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Anopheles gambiae
cluster # 7114 cluster # 7114       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7114#0 length = 1030 sequences # 5  
consensus_7114#1 length = 460 sequences # 1  

consensusID : consensus_7114#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1030
fasta sequence
                              [TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATATGAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGANAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTTGGAAGTTACAAATAAGCAAATAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATACATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGACATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATAATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGATGATAATAATAATTAA]

[+] EMBL BX624660             [TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTCCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGCGCTTCCTCTCCCCTTCCTCCCTTCTACTTTCATAGGGCGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATATGAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACAAGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACTCGCGCGCGCGCGCGCACGANAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTT                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX614098             [                          AGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTA    TGTGTGTGTGTGTGTATATATGGGGGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCA  CGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX613212             [                                                   TCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTA    TGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCA  CGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAAAAATGCTTAACATATGCATATGAAAAAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGC                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX614097             [                                                                                       cCGCTATTGTTCTTATTATATATTACAATCGCGTTCTTTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGGGCATTGCGCGAATGCGCGCGTGTTACCCGGCGGGATTGGGTCTGTATGTGTGTGTG   G GTGTATATATGGGGGTGTTTAAGGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAAGGTTTTAAAGCGGCAGGGGATTTCCTTTCTGCTGCACGCGCG G GCGCGCACTTCCTCTACCCTTCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AGA280325            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TATAAGACACGACCTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGAGAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTAACAATTTGTATGGTTGTGCTGTATAAAATACCACTTGGAAGTTACAAATAAGCAAATAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATACATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGACATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATAATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGATGATAATAATAATTAA]


>consensus_7114#0 TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCA TTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCG TTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCG CGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTATA TATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTC TTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGCACTTC CTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACAC CCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTC TCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATATGAAAT AATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACACGTA CTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGANAAGG GAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTTA CAATTTGTATGGGTTTGCTGNATAAAATACCACTTGGAAGTTACAAATAAGCAAATAAAA CAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATACATAT ATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGACATTAA ATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATAATAAT CGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGATGATAA TAATAATTAA



consensusID : consensus_7114#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence
                              [CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTCGCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGATCGTTCTATGCTTTACGATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTACGTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATCAATGCGTTTCCCTTCGTTATGCTGCTTTGATAGCAAAAAGAACGATGCTGTTGCACGCGG]

[-] EMBL BM587364             [CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTCGCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGATCGTTCTATGCTTTACGATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTACGTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATCAATGCGTTTCCCTTCGTTATGCTGCTTTGATAGCAAAAAGAACGATGCTGTTGCACGCGG]


>consensus_7114#1 CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTT TCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACG AGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGGATGCGCGCGTGTTA CGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTCGCTGCTTGGACAGGCAC AGCAAGCGTTTCAGCAATCGCTGATCGTTCTATGCTTTACGATGGCTTAGCTCCAAGTAG TTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTACGTTCGTAATGTTGTTCTTCT CGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATCAATGCGTTTCCCTTCGTTAT GCTGCTTTGATAGCAAAAAGAACGATGCTGTTGCACGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7114#0      TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCA 60
consensus_7114#1      -----------------CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCA 43
                                       *******************************************

consensus_7114#0      TTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCG 120
consensus_7114#1      TTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCG 103
                      ************************************************************

consensus_7114#0      TTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCG 180
consensus_7114#1      TTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCG 163
                      **************** *******************************************

consensus_7114#0      CGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTAT- 239
consensus_7114#1      CGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTC 223
                      ** ************************************************* ** * * 

consensus_7114#0      ---ATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCC 296
consensus_7114#1      GCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGA---TCGTTCTATGCTTTAC 280
                            ***    *   *       ** **      *** *   ** *** ** **** *

consensus_7114#0      TCTCTTAATGTTTTAAAGCGTCA-TGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGC 355
consensus_7114#1      GATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTAC 340
                        *      * *  **   **         *  *    ******* *   *    **  *

consensus_7114#0      ACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGG 415
consensus_7114#1      GTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATC 400
                        *     *    *** ** *  *    *       ** ** **  *  ** *  *    

consensus_7114#0      CACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCA 475
consensus_7114#1      AATGCGTTTCCCTTC--GTTATGCTGCTT--TGATAGCAAAAAGA-ACGATGCTGTTGCA 455
                       *  *     *****  * *  ** * *   *   *  * * * * **     **** **

consensus_7114#0      TGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATAT 535
consensus_7114#1      CGCGG------------------------------------------------------- 460
                       **                                                         

consensus_7114#0      GAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGAC 595
consensus_7114#1      ------------------------------------------------------------
                                                                                  

consensus_7114#0      ACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGA 655
consensus_7114#1      ------------------------------------------------------------
                                                                                  

consensus_7114#0      NAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTT 715
consensus_7114#1      ------------------------------------------------------------
                                                                                  

consensus_7114#0      TGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTTGGAAGTTACAAATAAGCAAA 775
consensus_7114#1      ------------------------------------------------------------
                                                                                  

consensus_7114#0      TAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATA 835
consensus_7114#1      ------------------------------------------------------------
                                                                                  

consensus_7114#0      CATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGAC 895
consensus_7114#1      ------------------------------------------------------------
                                                                                  

consensus_7114#0      ATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATA 955
consensus_7114#1      ------------------------------------------------------------
                                                                                  

consensus_7114#0      ATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGAT 1015
consensus_7114#1      ------------------------------------------------------------
                                                                                  

consensus_7114#0      GATAATAATAATTAA 1030
consensus_7114#1      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)