTGCTCGAGAAGCAGTGGGCCAAGTACCGCATGCAGGAGAAGCTGGCCGACTACCAGCTTTTCGATCGGATCGTGGCGGCCCAGGCGAA GGCGCTGGGCGAGCTGCAGCTCGCGTCGG ACGAGC TGTACCAGCGGGCGATACAGCCCGACCCGGCCCTGCTACCG TTCGTGGCGC AGGGTCCCGTCTCTACCCC GCCGA TCAAAGACTACG AG CAA CCGG ACGGC GAG TA CATCGACGTG TCG C GGAAGT GGGAATA TT GTGACCTGG ]
[+] EMBL BM620501 [ ATGCATGATAAGCTGGCCGACTACCATCTGTTCGATCGGATCGTGGCGGCCCAGGCGAA GGCGCTGGGCGAGCTGCATCTCGCGTCGG ACGATC TGTACCAGCGGGCGATACAGCCCGACCCGGCCCTGCTACCG TTCGTGGCGC AGGGTCCCGTCTCTACCCC GCCGATcta ]
consensusID : consensus_7109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[CCCCCCCCCCCCCCCCATGCTCCAGCAGAATCGCCCGAGGTTAACGCTCAGCAACCAAGAAAAAGCTCGACCCACAGATCGTGAAGCAGCGGGAGGAGCGCAAACGGAAGCGGCTGGAGAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGAGGTGCCGATGGAGCTGATCGACGAGCAAAGCAAACGGAAGCGAAACGTGCCGAAACCGACGGCCGAGCTGCTCGAAAGCCGCGCCCTGCTCGAGAAGCAGTGGGCCAAGTACCGCATGCAGGAGAAGCTGGCCGACTACCAGCTGTTCGATCGGATCGTGGCGGCCCAGTGCGAAGGCGCTGGGCGAGCTGCAGCTCGCGTCGGACGAGCTGTACCAGCGGGCGATACAGCCCGACCCGGCCCTGCTACCGTTCGTGGCGCAGGGTCCCGTCTCTACCCCGCGTATCAAAGACTACGAGCAACCGGACGGCGAGTACATCGACGTGTCGCGGAAGTGGGAATAGTGTGACCTGGGGTNNGGGTATACNGGGAGTGTTGCGTGTCTAGGTACGAAACTGTCGCGGCGATTCATTATTCTACCTTACCACTAATGTGCGAACCTTTCTATTTANGGGCCGGCGANGGT]
[+] EMBL AL932233 [CCCCCCCCCCCCCCCCATGCTCCAGCAGAATCGCCCGAGGTTAACGCTCAGCAACCAAGAAAAAGCTCGACCCACAGATCGTGAAGCAGCGGGAGGAGCGCAAACGGAAGCGGCTGGAGAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGAGGTGCCGATGGAGCTGATCGACGAGCAAAGCAAACGGAAGCGAAACGTGCCGAAACCGACGGCCGAGCTGCTCGAAAGCCGCGCCCTGCTCGAGAAGCAGTGGGCCAAGTACCGCATGCAGGAGAAGCTGGCCGACTACCAGCTGTTCGATCGGATCGTGGCGGCCCAGTGCGAAGGCGCTGGGCGAGCTGCAGCTCGCGTCGGACGAGCTGTACCAGCGGGCGATACAGCCCGACCCGGCCCTGCTACCGTTCGTGGCGCAGGGTCCCGTCTCTACCCCGCGTATCAAAGACTACGAGCAACCGGACGGCGAGTACATCGACGTGTCGCGGAAGTGGGAATAGTGTGACCTGGGGTNNGGGTATACNGGGAGTGTTGCGTGTCTAGGTACGAAACTGTCGCGGCGATTCATTATTCTACCTTACCACTAATGTGCGAACCTTTCTATTTANGGGCCGGCGANGGT]
consensusID : consensus_7109#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[CCGAAAATTTAGTCCCGCAAATTAAGTTTTCCCGTGCGAAAGAATGTCGCTGCTTCCCGTGCTGAGCCGGTAAGGCGTTTAGCCCGATCATGGCTGTCCCGTCCCATGCCGCCCCCCCGGTACCTAACCTCTCTGCGCTTTTAGGTTGCTCCCGCTCGTGGGCCAATCGGCGGCGAGATCCGTCCACAGCGGGACCGGCCTGCTGTTCCGCAGCACACCGGTGCTGTGTGCCGAACCGCTCAAGAAGAAGAAAAAGCTCGACCCACAGATCGTGAAGCATCGGGAGGAGCGCAAACGGAAGCGACTGGAGAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGAGGTGCCGATGGAGCTGATCGACGAGCAAAG]
[+] EMBL BM642804 [CCGAAAATTTAGTCCCGCAAATTAAGTTTTCCCGTGCGAAAGAATGTCGCTGCTTCCCGTGCTGAGCCGGTAAGGCGTTTAGCCCGATCATGGCTGTCCCGTCCCATGCCGCCCCCCCGGTACCTAACCTCTCTGCGCTTTTAGGTTGCTCCCGCTCGTGGGCCAATCGGCGGCGAGATCCGTCCACAGCGGGACCGGCCTGCTGTTCCGCAGCACACCGGTGCTGTGTGCCGAACCGCTCAAGAAGAAGAAAAAGCTCGACCCACAGATCGTGAAGCATCGGGAGGAGCGCAAACGGAAGCGACTGGAGAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGAGGTGCCGATGGAGCTGATCGACGAGCAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7109#0 GCAGAATCGGCACGAGGACGCAAATTAAGTTTTCCCGTGCCAAAAGAATGTCGCTGCTTC 60
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 CCGTGCTGAGCCGGTTGCTCCCGCTCGTGGGCCAATCGGCGGCGAGATCCGTCCACAGCG 120
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 GGACCGGCCTGCTGTTCCGCAGCACACCGGTGCTGTGTGCCGA-ACCGCTCAAGAAG-AA 178
consensus_7109#1 --CCCCCCCCCCCCCCCCATGCTCCAGCAGAATCGCCCGAGGTTAACGCTCAGCAACCAA 58
consensus_7109#2 -----------------------------------------CCGAAAATTTAGTCCCGCA 19
* * * *
consensus_7109#0 GAAAAAGCTCGACCCACAGATCGTGAAGCAGCGGGAGGAGCGCAAACGGAAGCGGCTGGA 238
consensus_7109#1 GAAAAAGCTCGACCCACAGATCGTGAAGCAGCGGGAGGAGCGCAAACGGAAGCGGCTGGA 118
consensus_7109#2 AATTAAGTTTTCCC----GTGCGAAAGAATGTCGCTGCTTCCCGTGCTGAGCCGG-TAAG 74
* *** * ** * ** * * * * * * * ** *** *
consensus_7109#0 GAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGA 298
consensus_7109#1 GAAGCAAATTCGCCGGCTGGAGAAGAACGCCCGCCAGCTCAAACCGATCGAGGAGCTCGA 178
consensus_7109#2 GCGTTTAGCCCGATCATGGCTGTCCCGTCCCATGCCGCCCCC-CCGGTACCTAACCTCTC 133
* * ** * * ** * ** * *** * * ***
consensus_7109#0 GGTGCCGATGGAGCTGATCGACGAGCAAAGCAAACGGAAGCGAAACGTGCCGAAACCGAC 358
consensus_7109#1 GGTGCCGATGGAGCTGATCGACGAGCAAAGCAAACGGAAGCGAAACGTGCCGAAACCGAC 238
consensus_7109#2 TGCGCTTTTAGGTTGCTCCCGCTCGTGGGCCAATCGGCGGCGAGATCCGTCCACAGCGG- 192
* ** * * * * * *** *** **** * * * * * **
consensus_7109#0 GGCCGAGCTGCTCGAAAGCCGCGCCCTGCTCGAGAAGCAGTGGGCCAAGTACCGCATGCA 418
consensus_7109#1 GGCCGAGCTGCTCGAAAGCCGCGCCCTGCTCGAGAAGCAGTGGGCCAAGTACCGCATGCA 298
consensus_7109#2 GACCGGCCTGCTGTTCCGCAGCACACCGGT------GCTGTGTGCCGAACCGCTCAAGAA 246
* *** ***** ** ** * * * * ** *** *** * * ** * *
consensus_7109#0 GGAGAAGCTGGCCGACTACCAGCTGTTCGATCGGATCGTGGCGGCCCAG-GCGAAGGCGC 477
consensus_7109#1 GGAGAAGCTGGCCGACTACCAGCTGTTCGATCGGATCGTGGCGGCCCAGTGCGAAGGCGC 358
consensus_7109#2 GAAGAAAAAGCTCGACCCACAGATCGTGAAGC--ATCGGGAGGAGCGCAAACGGAAGCGA 304
* **** * **** *** * * * * **** * * * ** * ***
consensus_7109#0 TGGGCGAGCTGCAGCTCGCGTCGGACGAGCTGTACCAGCGGGCGATACAGCCCGACCCGG 537
consensus_7109#1 TGGGCGAGCTGCAGCTCGCGTCGGACGAGCTGTACCAGCGGGCGATACAGCCCGACCCGG 418
consensus_7109#2 CTGGAGAA--GCAAATT-CGCCGG-----CTGGAGAAGAACGCCCGCCAGCTCAAACCGA 356
** ** *** * ** *** *** * ** ** **** * * ***
consensus_7109#0 CCCTGCTACCGTTCGTGGCGCAGGGTCCCGTCTCTACCCCGCCGATTCAAAGACTACGAA 597
consensus_7109#1 CCCTGCTACCGTTCGTGGCGCAGGGTCCCGTCTCTACCCCGC-GTATCAAAGACTACGAG 477
consensus_7109#2 TCGAG---GAGCTCGAGGTGCCGA----TGGAGCTGATCGAC--GAGCAAAG-------- 399
* * * *** ** ** * * ** * * *****
consensus_7109#0 GCCAACCCGGAACGGCGGAGTTACCATCGACGTGTTCGGACAGGAAGTGGGGAATAGTTG 657
consensus_7109#1 --CAACC--GGACGGCGAG--TAC-ATCGACGTGTCG----CGGAAGTGGG-AATAGT-- 523
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 GTGACCTGGGGTATAGGGGTAATGGGAATTGTTGCGTTGTCTAGGTACGAAAACTGTTCC 717
consensus_7109#1 GTGACCTGGGGTNNGGGTATACNGGGAGT-GTTGCGT-GTCTAGGTACGAAA-CTGT--- 577
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 GCGCGGAGATTATATTTAACCCTTTACCCAACCTTAATTGTTANCCAAACCTTTACNAAT 777
consensus_7109#1 -CGCGGCG-----ATTCATTATTCTACCTTACC---ACTAATGTGCGAACCTTT-CTATT 627
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 NAAAGGGGGCCCCCGGACCAAGCGTTAAACAACTTTCACGTTTTCCACATTTCTCGCAAA 837
consensus_7109#1 TANGGGCCGGCGANGGT------------------------------------------- 644
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 TTAAAACGGAACACCAACCNCAAAACAAAACAATATAAAACACAGGACATTTTCGANGCC 897
consensus_7109#1 ------------------------------------------------------------
consensus_7109#2 ------------------------------------------------------------
consensus_7109#0 ACAAATNTTATTACCCTATATAAGCGTCTACACATCCA 935
consensus_7109#1 --------------------------------------
consensus_7109#2 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||