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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7129#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1430 fasta sequence
[ACCGGCAGAATGCGAAGTTTATGCGGCTGGCCGAAGCGGTCAAGGAGTCGTTCGTGTACATCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCAACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGCTCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCCTGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCAGTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGCCCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATCTGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACTTCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATAACGTGGTGAACAAGCGGGCGGAACCGGGTGCATCAGTTGTACTGCCCTTTGGCATCGGGCGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAGATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTACTATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCTACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAATAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGCAACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCCTATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAGACCCGAGTAATCGACGCGAACTGCGCGAGCTTGCTTTTACGTCAGGTCATTAGCGTACCGCCATCATGCGTTGATACAGCGAAGGGATGGGAAGGGTTGGCTCGTTTTGTGCGACCGAAGATACACTCTTTATTACGTATACAGCTCCAGATCTACAAATTTACCAGTTAT]
[+] EMBL BX625729 [ACCGGCAGAATGCGAAGTTTATGCGGCTGGCCGAAGCGGTCAAGGAGTCGTTCGTGTACATCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCAACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGCTCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCCTGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCAGTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGCCCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATCTGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACTTCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATAACGTGGTGAACAAGCGGGCGGAACCGGGTGCATCAGTTGTACTGCCCTTTGGCATCGGGCG ]
[+] EMBL BX605173 [ AGGAGTCGTTCGTTTACATCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCAACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGCTCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCCTGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCAGTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCTGGTT ]
[+] EMBL BM591693 [ ccgCATCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCAACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGCTCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCCTGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCAGTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGCCCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATCTGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACTTCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATAACGTGGTGAACAAGCGGGCGGAACCGGGTGCATCAGTTGTACTGCCCTTTGGCAT ]
[+] EMBL BX615628 [ TATCCAACTTTCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGGTGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACGAGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGCCCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATCTGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACTTCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATAACGTGGTGAACAAGCGGGCGGAACCGGGTGCATCAGTTGTACTGCCCTTTGGCATCGGGCGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAGATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACA ]
[+] EMBL BX621623 [ AAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTACTATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCTACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAATAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGCAACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCCTATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAGACCCGAGTAATCGACGCGAACTGCGCGAGCTTGCTTTTACGTCAGGTCATTAGCGTACCGCCATCATGCGTTGATACAGCGAAGGGATGGGAAGGGTTGGCTCGTTTTGTGCGACCGAAGATACACTCTTTATTACGTATACAGCTCCAGATCTACAAATTTACCAGTTAT]
consensusID : consensus_7129#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[GCAGAATCGCCACGAGNNAGTTGTACTGCCCTTTGGCATCNGGCGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAGATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTACTATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCTACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAATAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGCAACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCCTATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAGACCCAGAGTTAATTCGACGCGAAACTGCGCGAAGCTTGCGTTTAAACGGTTCAGGTCATTCAGCGGTAACCGCATCATGCCGTTGGAATACAAGCGGAAGGGATGGGAANGGTTGGNCTACGAT]
[+] EMBL BX467316 [GCAGAATCGCCACGAGNNAGTTGTACTGCCCTTTGGCATCNGGCGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAGATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTGCTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCTCTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTACTATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCTACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAATAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGCAACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCCTATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAGACCCAGAGTTAATTCGACGCGAAACTGCGCGAAGCTTGCGTTTAAACGGTTCAGGTCATTCAGCGGTAACCGCATCATGCCGTTGGAATACAAGCGGAAGGGATGGGAANGGTTGGNCTACGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7129#0 ACCGGCAGAATGCGAAGTTTATGCGGCTGGCCGAAGCGGTCAAGGAGTCGTTCGTGTACA 60
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 TCGGCGAGAGCTACTTCGGGCTGAAGCTGTGGAAGTACGTGCCGACGCGGCTCTACAGCA 120
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 ACTTTGTCCGGTGTGAGGAGATCATCTACGAAACGATCGCGGAAATCGTTTATGAGGCGC 180
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 TCGAGGAAGAGCAGCTCAACTGTCCCGATAACGATGTGAAGCACATCTTTATCAGCATCC 240
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 TGCAGACCGAGGGGCTGGATACGAAGGAAAAGATATCCGGCATCATTGACCTCATCACCA 300
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 GTGCCATAGAAACGCTATCCAACACGCTCTCGTTCCTGCTGCACAACCTCAGCCAGACGG 360
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 TGGAGTATCAGCGCGAGATTGCGCATGAGTTCGCCCACTGTGTGCAGCACATCACGAACG 420
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 AGGATCTGGTGAGCGCCCGGTTCACCAAGGCCTGCATCCAGGAGTCGTACCGCATCTCGC 480
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 CCACGACGCCCTGCTTGGCGCGCATCCTCGAGGAAGACTTCCAGCTGTCCGGGTACCATC 540
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 TGCAGGCGGGAACACTCGTACTGTGCCATACGCGAGTTGCCTGCCTGAGTGAGGACAACT 600
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 TCCAGCAGGCGGATCGCTTCCTGCCGGACCGTTGGCTCGAGCAGCGGGACGAGAACGATA 660
consensus_7129#1 ------------------------------------------------------------
consensus_7129#0 ACGTGGTGAACAAGCGGGCGGAACCGG-GTGCATCAGTTGTACTGCCCTTTGGCATCGGG 719
consensus_7129#1 -----------------GCAGAATCGCCACGAGNNAGTTGTACTGCCCTTTGGCATCNGG 43
** *** ** * ********************** **
consensus_7129#0 CGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAG 779
consensus_7129#1 CGGCGTATGTGCCCCGGTCAGAAGGTGATCGACATCGAGCTGACGCTCCTGGTGGCAAAG 103
************************************************************
consensus_7129#0 ATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTG 839
consensus_7129#1 ATATTCCAAAACTTTGAAATCGAGTACCGCAGCCCGCTCGATACACAGTTCCAGTTCCTG 163
************************************************************
consensus_7129#0 CTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCT 899
consensus_7129#1 CTAGCACCGCGCACACCGATCGAGATTCGATTCCGGGATCGGACGTAGTGGCGTTCCCCT 223
************************************************************
consensus_7129#0 CTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTAC 959
consensus_7129#1 CTACCCCGGGGACACTTCTGTTCCGTTCGCAACTACCTCGTACTATACAAGTTCCGGTAC 283
************************************************************
consensus_7129#0 TATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCT 1019
consensus_7129#1 TATTAGGAAGCGGGTGATGCTGCTTAGTAGATTTGCAGAAAGCGGGACGTACACCCGGCT 343
************************************************************
consensus_7129#0 ACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAA 1079
consensus_7129#1 ACGCCCGTTAAGAATCATATTGATTAGATCGCGCTGCGCGATCAGCAGAACTACCTTGAA 403
************************************************************
consensus_7129#0 TAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGC 1139
consensus_7129#1 TAGAGAACTGATATATTAATATGAATTCCTAGTGTAGAGTAGTAGCAGGCAAACCCTAGC 463
************************************************************
consensus_7129#0 AACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCC 1199
consensus_7129#1 AACCGGTCAGGATCCACGATCACACTATAAAACTGACTGTACTGTAGAGACTGTGTAGCC 523
************************************************************
consensus_7129#0 TATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAG 1259
consensus_7129#1 TATTACTGTTGTGGCCTGTGAATCGCTCTAGTAAGGGGAAAGGCTATTAGAAAGGCTTAG 583
************************************************************
consensus_7129#0 ACCC-GAGTAA--TCGACGCGAA-CTGCGCGA-GCTTGCTTTTACG----TCAGGTCATT 1310
consensus_7129#1 ACCCAGAGTTAATTCGACGCGAAACTGCGCGAAGCTTGCGTTTAAACGGTTCAGGTCATT 643
**** **** * ********** ******** ****** **** **********
consensus_7129#0 -AGCG-TACCGCCATCATGC-GTTG--ATACAGC--GAAGGGATGGGAAGGGTTGGCTCG 1363
consensus_7129#1 CAGCGGTAACCGCATCATGCCGTTGGAATACAAGCGGAAGGGATGGGAANGGTTGGNCTA 703
**** ** * ******** **** ***** ************* ******
consensus_7129#0 TTTTGTGCGACCGAAGATACACTCTTTATTACGTATACAGCTCCAGATCTACAAATTTAC 1423
consensus_7129#1 CGAT-------------------------------------------------------- 707
*
consensus_7129#0 CAGTTAT 1430
consensus_7129#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||