These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1317 fasta sequence [GGGCGGGGGCCACCCTATTCGACCGCAGAGCGTGCGCGCGGGACAGGGATCCAGGGCTCCGCTCGATGTGAGAAGCGTTTGTTTTGGTCGGTACGTGGTTGCCTGGTGGTGTGCGCGGGGCGGTGTTGTTCGTAGTATGTGCATTGGGCCGAAAGGATGTTGATGCGGTCGGGGATAGAGCGGTCGGGCAGCCGGGAGCAGCGGGACCAGCAGCAGGACTGGGTGATGATGTCGCCCCTGTGGACGGCCCGCTACGACTACGAGGCGCAGGGCGACGACGAGCTGTCGCTCCGGGTGGGCCAGATCGTGTACGTGCTGTCGACCGACAGCAGCATCTCGGGCGACGAGGGCTGGTGGACGGGCAAGATCGGGGACCGGGTGGGCATCTTTCCGTCGAACTTTGTCACGAACGAGGACCCGGCGGTGTTGAAGGTGCAGCCGGTCGAGATCCAGTACCACGAGCTCGACCTGAAGGAGGTGATCGGCGTCGGGGGCTTCAGCAAGGTGCACCGCGCCTTCCTGAACGGGGAGGAGGTGGCGGTGAAAGCGT-CCCGGCAGGACGACGAGTTCGAGGTGGCGCGGCAGAACGTGCTGCAGGAGGCGAA-CTGTCTCTGGTCGCTCAAGCATCCGAACATCGTGTCGCTCAAGGGCGTCTGTCTCGATCCGAAAACGCTCTGCCTGGTGATGGAGTACGCGCGGGGCGGCTCGCTCAACAAGATACTGGCGGGGCGGAAGATACCACCGAACGTGCTGGTCGACTGGGCGATCCAGATCGCGCGTGGTATGAAGTATCTGCACTGCGAGGCCCCAATCTCCGTCATCCATCGCGATTTGAAGAGCTCGAACGTACTGATCAGCGAATCGATCCAGCACGGTCATCTGCTCAACAAAACGCTCAAAATCACCGACTTCGGGCTGGCCCGAGAGGCGTACCGGACTACTCGAATGTCGGCAGCCGGCACCTTCGCCTGGATGCCACCGGAGGTGATCAAATCGGGAACGTACTCCAAAGCGTCCGATGTGTGGAGCTACGGGGTGCTGCTGTGGGAATTGCTCACCGGGGAAACTCCCTACAAGGGCTTCGACTCGCTGTCGGTAGCGTACGGTGTAGCAGTGAATACGCTCGCCTTACCGATCCCGAAAACCTGCCCCGAATCATGGGGCAAACTGATGAAATCCTGCTGGGAGATCGATCCACACCGTAGGCCTTCGTTTAAGGATATTGAAAAGGATCTGGACATCATTGCGCGGTCCGGCTTTGCT-CAAACGCCCCACGAATCATTCCACACGATGCAGGACGGCTGGAAAAAGGAAAGA] [+] EMBL CNS09A35 [GGGCGGGGGCCACCCTATTCGACCGCAGAGCGTGCGCGCGGGACAGGGATCCAGGGCTCCGCTCGATGTGAGAAGCGTTTGTTTTGGTCGGTACGTGGTTGCCTGGTGGTGTGCGCGGGGCGGTGTTGTTCGTAGTATGTGCATTGGGCCGAAAGGATGTTGATGCGGTCGGGGATAGAGCGGTCGGGCAGCCGGGAGCAGCGGGACCAGCAGCAGGACTGGGTGATGATGTCGCCCCTGTGGACGGCCCGCTACGACTACGAGGCGCAGGGCGACGACGAGCTGTCGCTCCGGGTGGGCCAGATCGTGTACGTGCTGTCGACCG ] [+] EMBL CNS09A3G [ gagCAGGGATCCAGGGCTCCGCTCGATGTGAGAAGCGTTTGTTTTGGTCGGTACGTGGTTGCCTGGTGGTGTGCGCGGGGCGGTGTTGTTCGTAGTATGTGCATTGGGCCGAAAGGATGTTGATGCGGTCGGGGATAGAGCGGTCGGGCAGCCGGGAGCAGCGGGACCAGCAGCAGGACTGGGTGATGATGTCGCCCCTGTGGACGGCCCGCTACGACTACGAGGCGCAGGGCGACGACGAGCTGTCGCTCCGGGTGGGCCAGATCGTGTACGTGCTGTCGACCGACAGCAGCATCTCGGGCGACGAGGGCTGGTGGACGGGCAAGATCGGGGACCGGGTGGGCATCTTTCCGTCGAACTTTGTCACGAACGAGGACCCGGCGGTGTTGAAGGTGCAGCCGGTCGAGATCCAGTACCACGAGCTCGACCTGAAGGAGGTGATCGGCGTCGGGGGCTTCAGCAAGGTGCACCGCGCCTTCCTGAACGGGGAGGAGGTGGCGGTGAAAGCGT CCCGGCAGGACGACGAGTTCGAGGTGGCGCGGCAGAACGTGCTGCAGGAGGCGAA CTGTCTCTGGTCGCTCAAGCATCCGAA ] [-] EMBL CNS09A3H [ CAAGGTGCACCGCGCCTTCCTGAACGGGGAGGAGGTGGCGGTGAAAGCGTCCCCGGCAGGACGACGAGTTCGAGGTGGCGCGGCAGAACGTGCTGCAGGAGGCGAAGCTGT TCTGGTCGCTCAAGCATCCGAACATCGTGTCGCTCAAGGGCGTCTGTCTCGATCCGAAAACGCTCTGCCTGGTGATGGAGTACGCGCGGGGCGGCTCGCTCAACAAGATACTGGCGGGGCGGAAGATACCACCGAACGTGCTGGTCGACTGGGCGATCCAGATCGCGCGTGGTATGAAGTATCTGCACTGCGAGGCCCCAATCTCCGTCATCCATCGCGATTTGAAGAGCTCGAACGTACTGATCAGCGAATCGATCCAGCACGGTCATCTGCTCAACAAAACGCTCAAAATCACCGACTTCGGGCTGGCCCGAGAGGCGTACCGGACTACTCGAATGTCGGCAGCCGGCACCTTCGCCTGGATGCCACCGGAGGTGATCAAATCGGGAACGTACTCCAAAGCGTCCGATGTGTGGAGCTACGGGGTGCTGCTGTGGGAATTGCTCACCGGGGAAACTCCCTACAAGGGCTTCGACTCGCTGTCGGTAGCGTACGGTGTAGCAGTGAATACGCTCGCCTTACCGATCCCGAAAACCTGCCCCGAATCATGGGGCAAACTGATGAAATCCTGCTGGGAGATCGATCCACACCGTAGGCCTTCGTTTAAGGATATTGAAAAGGATCTGGACATCATTGCGCGGTCCGGCTTTGCT CAAACGCCCCACGAATCATTCCACACGATGCAGGACGGCTGGAAAAAGGAAAGA] [-] EMBL CNS09A36 [ GCGCGGGGCGGCTCGCTCAACAAGATACTGGCGGGGCGGAAGATACCACCGAACGTGCTGGTCGACTGGGCGATCCAGATCGCGCGTGGTATGAAGTATCTGCACTGCGAGGCCCCAATCTCCGTCATCCATCGCGATTTGAAGAGCTCGAACGTACTGATCAGCGAATCGATCCAGCACGGTCATCTGCTCAACAAAACGCTCAAAATCACCGACTTCGGGCTGGCCCGAGAGGCGTACCGGACTACTCGAATGTCGGCAGCCGGCACCTTCGCCTGGATGCCACCGGAGGTGATCAAATCGGGAACGTACTCCAAAGCGTCCGATGTGTGGAGCTACGGGGTGCTGCTGTGGGAATTGCTCACCGGGGAAACTCCCTACAAGGGCTTCGACTCGCTGTCGGTAGCGTACGGTGTAGCAGTGAATACGCTCGCCTTACCGATCCCGAAAACCTGCCCCGAATCATGGGGCAAACTGATGAAATCCTGCTGGGAGATCGATCCACACCGTAGGCCTTCGTTTAAGGATATTGAAAAGGATCTGGACATCATTGCGCGGTCCGGCTTTGCTACAAACGC ] consensusID : consensus_7136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 907 fasta sequence [GCAGAATCCCCGAGGTTATCGAACATCGTGTCGCTCAAGGGCGTCTGTCTCGATCCGAAAACGCTCTGCCTGGTGATGNGAGTACGCGCGGGGCGGCTCGCTCAACAAGATACTGGCGGGGCGGAAGATACCACCGAACGTGCTGGTCGACTGGGCGATCCAGATCGCGCGCGGTATGAAGTATCTGCACTGCGAGGCGCCAATCTCCGTCATCCATCGCGATTTGAAGAGCTCGAACGTACTGATCAGCGAATCGATCCAGCACGGTCATCTGCTCAACAAAACGCTCAAAATCACCGACTTCGGGCTGGCCCGAGAGGCGTACCGGACTACTCGAATGTCGGCAGCCGGCACCTTCGCCTGGATGCCACCGGAGGTGATCAAATCGGGAACGTACTCCAAAGCGTCCGATGTGTGGAGCTACGGGGTGCTGCTGTGGGAATTGCTCACCGGGGAAACTCCCTACAAGGGCTTCGACTCGCTGTCGGTAGCGTACGGTGTGGCGGTGAATACGCTCGCCTTACCGATCCCGAAAACCTGCCCCGAATCATGGGGCAAACTGATGAAATCCTGCTGGGAGATCGATCCACACCGTAGGCCTTCGTTTAAGGATATTGAAAAGGATCTGGACATCATTGCGCGGTCCGGCTTTGCTCAAACGCCCCACGAATCATTCCACACGATGCAGGACGGCTGG-AAAACGGAANATCGCGGNAGTGTTGCAAGAATTGCGTAACAACAGCAAAAGGAACTACGCAGCAAAGAGGAGGAACTGACGCGAGTTCAGCAAGAGCAGCGCTACAAGGAGGAAAATCTTTGCAAAGCGAGAGCAGGAGCTGCACGCGGCGGGAAATCGAGGCTACTGGGCCGTGAGCTGAAAATTCTTAATCAATCAAAATACTCCTAC] [+] EMBL AL933050 [GCAGAATCCCCGAGGTTATCGAACATCGTGTCGCTCAAGGGCGTCTGTCTCGATCCGAAAACGCTCTGCCTGGTGATGNGAGTACGCGCGGGGCGGCTCGCTCAACAAGATACTGGCGGGGCGGAAGATACCACCGAACGTGCTGGTCGACTGGGCGATCCAGATCGCGCGCGGTATGAAGTATCTGCACTGCGAGGCGCCAATCTCCGTCATCCATCGCGATTTGAAGAGCTCGAACGTACTGATCAGCGAATCGATCCAGCACGGTCATCTGCTCAACAAAACGCTCAAAATCACCGACTTCGGGCTGGCCCGAGAGGCGTACCGGACTACTCGAATGTCGGCAGCCGGCACCTTCGCCTGGATGCCACCGGAGGTGATCAAATCGGGAACGTACTCCAAAGCGTCCGATGTGTGGAGCTACGGGGTGCTGCTGTGGGAATTGCTCACCGGGGAAACTCCCTACAAGGGCTTCGACTCGCTGTCGGTAGCGTACGGTGTGGCGGTGAATACGCTCGCCTTACCGATCCCGAAAACCTGCCCCGAATCATGGGGCAAACTGATGAAATCCTGCTGGGAGATCGATCCACACCGTAGGCCTTCGTTTAAGGATATTGAAAAGGATCTGGACATCATTGCGCGGTCCGGCTTTGCTCAAACGCCCCACGAATCATTCCACACGATGCAGGACGGCTGG AAAACGGAANATCGCGGNAGTGTTGCAAGAATTGCGTAACAACAGCAAAAGGAACTACGCAGCAAAGAGGAGGAACTGACGCGAGTTCAGCAAGAGCAGCGCTACAAGGAGGAAAATCTTTGCAAAGCGAGAGCAGGAGCTGCACGCGGCGGGAAATCGAGGCTACTGGGCCGTGAGCTGAAAATTCTTAATCAATCAAAATACTCCTAC] [+] EMBL BM605516 [ ccggGAGTACGCGCGGGGCGGCTCGCTCAACAAGATACTGGCGGGGCGGAAGATACCACCGAACGTGCTGGTCGACTGGGCGATCCAGATCGCGCGCGGTATGAAGTATCTGCACTGCGAGGCGCCAATCTCCGTCATCCATCGCGATTTGAAGAGCTCGAACGTACTGATCAGCGAATCGATCCAGCACGGTCATCTGCTCAACAAAACGCTCAAAATCACCGACTTCGGGCTGGCCCGAGAGGCGTACCGGACTACTCGAATGTCGGCAGCCGGCACCTTCGCCTGGATGCCACCGGAGGTGATCAAATCGGGAACGTACTCCAAAGCGTCCGATGTGTGGAGCTACGGGGTGCTGCTGTGGGAATTGCTCACCGGGGAAACTCCCTACAAGGGCTTCGACTCGCTGTCGGTAGCGTACGGTGTGGCGGTGAATACGCTCGCCTTACCGATCCCGAAAACCTGCCCCGAATCATGGGGCAAACTGATGAAATCCTGCTGGGAGATCGATCCACACCGTAGGCCTTCGTTTAAGGATATTGAAAAGGATCTGGACATCATTGCGCGGTCCGGCTTTGCTCAAACGCCCCACGAATCATTCCACACGATGCAGGACGGCTGGAAAAAAGGAA ATCGCGGAAGTGTTGCAAGAATTGCGTAA AAAAG AAAAGGAACTACGCAGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7136#0 GGGCGGGGGCCACCCTATTCGACCGCAGAGCGTGCGCGCGGGACAGGGATCCAGGGCTCC 60 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 GCTCGATGTGAGAAGCGTTTGTTTTGGTCGGTACGTGGTTGCCTGGTGGTGTGCGCGGGG 120 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 CGGTGTTGTTCGTAGTATGTGCATTGGGCCGAAAGGATGTTGATGCGGTCGGGGATAGAG 180 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 CGGTCGGGCAGCCGGGAGCAGCGGGACCAGCAGCAGGACTGGGTGATGATGTCGCCCCTG 240 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 TGGACGGCCCGCTACGACTACGAGGCGCAGGGCGACGACGAGCTGTCGCTCCGGGTGGGC 300 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 CAGATCGTGTACGTGCTGTCGACCGACAGCAGCATCTCGGGCGACGAGGGCTGGTGGACG 360 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 GGCAAGATCGGGGACCGGGTGGGCATCTTTCCGTCGAACTTTGTCACGAACGAGGACCCG 420 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 GCGGTGTTGAAGGTGCAGCCGGTCGAGATCCAGTACCACGAGCTCGACCTGAAGGAGGTG 480 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 ATCGGCGTCGGGGGCTTCAGCAAGGTGCACCGCGCCTTCCTGAACGGGGAGGAGGTGGCG 540 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 GTGAAAGCGTCCCGGCAGGACGACGAGTTCGAGGTGGCGCGGCAGAACGTGCTGCAGGAG 600 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 GCGAACTGTCTCTGGTCGCTCAAGCATCCGAACATCGTGTCGCTCAAGGGCGTCTGTCTC 660 consensus_7136#1 ---------GCAGAATCCCCGAGGTTATCGAACATCGTGTCGCTCAAGGGCGTCTGTCTC 51 ** * * * ******************************** consensus_7136#0 GATCCGAAAACGCTCTGCCTGGTGATGG-AGTACGCGCGGGGCGGCTCGCTCAACAAGAT 719 consensus_7136#1 GATCCGAAAACGCTCTGCCTGGTGATGNGAGTACGCGCGGGGCGGCTCGCTCAACAAGAT 111 *************************** ******************************* consensus_7136#0 ACTGGCGGGGCGGAAGATACCACCGAACGTGCTGGTCGACTGGGCGATCCAGATCGCGCG 779 consensus_7136#1 ACTGGCGGGGCGGAAGATACCACCGAACGTGCTGGTCGACTGGGCGATCCAGATCGCGCG 171 ************************************************************ consensus_7136#0 TGGTATGAAGTATCTGCACTGCGAGGCCCCAATCTCCGTCATCCATCGCGATTTGAAGAG 839 consensus_7136#1 CGGTATGAAGTATCTGCACTGCGAGGCGCCAATCTCCGTCATCCATCGCGATTTGAAGAG 231 ************************** ******************************** consensus_7136#0 CTCGAACGTACTGATCAGCGAATCGATCCAGCACGGTCATCTGCTCAACAAAACGCTCAA 899 consensus_7136#1 CTCGAACGTACTGATCAGCGAATCGATCCAGCACGGTCATCTGCTCAACAAAACGCTCAA 291 ************************************************************ consensus_7136#0 AATCACCGACTTCGGGCTGGCCCGAGAGGCGTACCGGACTACTCGAATGTCGGCAGCCGG 959 consensus_7136#1 AATCACCGACTTCGGGCTGGCCCGAGAGGCGTACCGGACTACTCGAATGTCGGCAGCCGG 351 ************************************************************ consensus_7136#0 CACCTTCGCCTGGATGCCACCGGAGGTGATCAAATCGGGAACGTACTCCAAAGCGTCCGA 1019 consensus_7136#1 CACCTTCGCCTGGATGCCACCGGAGGTGATCAAATCGGGAACGTACTCCAAAGCGTCCGA 411 ************************************************************ consensus_7136#0 TGTGTGGAGCTACGGGGTGCTGCTGTGGGAATTGCTCACCGGGGAAACTCCCTACAAGGG 1079 consensus_7136#1 TGTGTGGAGCTACGGGGTGCTGCTGTGGGAATTGCTCACCGGGGAAACTCCCTACAAGGG 471 ************************************************************ consensus_7136#0 CTTCGACTCGCTGTCGGTAGCGTACGGTGTAGCAGTGAATACGCTCGCCTTACCGATCCC 1139 consensus_7136#1 CTTCGACTCGCTGTCGGTAGCGTACGGTGTGGCGGTGAATACGCTCGCCTTACCGATCCC 531 ****************************** ** ************************** consensus_7136#0 GAAAACCTGCCCCGAATCATGGGGCAAACTGATGAAATCCTGCTGGGAGATCGATCCACA 1199 consensus_7136#1 GAAAACCTGCCCCGAATCATGGGGCAAACTGATGAAATCCTGCTGGGAGATCGATCCACA 591 ************************************************************ consensus_7136#0 CCGTAGGCCTTCGTTTAAGGATATTGAAAAGGATCTGGACATCATTGCGCGGTCCGGCTT 1259 consensus_7136#1 CCGTAGGCCTTCGTTTAAGGATATTGAAAAGGATCTGGACATCATTGCGCGGTCCGGCTT 651 ************************************************************ consensus_7136#0 TGCTCAAACGCCCCACGAATCATTCCACACGATGCAGGACGGCTGGAAAAAGGAAAGA-- 1317 consensus_7136#1 TGCTCAAACGCCCCACGAATCATTCCACACGATGCAGGACGGCTGGAAAACGGAANATCG 711 ************************************************** **** consensus_7136#0 ------------------------------------------------------------ consensus_7136#1 CGGNAGTGTTGCAAGAATTGCGTAACAACAGCAAAAGGAACTACGCAGCAAAGAGGAGGA 771 consensus_7136#0 ------------------------------------------------------------ consensus_7136#1 ACTGACGCGAGTTCAGCAAGAGCAGCGCTACAAGGAGGAAAATCTTTGCAAAGCGAGAGC 831 consensus_7136#0 ------------------------------------------------------------ consensus_7136#1 AGGAGCTGCACGCGGCGGGAAATCGAGGCTACTGGGCCGTGAGCTGAAAATTCTTAATCA 891 consensus_7136#0 ---------------- consensus_7136#1 ATCAAAATACTCCTAC 907 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||