These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 822 fasta sequence [CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACACGAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATGCGCGAACGGGGCG] [+] EMBL BM625863 [CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGAC ] [+] EMBL BM575409 [ ccgCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGAGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTT AAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCTGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGA ] [+] EMBL BM640680 [ GCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCG ] [+] EMBL BM645627 [ CCGCAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACACGAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATGCGCGAACGGGGCG] consensusID : consensus_7125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTTTGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATCGTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCTGGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGTATTTCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGCGGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTNGCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGTGGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAGTTGGGGNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCCCAATAGGGGACCACCCNGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGCCCCCCTTTGGGGTTTAATCCAATTATTGAGCCATTATGTCCTTANGGGAAAGATTCCGACCGTTTAAAAACCCGG] [+] EMBL AL932854 [TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTTTGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATCGTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCTGGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGTATTTCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGCGGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTNGCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGTGGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAGTTGGGGNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCCCAATAGGGGACCACCCNGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGCCCCCCTTTGGGGTTTAATCCAATTATTGAGCCATTATGTCCTTANGGGAAAGATTCCGACCGTTTAAAAACCCGG] consensusID : consensus_7125#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [AGGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGACTCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGACCGACTGG] [+] EMBL BX469169 [AGGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGACTCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGACCGACTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7125#0 CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCG 60 consensus_7125#2 ------------------------------------------------------------ consensus_7125#1 ------------------------TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTT 36 consensus_7125#0 CGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTA 120 consensus_7125#2 ------------------------------------------------------------ consensus_7125#1 TGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATC 96 consensus_7125#0 ACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTC 180 consensus_7125#2 ------------------------------------------------------------ consensus_7125#1 GTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCT 156 consensus_7125#0 GTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACA 240 consensus_7125#2 -----------------------------------------------------------A 1 consensus_7125#1 GGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGT--ATT 214 consensus_7125#0 CACACTAATTGTTAAAAAA---AAACAC-TTGCCCAGCCACAAGCG-GGTGAATCTTCTC 295 consensus_7125#2 GGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTC 61 consensus_7125#1 TCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGC 274 * * * ***** ** *** * ** * * consensus_7125#0 GGGCTCGACAGGGAAAAAGC-AGTGT-------TTTGGCTTAAAAATGGTATTAATAGCA 347 consensus_7125#2 GGGCTCGACAGGGAAAAAGC-AGTGT-------TTTGGCTTAAAAATGGTATTAATAGCA 113 consensus_7125#1 GGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTN 334 ** * * * * *** * *** * ** *** * * **** ** * consensus_7125#0 GCCGCC-----GTGTGTACGAAGGCAGGGAAAACGA-TCGTTT---CCCGGCAGTTTGTC 398 consensus_7125#2 GCCGCC-----GTGTGTACGAAGGCAGGGAAAACGACTCGTTT---CCCGGCAGTTTGTC 165 consensus_7125#1 GCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGT 394 *** ** * **** * * * * ** * * * *** * * consensus_7125#0 GAGATGACGAAGGCA-CGCAT-CGAAGGTTTGCTAGC-CGCGTTTCCAAAGCTAATGACC 455 consensus_7125#2 GAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGC-CGCGTTTCCAAAGCTAATGACC 224 consensus_7125#1 GGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAG 454 * * * ** ** * ** * ** ** * * * * consensus_7125#0 TCGGGCAAACAGCACACTTTCGTCG-AGACGGACTCGG-TGCG-CTACG-TGTACCAGCC 511 consensus_7125#2 TCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGAC 284 consensus_7125#1 TTGGG-GNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCC-CAATAGGGGACCACCC 512 * *** * * * * * * * * * * * * **** * consensus_7125#0 --GCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGAT 569 consensus_7125#2 CGACTGG----------------------------------------------------- 291 consensus_7125#1 NGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGC 572 * consensus_7125#0 CTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAG 629 consensus_7125#2 ------------------------------------------------------------ consensus_7125#1 CCC---------CCTTTGGGGTTTAATCCAATTATTGAG--CCATTATGTCCTTANGGGA 621 consensus_7125#0 AAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTC 689 consensus_7125#2 ------------------------------------------------------------ consensus_7125#1 AAGATTCCGACCGTTTAAAAACCCGG---------------------------------- 647 consensus_7125#0 GGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACAC 749 consensus_7125#2 ------------------------------------------------------------ consensus_7125#1 ------------------------------------------------------------ consensus_7125#0 GAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATG 809 consensus_7125#2 ------------------------------------------------------------ consensus_7125#1 ------------------------------------------------------------ consensus_7125#0 CGCGAACGGGGCG 822 consensus_7125#2 ------------- consensus_7125#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||