These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 970 fasta sequence [CCGCGGACGCGTGGGCAGCGAGGGACAGAAGTCGATTTCCCGGCCTTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAACGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAGGACCGACCGACCGAGCGAGCGAGC---TTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACT----AACAGACTAAACGGAGAAACACACACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTACGTGTGTGCGTGTGCACGTACCGAAGAAGCAAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGTTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGG] [+] EMBL BM596596 [CCGCGGACGCGTGGGCAGCGAGGGACAGAAGTCGACTTCCCGGCCTTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACAGTGGAGCTCGTGAAGAACGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCTAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAGGACCGACCGACCGAGCGAGCGAGCGAGCTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGA ] [+] EMBL CNS09NPY [ caCAGCGAGGGACAGAAGTCGATTTCCCGGCCTTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAGCAGCATCTCGCCCACGGTGGAGCTCGTGAAGAACGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAGGACCGACCGACCGAGCGAGCGAGC TTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACT AACAGACTAAACGGAGAAACACACACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTACGTGTGTGCGTGTGCACGTACCGAAGAAGCAAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGTTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTC AAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGG] [+] EMBL CNS09JRO [ ACAGAAGTCGATTTCCCGGCCTTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAACGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAGGACCGACCGACCGAGCGAGCGAGC TTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACT AACAGACTAAACGGAGAAACACACACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTACGTGTGTGCGTGTGCACGTACCGAAGAAGCAAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGTTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCc ] [+] EMBL CNS09F0V [ CCGGCC TTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAATGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGA TGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAG GACCGACCGAGCGAGCGAGC TTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGAAACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTTACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTTCGTGTGTGCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGGTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAGGCCACAT ] consensusID : consensus_7135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGCCCACGCGTCCGACCGGTCGACCTAGATTAGGCTACACAAGCTTCATAATACGAAACCCCACAAACGCTACACAAAATGTATCATAAACGTACAAAAAGGTTTTATTTTCACTCCTGTTTTCTGCTTCGTTGTCTTTCCCTCGATAGTTTGCTAAATTCTACAATTATAATTCTACATTTCCCGCTGGTTGAAACAACGCTTCAAGCCAGAGGATTAACAAACAATTCAGAGGTAACGGAACCCTAACTTCCAACCCCCCTTTTTGCTTAGCAAGAAGGGTAACGTGTTTACACACACATAGTGGGCGCATCAGAATGCTTTCATGGACGTATTATTGGCGGATCGTATCCCTCGCTCCCGGAGGATCTATCTCACAAGATGGCGAGAAACCACGTACCGATCGCTGTATATTCGCAGCATCGGAAGACATGGAATCGATGCGGAACCATGAGCAGATCTTTATGCGGCTTATGCGTCGATACAAGTATCTCGAGAAAATGTTTGAAGAGGAGATGAAGAAAATTCTCATCTTCATCAAGGGTGTTACTCCACTCGAAAGGATCAAGCTCGCTCGCATGACGGCTCTATGGATGGCCAATGGTTCCATTCCGCCGCAAGTGTTGAGCGTACTGGACCATGAACACCTGACG] [+] EMBL BM590467 [CCGCCCACGCGTCCGACCGGTCGACCTAGATTAGGCTACACAAGCTTCATAATACGAAACCCCACAAACGCTACACAAAATGTATCATAAACGTACAAAAAGGTTTTATTTTCACTCCTGTTTTCTGCTTCGTTGTCTTTCCCTCGATAGTTTGCTAAATTCTACAATTATAATTCTACATTTCCCGCTGGTTGAAACAACGCTTCAAGCCAGAGGATTAACAAACAATTCAGAGGTAACGGAACCCTAACTTCCAACCCCCCTTTTTGCTTAGCAAGAAGGGTAACGTGTTTACACACACATAGTGGGCGCATCAGAATGCTTTCATGGACGTATTATTGGCGGATCGTATCCCTCGCTCCCGGAGGATCTATCTCACAAGATGGCGAGAAACCACGTACCGATCGCTGTATATTCGCAGCATCGGAAGACATGGAATCGATGCGGAACCATGAGCAGATCTTTATGCGGCTTATGCGTCGATACAAGTATCTCGAGAAAATGTTTGAAGAGGAGATGAAGAAAATTCTCATCTTCATCAAGGGTGTTACTCCACTCGAAAGGATCAAGCTCGCTCGCATGACGGCTCTATGGATGGCCAATGGTTCCATTCCGCCGCAAGTGTTGAGCGTACTGGACCATGAACACCTGACG] consensusID : consensus_7135#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCGCGGACGCGTGGGCGGAACTGGATGCTGTTCGGCTTGAAGTCACCGGAACGCGGTTCTTCCCCGTGAGGAATGGGTTTTCCCATGTGGTCTTTCCCTGTTTGTTGCCTTCTCAGTGTACAACAAGTACACCGAACCTCAACATCATAAAAAGTGAAGAAAGGAAGAATGTAACACAAACAAACACAGTCTAATTACATCGCTACAAGAAAACACAAGGAAGAACAAAAAAGTACGAAACGGAAACAAAGTGTATTTAGATTGAAAACTGTTACGAAGAAGAAGAAAGATTCGTGTTTTGTTGTGAGAGGAAGCTTTAAACAACAGCAAGGAAGATCCTGTGCTACCGTTAACTAGCTAAAACACCTACTATCTACCTTTTAAAACAAAACACCCTGATACCATACAATTACTTTTACCGATAAGTTACAAAGTGGAACCAACCATCTTTTGTTAGTGACACAATCACAACACAAGCTGTGACTCCTTTCCGTGTTGATCCTTTTGCCACCACCCGCCCCCTGTTGGACAGCAATATTAAGAAGGGTTCTGGGAGGGAGCAGGAGGGCACACGAAGGAAGAGAAGCAGCAGAAAACCTCTATTGCCCGCAGAGTAGCAAACACTACATCCATC] [+] EMBL BM603768 [CCGCGGACGCGTGGGCGGAACTGGATGCTGTTCGGCTTGAAGTCACCGGAACGCGGTTCTTCCCCGTGAGGAATGGGTTTTCCCATGTGGTCTTTCCCTGTTTGTTGCCTTCTCAGTGTACAACAAGTACACCGAACCTCAACATCATAAAAAGTGAAGAAAGGAAGAATGTAACACAAACAAACACAGTCTAATTACATCGCTACAAGAAAACACAAGGAAGAACAAAAAAGTACGAAACGGAAACAAAGTGTATTTAGATTGAAAACTGTTACGAAGAAGAAGAAAGATTCGTGTTTTGTTGTGAGAGGAAGCTTTAAACAACAGCAAGGAAGATCCTGTGCTACCGTTAACTAGCTAAAACACCTACTATCTACCTTTTAAAACAAAACACCCTGATACCATACAATTACTTTTACCGATAAGTTACAAAGTGGAACCAACCATCTTTTGTTAGTGACACAATCACAACACAAGCTGTGACTCCTTTCCGTGTTGATCCTTTTGCCACCACCCGCCCCCTGTTGGACAGCAATATTAAGAAGGGTTCTGGGAGGGAGCAGGAGGGCACACGAAGGAAGAGAAGCAGCAGAAAACCTCTATTGCCCGCAGAGTAGCAAACACTACATCCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7135#1 ------------------------------------------------------------ consensus_7135#0 CCGCGGACGCGTGGGCAGCGAGGGACAGAAGTCGATTTCCCGGCCTTTCATCGCAAGCAA 60 consensus_7135#2 ------------------------------------------------------------ consensus_7135#1 ------------------------------------------------------------ consensus_7135#0 CATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACA 120 consensus_7135#2 ------------------------------------------------------------ consensus_7135#1 ------------------------------------------------------------ consensus_7135#0 ATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTAC 180 consensus_7135#2 ------------------------------------------------------------ consensus_7135#1 ------------------------------------------------------------ consensus_7135#0 ATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACG 240 consensus_7135#2 ------------------------------------------------------------ consensus_7135#1 -------CCGCCCACGCGTCCGACCGGTCGACCTAGATTAGGCTACACAAGCTTCATAAT 53 consensus_7135#0 GTGGAGCTCGTGAAGAACGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAAC 300 consensus_7135#2 -------CCGCGGACGCGTGGGCGGAACTGGATGCTGTTCGGCT-TGAAGTCACCGGAAC 52 ** * * *** * ** consensus_7135#1 ACGA-AACCCCACAAACGCTACACAAAATGTATCATAAACGTACAA--AAAGGTTTTATT 110 consensus_7135#0 ACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATG 360 consensus_7135#2 GCGG--TTCTTCCCCGTGAGGAATGGGTTTTCCCATGTGGTCTTTC----CCTGTTTGTT 106 ** * * * * * * consensus_7135#1 TTCACTCCTGTTTTCTGCTTCGTTGTC-------TTTCCCTCGA-TAGTTTGCTAA--AT 160 consensus_7135#0 GTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAG 420 consensus_7135#2 GCCTTCTCAGTGTACAACAAGTACACCGA-----ACCTCAACATCATAAAAAGTGAAGAA 161 * * ** * * * * * * * * consensus_7135#1 TCTACAATTATAATTCTACATTTC----CCGCTGGTTGAAACAACGCTTCAAG-CCAGAG 215 consensus_7135#0 CCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGAC-TGCCGG 479 consensus_7135#2 AGGAAGAATGTAACACAAACAAACAC--AGTCTAATTACATCGCTACAAGAAAACACAAG 219 * * * * * * * * * * * * consensus_7135#1 GATTAACAAACAATTCAGAGGTAACGGAACCCTAACTTCCAACCCCCCTTTTTGCTTAGC 275 consensus_7135#0 CAACGCCAAGTGCGTCCGCTACTACAAGGCC---GTCTAAGAAGGACCGACCGACCGAGC 536 consensus_7135#2 GAAGAACAAAAAAGTACGAAACGGAAACAAAGTGTATTTAGATTGAAAACTGTTACGAAG 279 * *** * * * * * consensus_7135#1 AAGAAGGGTAACGTGTTTACACACACATAGTGGGCGCATCA--GAATGCTTTCATGGACG 333 consensus_7135#0 GAGCGAGCTTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGAC-CTTTGCTT 595 consensus_7135#2 AAGAAGAAAGATTCGTGTTTTGTTGTG-AGAGGAAGCTTTAAACAACAGCAAGGAAGATC 338 ** * * * * * * * consensus_7135#1 TATTATTGGCGGATCGTATCCCTCGCTCCCGGAGGATCTA--TCTCACAAGATGGCGAGA 391 consensus_7135#0 TACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGG 655 consensus_7135#2 CTGTGCTACCG--TTAACTAGCTAAAACACCTACTATCTACCTTTTAAAACAAAACACCC 396 * * * ** ** * * * consensus_7135#1 AACCACGTACCGATCGCTGTATATTCGCAGCATCGGAAGACATGGAATCGATGCGGAACC 451 consensus_7135#0 ACGTAGCAACTAACAGACTAAACGGAGAAACACACACAGACACAGAACCCTTGCGGG-TG 714 consensus_7135#2 TGATACCATACAATTACTTTTACCGATAAGTTACAAAGTGGAACCAACCATCTTTTGTTA 456 * * * * ** * consensus_7135#1 ATGAGCAGATCTTTATGCGGCT---------------TATGCGTCGATACAAGTATCTCG 496 consensus_7135#0 AGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTAT 774 consensus_7135#2 GTGACACAATCACAACACAAGCT----GTGACTCCTTTCCGTGTTGATCCTTTTGCCACC 512 ** * * * ** * * consensus_7135#1 AGAAAATGTTTGAAGAGGAGATGAAGAAAATTCTCATCTTCAT-CAAGGGTGTTACTCCA 555 consensus_7135#0 AAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTACGTGTGTGCGTGTGCACGTACC 834 consensus_7135#2 ACCCGCCCCCTGTTGGACAGCAATATTAAGAAGGGTTCTGGGAGGGAGCAGGAGGGCACA 572 * * * * * * * * consensus_7135#1 CTCGAAAGGATCAAGCTCGCT--CGCATGACGGCTCTATG-GATGGCCAATGGTTCCATT 612 consensus_7135#0 GAAGAAGCAAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGTTTATGTATATATT 894 consensus_7135#2 CGAAGGAAGAGAAGCAGCAGAAAACCTCTATTGCCCGCAG-AGTAGCAAACA-CTACATC 630 * * * * * * * * * ** consensus_7135#1 CCGCCGCAAGTGTTGAGCGTACTGGACCATGAACACCTGACG------------------ 654 consensus_7135#0 TCGTACGAAATATTATG---ATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAGGCCAC 951 consensus_7135#2 CATC-------------------------------------------------------- 634 consensus_7135#1 ------------------- consensus_7135#0 ATGTGCTCGAGCTGCAGGG 970 consensus_7135#2 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||