These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence [TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATATGAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGANAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTTGGAAGTTACAAATAAGCAAATAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATACATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGACATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATAATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGATGATAATAATAATTAA] [+] EMBL BX624660 [TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTCCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGCGCTTCCTCTCCCCTTCCTCCCTTCTACTTTCATAGGGCGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATATGAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACAAGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACTCGCGCGCGCGCGCGCACGANAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTT ] [+] EMBL BX614098 [ AGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTA TGTGTGTGTGTGTGTATATATGGGGGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCA CGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGAT ] [+] EMBL BX613212 [ TCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTA TGTGTGTGTGTGTGTATATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAATGTTTTAAAGCGTCATGGGATTTCCTTTCTGCTGCA CGCGCGCGCGCGCACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGGCACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCATGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAAAAATGCTTAACATATGCATATGAAAAAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGACACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGC ] [+] EMBL BX614097 [ cCGCTATTGTTCTTATTATATATTACAATCGCGTTCTTTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGGGCATTGCGCGAATGCGCGCGTGTTACCCGGCGGGATTGGGTCTGTATGTGTGTGTG G GTGTATATATGGGGGTGTTTAAGGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCCTCTCTTAAGGTTTTAAAGCGGCAGGGGATTTCCTTTCTGCTGCACGCGCG G GCGCGCACTTCCTCTACCCTTCCTC ] [-] EMBL AGA280325 [ TATAAGACACGACCTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGAGAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTTTGTAACAATTTGTATGGTTGTGCTGTATAAAATACCACTTGGAAGTTACAAATAAGCAAATAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATACATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGACATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATAATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGATGATAATAATAATTAA] consensusID : consensus_7114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTCGCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGATCGTTCTATGCTTTACGATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTACGTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATCAATGCGTTTCCCTTCGTTATGCTGCTTTGATAGCAAAAAGAACGATGCTGTTGCACGCGG] [-] EMBL BM587364 [CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCATTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCGTTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCGCGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTCGCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGATCGTTCTATGCTTTACGATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTACGTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATCAATGCGTTTCCCTTCGTTATGCTGCTTTGATAGCAAAAAGAACGATGCTGTTGCACGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7114#0 TTTCGATTGTTATGATTCGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCA 60 consensus_7114#1 -----------------CGATTTGTTAGCTAAATAATTTATTTTCTCTTTCTCTTTCTCA 43 ******************************************* consensus_7114#0 TTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCG 120 consensus_7114#1 TTCTCTCTTTCTCTTTTTCTCATTCTCTCGCTATTGTTCTTATTATATATTACAATCGCG 103 ************************************************************ consensus_7114#0 TTCATTACCTTCCAACAAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCG 180 consensus_7114#1 TTCATTACCTTCCAACGAGCAACGAAGCGCTTCACCCTAGCCGACCTTAGGCGCATTGCG 163 **************** ******************************************* consensus_7114#0 CGAATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGTGTGTAT- 239 consensus_7114#1 CGGATGCGCGCGTGTTACGCGGCGGGATTGTGTCTGTATGTGTGTGTGTGTGAGTTTGTC 223 ** ************************************************* ** * * consensus_7114#0 ---ATATGGGTGTGTTTAATGCTTTTTACAAGTTATGCTAAGGCTCCTTCGATCCTTTCC 296 consensus_7114#1 GCTGCTTGGACAGGCACAGCAAGCGTTTCAGCAATCGCTGA---TCGTTCTATGCTTTAC 280 *** * * ** ** *** * ** *** ** **** * consensus_7114#0 TCTCTTAATGTTTTAAAGCGTCA-TGGGATTTCCTTTCTGCTGCACGCGCGCGCGCGCGC 355 consensus_7114#1 GATGGCTTAGCTCCAAGTAGTTGGCACCGGTATCGGGATGCTGCAAGGATGGCGCCGTAC 340 * * * ** ** * * ******* * * ** * consensus_7114#0 ACTTCCTCTACCCTTCCTCCCTTCTACTTTCATAGGACGTTTGTGTGCGGTTTTTTGGGG 415 consensus_7114#1 GTTCGTAATGTTGTTCTTCTCGCCCTGCTCGTCGATACTTTCGTTCGTCGTCTGCTTATC 400 * * *** ** * * * ** ** ** * ** * * consensus_7114#0 CACACCCGATCCTTCCAGCTTAGCCGATACATACAAATACATATACACATCCTTGTTTCA 475 consensus_7114#1 AATGCGTTTCCCTTC--GTTATGCTGCTT--TGATAGCAAAAAGA-ACGATGCTGTTGCA 455 * * ***** * * ** * * * * * * * * ** **** ** consensus_7114#0 TGCTCTCCTCACTACATGCACAAATAGGTCGACAGGCAGAAATGNNTAACATATGCATAT 535 consensus_7114#1 CGCGG------------------------------------------------------- 460 ** consensus_7114#0 GAAATAATAACTTTAATATGCTTCCTCTGCTTAATCGTATATAAACATATAGTATAAGAC 595 consensus_7114#1 ------------------------------------------------------------ consensus_7114#0 ACGTACTATCTCTCCTGTTCGTGCCACACACACTTTACACACGCGCGCGCGCGCGCACGA 655 consensus_7114#1 ------------------------------------------------------------ consensus_7114#0 NAAGGGAAAAGGGTGAAGCGCACCTATACACGCGTTCTTTCCCAAAAGCCATTACGCTTT 715 consensus_7114#1 ------------------------------------------------------------ consensus_7114#0 TGTTACAATTTGTATGGGTTTGCTGNATAAAATACCACTTGGAAGTTACAAATAAGCAAA 775 consensus_7114#1 ------------------------------------------------------------ consensus_7114#0 TAAAACAACAACTATCCAACAACAGCCGCAACCCGCAGCGTTTCCAGTTCGCATGACATA 835 consensus_7114#1 ------------------------------------------------------------ consensus_7114#0 CATATATGTGTTTGTGTGTGTGTTTATATATATATATATAAGGATCAACGATTTATTGAC 895 consensus_7114#1 ------------------------------------------------------------ consensus_7114#0 ATTAAATGATCGAAGATTGGCTTCTGTTTCGAGATTAAAATAATAATAATAATAATAATA 955 consensus_7114#1 ------------------------------------------------------------ consensus_7114#0 ATAATCGTAATAATATAATAATATTAATATTAATAATAGTGATCCCAAAATAATAATGAT 1015 consensus_7114#1 ------------------------------------------------------------ consensus_7114#0 GATAATAATAATTAA 1030 consensus_7114#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||