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Anopheles gambiae
cluster # 7125 cluster # 7125       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7125#0 length = 822 sequences # 4  
consensus_7125#1 length = 647 sequences # 1  
consensus_7125#2 length = 291 sequences # 1  

consensusID : consensus_7125#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 822
fasta sequence
                              [CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACACGAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATGCGCGAACGGGGCG]

[+] EMBL BM625863             [CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGAC                                                                                                                                                    ]
[+] EMBL BM575409             [           ccgCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGAGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTT AAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCTGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGA                                                                                                                        ]
[+] EMBL BM640680             [                      GCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCGCGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTAACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTCGTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACACACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCG                                                                                                                           ]
[+] EMBL BM645627             [                                                                                                                                                                                                                                                                                 CCGCAAGCGGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGAGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACACGAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATGCGCGAACGGGGCG]


>consensus_7125#0 CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCG CGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTA ACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTC GTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACA CACACTAATTGTTAAAAAAAAACACTTGCCCAGCCACAAGCGGGTGAATCTTCTCGGGCT CGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTA CGAAGGCAGGGAAAACGATCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCACGCATCG AAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCG AGACGGACTCGGTGCGCTACGTGTACCAGCCGCTGGAGAAGCTGTACATGCTGCTGATCA CTACGAAGGCGAGCAACATCCTGGAGGATCTGGAAACGCTGCGCCTCTTCTCGAAGGTAA TTCCCGAGTACTGCCGCACGCTCGAGGAGAAGGAAATCATCGAGAACGCGTTCGATTTGA TCTTTGCGTTCGACGAGATTGTGGCGCTCGGGTACCGCGAGAGCGTCAATCTGGCCCAGA TCAAAACGTTCGTCGAAATGGATTCACACGAGGAGAAGGTGTACCAGGCAGTGCGCCAGA CGCAGGAACGTGAGGCGAAGCAGAAGATGCGCGAACGGGGCG



consensusID : consensus_7125#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence
                              [TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTTTGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATCGTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCTGGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGTATTTCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGCGGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTNGCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGTGGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAGTTGGGGNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCCCAATAGGGGACCACCCNGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGCCCCCCTTTGGGGTTTAATCCAATTATTGAGCCATTATGTCCTTANGGGAAAGATTCCGACCGTTTAAAAACCCGG]

[+] EMBL AL932854             [TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTTTGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATCGTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCTGGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGTATTTCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGCGGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTNGCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGTGGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAGTTGGGGNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCCCAATAGGGGACCACCCNGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGCCCCCCTTTGGGGTTTAATCCAATTATTGAGCCATTATGTCCTTANGGGAAAGATTCCGACCGTTTAAAAACCCGG]


>consensus_7125#1 TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTTTGGCTTAAAATGGTATTAATAGCA GCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATCGTTTCCCGGCCAAGCTTTGGTTCC GCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCTGGGCCAAANTTTCCGGAAAGGCTA TATTGCCTTAAAGGAGCACCTTGGGCCGGGTATTTCCCATAGAAGGCCTTAAACTTGAAC ACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGCGGTCCCCAAAACCNAAACCCGAGTTT CATTATATTNTGCTATNAGANNGTATATATCGTNGCCCCCCACAAGGGTGTGGACNCACG CGCAGACCGGTTTTTATANACCCCCCCCCAGGGTGGGGGCNCAAAAACAGGGTGAGGAAA AACCCGGGAGGGCGAAACCCTTCCCCGGACGGAGTTGGGGNGCCNCNGNCCCTTACCATG ATTAGGTTTAGACNCCCAATAGGGGACCACCCNGGCCCTTTGGTCGGAGAACGGCAGAAA CAAAACTAGACANAAAAGCTCGCGCGGGGNGCCCCCCTTTGGGGTTTAATCCAATTATTG AGCCATTATGTCCTTANGGGAAAGATTCCGACCGTTTAAAAACCCGG



consensusID : consensus_7125#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence
                              [AGGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGACTCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGACCGACTGG]

[+] EMBL BX469169             [AGGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTCGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCGTGTGTACGAAGGCAGGGAAAACGACTCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGACCGACTGG]


>consensus_7125#2 AGGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCT CGGGCTCGACAGGGAAAAAGCAGTGTTTTGGCTTAAAAATGGTATTAATAGCAGCCGCCG TGTGTACGAAGGCAGGGAAAACGACTCGTTTCCCGGCAGTTTGTCGAGATGACGAAGGCA GCGCATACGAAGGTTTGCTAGCCGCGTTTCCAAAGCTAATGACCTCGGGCAAACAGCACA CTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGACCGACTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7125#0      CCGGTTCTGCGGGCCGATCCTTGCATTTTGTTGATCCCGGAATAAATCCAATCACGTCCG 60
consensus_7125#2      ------------------------------------------------------------
consensus_7125#1      ------------------------TCCCCGAGGTTAACTCACAGGGAAAAAGCAGTGTTT 36
                                                                                  

consensus_7125#0      CGAATAAAATCACTTCGACAAATCGTGCCCGGTAGATGATGGTTCGGCTGTGAAGTGCTA 120
consensus_7125#2      ------------------------------------------------------------
consensus_7125#1      TGGCTTAAAATGGTATTAATAGCAGCCCGCCGTGTGTACGAAGTGCAGGGGAAAACGATC 96
                                                                                  

consensus_7125#0      ACTCGGTGGAATTGCGTTATTTTGTGCCGGGGACGGGTTGTAGGAATCGCTGCAAATTTC 180
consensus_7125#2      ------------------------------------------------------------
consensus_7125#1      GTTTCCCGGCCAAGCTTTGGTTCCGCACGGAGCTTGGAAGCCGCAACACTAGGGGCACCT 156
                                                                                  

consensus_7125#0      GTATCCCGTTCAGTGGGGAGGAGCGCACGTCACTAGCTCACACGTCAGCCGGAATTCACA 240
consensus_7125#2      -----------------------------------------------------------A 1
consensus_7125#1      GGGCCAAANTTTCCGGAAAGGCTATATTGCCTTAAAGGAGCACCTTGGGCCGGGT--ATT 214
                                                                                  

consensus_7125#0      CACACTAATTGTTAAAAAA---AAACAC-TTGCCCAGCCACAAGCG-GGTGAATCTTCTC 295
consensus_7125#2      GGCAGNAATCNGCNACGAGTGTAAACACGTTGCCCAGCCACAAGCGCGGTGAATCTTCTC 61
consensus_7125#1      TCCCATAGAAGGCCTTAAACTTGAACACTCGGCGGGGCCCAAGAAAAAACCAAGGGGCGC 274
                        *   *          *     *****   **   ***  *         **    * *

consensus_7125#0      GGGCTCGACAGGGAAAAAGC-AGTGT-------TTTGGCTTAAAAATGGTATTAATAGCA 347
consensus_7125#2      GGGCTCGACAGGGAAAAAGC-AGTGT-------TTTGGCTTAAAAATGGTATTAATAGCA 113
consensus_7125#1      GGTCCCCAAAACCNAAACCCGAGTTTCATTATATTNTGCTATNAGANNGTATATATCGTN 334
                      ** * * * *    ***  * *** *       **  ***   * *  ****  ** *  

consensus_7125#0      GCCGCC-----GTGTGTACGAAGGCAGGGAAAACGA-TCGTTT---CCCGGCAGTTTGTC 398
consensus_7125#2      GCCGCC-----GTGTGTACGAAGGCAGGGAAAACGACTCGTTT---CCCGGCAGTTTGTC 165
consensus_7125#1      GCCCCCCACAAGGGTGTGGACNCACGCGCAGACCGGTTTTTATANACCCCCCCCCAGGGT 394
                      *** **     * ****       *  * * * **  *  * *   ***  *     *  

consensus_7125#0      GAGATGACGAAGGCA-CGCAT-CGAAGGTTTGCTAGC-CGCGTTTCCAAAGCTAATGACC 455
consensus_7125#2      GAGATGACGAAGGCAGCGCATACGAAGGTTTGCTAGC-CGCGTTTCCAAAGCTAATGACC 224
consensus_7125#1      GGGGGCNCAAAAACAGGGTGAGGAAAAACCCGGGAGGGCGAAACCCTTCCCCGGACGGAG 454
                      * *    * **  **  *      **     *  **  **     *     *  * *   

consensus_7125#0      TCGGGCAAACAGCACACTTTCGTCG-AGACGGACTCGG-TGCG-CTACG-TGTACCAGCC 511
consensus_7125#2      TCGGGCAAACAGCACACTTTCGTCGCAGACGGACTCGGGTGCGGCTACGGTGTACCAGAC 284
consensus_7125#1      TTGGG-GNGCCNCNGNCCCTTACCATGATTAGGTTTAGACNCC-CAATAGGGGACCACCC 512
                      * ***    *  *   *  *   *       *  *  *   *  * *    * ****  *

consensus_7125#0      --GCTGGAGAAGCTGTACATGCTGCTGATCACTACGAAGGCGAGCAACATCCTGGAGGAT 569
consensus_7125#2      CGACTGG----------------------------------------------------- 291
consensus_7125#1      NGGCCCTTTGGTCGGAGAACGGCAGAAACAAAACTAGACANAAAAGCTCGCGCGGGGNGC 572
                         *                                                        

consensus_7125#0      CTGGAAACGCTGCGCCTCTTCTCGAAGGTAATTCCCGAGTACTGCCGCACGCTCGAGGAG 629
consensus_7125#2      ------------------------------------------------------------
consensus_7125#1      CCC---------CCTTTGGGGTTTAATCCAATTATTGAG--CCATTATGTCCTTANGGGA 621
                                                                                  

consensus_7125#0      AAGGAAATCATCGAGAACGCGTTCGATTTGATCTTTGCGTTCGACGAGATTGTGGCGCTC 689
consensus_7125#2      ------------------------------------------------------------
consensus_7125#1      AAGATTCCGACCGTTTAAAAACCCGG---------------------------------- 647
                                                                                  

consensus_7125#0      GGGTACCGCGAGAGCGTCAATCTGGCCCAGATCAAAACGTTCGTCGAAATGGATTCACAC 749
consensus_7125#2      ------------------------------------------------------------
consensus_7125#1      ------------------------------------------------------------
                                                                                  

consensus_7125#0      GAGGAGAAGGTGTACCAGGCAGTGCGCCAGACGCAGGAACGTGAGGCGAAGCAGAAGATG 809
consensus_7125#2      ------------------------------------------------------------
consensus_7125#1      ------------------------------------------------------------
                                                                                  

consensus_7125#0      CGCGAACGGGGCG 822
consensus_7125#2      -------------
consensus_7125#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)