These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 938 fasta sequence [CCGCCGCCATCCCAGTGCCACCCAAGGTTTTGGGGGTGGAAGTGAGAGTTGTGCTTTTGCTTCTGGCTTTCGGTGGCTGAGGTTGAACCGTTCGCGGTCAGTTGTAGTATTGCCCCGTGCGAGGATAGAGAGCGCACAGGCGCGCGACAATCAACACGAACCGTGACACGCTGGTGAAGCGATACGCGAGTGAGCGTGAATAGAGCGTTGACTAATAGAATCAGCAGCATGGTACCGTCGGGACCAGCAGGTGTTTCAAAGATGCTGCCAAGTA-CCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCATCATTTTCTACTCTCGCTGGGTTTATG-TTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGTGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG-TC-GTCAG-CGTGGGTG-CGCGCA-CGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAATTTGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTAAAACCAAAAAAATCTAAAATAAAAAAGGCAGCATGTGC] [+] EMBL BX623556 [CCGCCGCCATCCCAGTGCCACCCAAGGTTTTGGGGGTGGAAGTGAGAGTTGTGCTTTTGCTTCTGGCTTTCGGTGGCTGAGGTTGAACCGTTCGCGGTCAGTTGTAGTATTGCCCCGTGCGAGGATAGAGAGCGCACAGGCGCGCGACAATCAACACGAACCGTGACACGCTGGTGAAGCGATACGCGAGTGAGCGTGAATAGAGCGTTGACTAATAGAATCAGCAGCATGGTACCGTCGGGACCAGCAGGTGTTTCCAAGATGCTGCCAAGTA CCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCATCATTTTCTACTCTCGCTGGGTTTATG TTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGTGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG TC GTCAG CGTGGGTG CGCGCA CGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGNTT AAATGGTGTGCTAAAG TAATCACTAATTTGCT AGTGTTGATATTAATAAACGTT AACCTACCGCGTATGTGTCGCAC ] [+] EMBL CNS0955R [ CACGAACCGTGACACGCTGGTGAAGCGATACGCGAGTAAGCGTGAATAGAGCGTTGACTAATAGAATCAGCAGCATGGTACCGTCGGGACCAGCAGGTGTTTCAAAGATGCTGCCAAGCA CCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCACCATTTTCTACTCTCGCTGGGTTTATG TTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGAGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG TC GTCAG CGTGGGTG CGCGCA CGAAGCCGTCCGCCGGTGCGGATGGTTCGCAACGCCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGCACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGAAACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAA ] [-] EMBL CNS0955S [ ATGGTACCGTCGGGACCAGCAGGTGTTTCAAAGATGCTGCCAAGCA CCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCACCATTTTCTACTCTCGCTGGGTTTATG TTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGAGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG TC GTCAG CGTGGGTG CGCGCA CGAAGCCGTCCGCCGGTGCGGATGGTTCGCAACGCCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGCACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGAAACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTTATTCGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTTTGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTCCAACa ] [-] EMBL BX466654 [ GTACCCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCATCATTTTCTACTCTCGCTGGGTTTATGCTTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGTGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG TC GTCAG CGTGGGTG CGCGCA CGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAATTTGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTAAAACCAAAAAAATCTAAAATAAAAAAGGCAGCATGTGC] [-] EMBL BX466786 [ TGGAGCGTGTTCGGTCAGCCGTGGGTGTCGCGCACCGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAATTTGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTAAAA CAAAAAAATCTATA CACAAAGGCAGC ] consensusID : consensus_7112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [AATNCGCCCGATGGTATAACGCACAGGCGCGCGACATCAACACGAACCGTGACACGCTGGTGAAAGCGATACGCGAGTGAGCGTGTAATAGAGCGTTGACTAATAGAATCAGCAGCATTNGTACCGTCGGGACCAGCAGTGTGTTTCCAAAGATGCTGCGCAAGTACCAGGACAGGCAGGGGCGTTCGCGTTTCGGACGGCATCATTTTCTAACTCTCGGCTGGGTTTATGTTTGCATTCTGCAACTTGTGCCTTGGCTGGCAGGGCTCTGGCGCAAACGCTACCTACGATTGTTACTACAAAGGAAAGTTCACGTTGGTTGAAAAGTATTGAACCCAGGAACTTGGGTGGCCCCCGTATTCCGTCCCAACGTGGTGGATTACCCCTATATTGGGTTGTGGATGCCGTGTTCTGGTCCAGACCGTTG] [+] EMBL AL932352 [AATNCGCCCGATGGTATAACGCACAGGCGCGCGACATCAACACGAACCGTGACACGCTGGTGAAAGCGATACGCGAGTGAGCGTGTAATAGAGCGTTGACTAATAGAATCAGCAGCATTNGTACCGTCGGGACCAGCAGTGTGTTTCCAAAGATGCTGCGCAAGTACCAGGACAGGCAGGGGCGTTCGCGTTTCGGACGGCATCATTTTCTAACTCTCGGCTGGGTTTATGTTTGCATTCTGCAACTTGTGCCTTGGCTGGCAGGGCTCTGGCGCAAACGCTACCTACGATTGTTACTACAAAGGAAAGTTCACGTTGGTTGAAAAGTATTGAACCCAGGAACTTGGGTGGCCCCCGTATTCCGTCCCAACGTGGTGGATTACCCCTATATTGGGTTGTGGATGCCGTGTTCTGGTCCAGACCGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7112#0 CCGCCGCCATCCCAGTGCCACCCAAGGTTTTGGGGGTGGAAGTGAGAGTTGTGCTTTTGC 60 consensus_7112#1 ------------------------------------------------------------ consensus_7112#0 TTCTGGCTTTCGGTGGCTGAGGTTGAACCGTTCGCGGTCAGTTGTAGTATTGCCCCGTGC 120 consensus_7112#1 ---------------------------------------------------AATNCGCCC 9 ** * consensus_7112#0 GAGGATAGAGAGCGCACAGGCGCGCGACAATCAACACGAACCGTGACACGCTGGTGAA-G 179 consensus_7112#1 GATGGTATA--ACGCACAGGCGCGCGACA-TCAACACGAACCGTGACACGCTGGTGAAAG 66 ** * ** * ***************** **************************** * consensus_7112#0 CGATACGCGAGTGAGCGTG-AATAGAGCGTTGACTAATAGAATCAGCAGCAT-GGTACCG 237 consensus_7112#1 CGATACGCGAGTGAGCGTGTAATAGAGCGTTGACTAATAGAATCAGCAGCATTNGTACCG 126 ******************* ******************************** ****** consensus_7112#0 TCGGGACCAGCAG-GTGTTTC-AAAGATGCTGC-CAAGTACCAGGACAGGCAGGG-CGTT 293 consensus_7112#1 TCGGGACCAGCAGTGTGTTTCCAAAGATGCTGCGCAAGTACCAGGACAGGCAGGGGCGTT 186 ************* ******* *********** ********************* **** consensus_7112#0 CGC-TTTCGGACGGCATCATTTTCTA-CTCTCG-CTGGGTTTATGTT-GCATTCTGCAAC 349 consensus_7112#1 CGCGTTTCGGACGGCATCATTTTCTAACTCTCGGCTGGGTTTATGTTTGCATTCTGCAAC 246 *** ********************** ****** ************* ************ consensus_7112#0 T-GTGCCT--GCTGGCAGG-CTCTGCC---AACGCTACCT-CGATG--TACTACAA--GA 397 consensus_7112#1 TTGTGCCTTGGCTGGCAGGGCTCTGGCGCAAACGCTACCTACGATTGTTACTACAAAGGA 306 * ****** ********* ***** * ********** **** ******** ** consensus_7112#0 AAGTTAGTGGTGAAAAGTATGAACCAGACT-GGGTGCCCGTATCGTCCACGGTGATACCT 456 consensus_7112#1 AAGTTCACGTTGGTTGAAAAGTATTGAACCCAGGAACTTGGGTGGCCCCCGTATTCCGTC 366 ***** * ** * * * ** ** * * * * ** ** consensus_7112#0 TTGGTGGAGCGTGTCGTCAGCGTGGGTGCGCGCACGAAGCCGTCCACCGGTGCGGATGGT 516 consensus_7112#1 CCAACGTGGTGGATTACCCCTATAT-TGGGTTGTGGATGCCGTGTTCTGGTCCAGACCGT 425 * * * * * * ** * ** ***** * *** * ** ** consensus_7112#0 TCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTAC 576 consensus_7112#1 TG---------------------------------------------------------- 427 * consensus_7112#0 GTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGC 636 consensus_7112#1 ------------------------------------------------------------ consensus_7112#0 ACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGA 696 consensus_7112#1 ------------------------------------------------------------ consensus_7112#0 CGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAA 756 consensus_7112#1 ------------------------------------------------------------ consensus_7112#0 GTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAAT 816 consensus_7112#1 ------------------------------------------------------------ consensus_7112#0 TTGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCC 876 consensus_7112#1 ------------------------------------------------------------ consensus_7112#0 CTCCTATGTGTACTAATAAAATTAAAACCAAAAAAATCTAAAATAAAAAAGGCAGCATGT 936 consensus_7112#1 ------------------------------------------------------------ consensus_7112#0 GC 938 consensus_7112#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||