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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence
[CCAGGCAATTTTAACTTCAAAGAGAAAGGTTTCAAAAGCAGCCAAAGTTACGACATAGATCCGCAAGTGCTGGAAATACAGCGACAGAACCTGATCACGCAGAAGATCCTCCAGCGCTACCTGGAGCGACGGCTGCATCCGGGCCGTAAGCCACAGATCCGCGTGCCATCGGTGGAGGAGATACTTCCGAAGCCGTTCTCCCCACTAGCGTCCGTACGGGACGTCCGGCAGCAGAACCAAACCGAGTCGGACGATAATGGTGGCGCACGGTACGATCTGTTCAACGGGCAGAACGGCCGGCAGTACAACCGGAGCGAAGAGGACGGTGGTGGCGGCGGCAGCAGTCAGGACGAGCAGCAGTACAACGACGAGGGAGGGGACGACTACCGAGAGGAGCGGGACCTGGACCAGTACGACGATCTCGGTGACGAATCGACGTACGACAACGATCGCTTCGACATCGAGTCGCTGCAGTCGGGCGAATCGGAGCACGTGGACTCGTTCTATCGCGACAAGTACTACAGCAGACAGAGAGCATCTCAGCTCTCGGACTGTCCGAACTGCGTTGAAGAATCATCTGCACCACCGCGATGGACTATGCCGCTGCTGAAGCTTGGCGAAAAGCGTTACTATCTCAGCATTTTCTTCAAGGCAAATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTTGCGAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGGAA]
[+] EMBL BX605633 [CCAGGCAATTTTAACTTCAAAGAGAAAGGTTTCAAAAGCAGCCAAAGTTACGACATAGATCCGCAAGTGCTGGAAATACAGCGACAGAACCTGATCACGCAGAAGATCCTCCAGCGCTACCTGGAGCGACGGCTGCATCCGGGCCGTAAGCCACAGATCCGCGTGCCATCGGTGGAGGAGATACTTCCGAAGCCGTTCTCCCCACTAGCGTCCGTACGGGACGTCCGGCAGCAGAACCAAACCGAGTCGGACGATAATGGTGGCGCACGGTACGATCTGTTCAACGGGCAGAACGGCCGGCAGTACAACCGGAGCGAAGAGGACGGTGGTGGCGGCGGCAGCAGTCAGGACGAGCAGCAGTACAACGACGAGGGAGGGGACGACTACCGAGAGGAGCGGGACCTGGACCAGTACGACGATCTCGGTGACGAATCGACGTACGACAACGATCGCTTCGACATCGAGTCGCTGCAGTCGGGCGAATCGGAGCACGTGGACTCGTTCTATCGCGACAAGTACTACAGCAGACAGAGAGCATCTCAGCTCTCGGACTGTCCGAACTGCGTTGAAGAATCATCTGCACCACCGCGATGGACTATGCCGCTGCTGAAGCTTGGCGAAAAGCGTTACTATCTCAGCATTTTCTTCAAGGCAAATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTTGCGAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGGAA]
consensusID : consensus_7144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[CTGTGCGCGCTTGTGCTGTGAGAGTGTGGTTTTTTTATTTCGTGCGCTAAAGTTGCCGCGTGCGTACAGGTGAATGGAGTAGCGTGCAACGGAAGAAGCTGCATCGGATTTATGTGTTTTCTGTGAATAAGTTGTGTTTTTACACAGTGAAAATCACTAAACAGTGTGTAAATTTAAATCGAGATTTAAGAACACACATACAACCGTAACACCAAAGCTTCCAACATGCAGCCAAACAAGCTCGTGTCACACTGTGTGCGATGGAATCGGATGGGCTTCGTCCTGGCCGTGCTGGTGCTGCTGCTCAGTGAAAGTGTAATTCAGTGTGCAACGCCAAAGGCTCTCGCGGGCAACTCGCACGACTGTCCGAACTGCGTTGAAGAATCATCTGCACCACCGCGATGGACTATGCCGCTGCTGAAGCTTGGCGAAAAGCGTTACTATCTCAGCATTTTCTTCAAGGCAAATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTTGCGAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGAAATACGTAAAGGATTACGGTCTCGCCACCGAACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGCAGCTTCTTCTGGGTGTCGAACGGTCGACCGCTTTCCTTCACCAACTGGAACGCCGGTGAACCGAACAACTTCCGCTACGAAAACGGCGANGANGAGCACTGTCTCGAGCTG]
[+] EMBL BX621498 [CTGTGCGCGCTTGTGCTGTGAGAGTGTGGTTTTTTTATTTCGTGCGCTAAAGTTGCCGCGTGCGTACAGGTGAATGGAGTAGCGTGCAACGGAAGAAGCTGCATCGGATTTATGTGTTTTCTGTGAATAAGTTGTGTTTTTACACAGTGAAAATCACTAAACAGTGTGTAAATTTAAATCGAGATTTAAGAACACACATACAACCGTAACACCAAAGCTTCCAACATGCAGCCAAACAAGCTCGTGTCACACTGTGTGCGATGGAATCGGATGGGCTTCGTCCTGGCCGTGCTGGTGCTGCTGCTCAGTGAAAGTGTAATTCAGTGTGCAACGCCAAAGGCTCTCGCGGGCAACTCGCACGACTGTCCGAACTGCGTTGAAGAATCATCTGCACCACCGCGATGGACTATGCCGCTGCTGAAGCTTGGCGAAAAGCGTTACTATCTCAGCATTTTCTTCAAGGCAAATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTTGCGAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGAAATACGTAAAGGATTACGGTCTCGCCACCGAACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGCAGCTTCTTCTGGGTGTCGAACGGTCGACCGCTTTCCTTCACCAACTGGAACGCCGGTGAACCGAACAACTTCCGCTACGAAAACGGCGANGANGAGCACTGTCTCGAGCTG]
consensusID : consensus_7144#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[AATCGCCNCGAGGGCATTTTCTTCAAGGCAATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTTGCGAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGAAATACGTAAAGGATTACGGTCTCGCCACCGAACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGCAGCTTCTTCTGGGTGTCGAACGGTCGACCGCTTTCCTTCACCAACTGGAACGCCGGTGAACCGAACAACTTCCGCTACGAAAACGGCGAGGAGGAGCACTGTCTCGAGCTGTGGAACCGGGACGGCAAGGGTCTGAAATGGAACGACACACCCTGCAGCTTCGAGACGTACTTCATCTGCGAGGTCTAAGCGCCCGCGTACCGGACTGTCACTGTGTTTATCCGATTGCCCATACCCCCTCTTCCTACTGCACTTTCGAGCTGCTGTGGCTCGGAAGTGATCATAGTTCTTGCCGGTTNTTATCTTCTCTCATGCTGTCATGCTGTCGTATCGTGTTCAAACGAAGTGTTTCGTTCCAAATCAGTGGGCGAAATGGACGAAAAACAACAGGCTGGGGGTGGGGTACGG]
[+] EMBL AL934628 [AATCGCCNCGAGGGCATTTTCTTCAAGGCAATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTTGCGAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGAAATACGTAAAGGATTACGGTCTCGCCACCGAACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGCAGCTTCTTCTGGGTGTCGAACGGTCGACCGCTTTCCTTCACCAACTGGAACGCCGGTGAACCGAACAACTTCCGCTACGAAAACGGCGAGGAGGAGCACTGTCTCGAGCTGTGGAACCGGGACGGCAAGGGTCTGAAATGGAACGACACACCCTGCAGCTTCGAGACGTACTTCATCTGCGAGGTCTAAGCGCCCGCGTACCGGACTGTCACTGTGTTTATCCGATTGCCCATACCCCCTCTTCCTACTGCACTTTCGAGCTGCTGTGGCTCGGAAGTGATCATAGTTCTTGCCGGTTNTTATCTTCTCTCATGCTGTCATGCTGTCGTATCGTGTTCAAACGAAGTGTTTCGTTCCAAATCAGTGGGCGAAATGGACGAAAAACAACAGGCTGGGGGTGGGGTACGG]
consensusID : consensus_7144#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 507 fasta sequence
[AATCGCCCGAGAAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGAAATACGTAAAGGATTACGGTCTCGCCACCGAACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGCAGCTTCTTCTGGGTGTCGAACGGTCGACCGCTTTCCTTCACCAACTGGAACGCCGGTGAACCGAACAACTTCCGCTACGAAAACGGCGAGGAGGAGCACTGTCTCGAGCTGTGGAACCGGGACGGCAAGGGTCTGAAATGGAACGACACACCCTGCAGCTTCGAGACGTACTTCATCTGCGAGGTCTAAGCGCCCGCGTACCGGACTGTCACTGTGTTTATCCGATTGCCCATACCCCCTCTTCCTACTGCACTTTCGAGCTGCTGTGGCTCGGAAGTGATCATAGTTCTTGCCGGTTTNTTCTTCTCTCATGCTGTCATGCTGTGTATTGTGTTCAAACGAAGTGTTTCGTTCCAAATCAGTGG-GCGAAATGGACGAAAAACAACA]
[+] EMBL AL933248 [AATCGCCCGAGAAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGAAATACGTAAAGGATTACGGTCTCGCCACCGAACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGCAGCTTCTTCTGGGTGTCGAACGGTCGACCGCTTTCCTTCACCAACTGGAACGCCGGTGAACCGAACAACTTCCGCTACGAAAACGGCGAGGAGGAGCACTGTCTCGAGCTGTGGAACCGGGACGGCAAGGGTCTGAAATGGAACGACACACCCTGCAGCTTCGAGACGTACTTCATCTGCGAGGTCTAAGCGCCCGCGTACCGGACTGTCACTGTGTTTATCCGATTGCCCATACCCCCTCTTCCTACTGCACTTTCGAGCTGCTGTGGCTCGGAAGTGATCATAGTTCTTGCCGGTTTNTTCTTCTCTCATGCTGTCATGCTGTGTATTGTGTTCAAACGAAGTGTTTCGTTCCAAATCAGTGG GCGAAATGGACGAAAAACAACA]
[+] EMBL BX610735 [ AAACGGCGAGGAGGAGCACTGTCGCGAGCTGTGGAACCGGGACGGCAAGGGTCTGAAATGGAACGACACACCCGGCAGCTTCGAGACGGACTGCAACTGCGAGGg ]
[+] EMBL BX625877 [ TCTGAAATGGAACGACACACCCTGCAGCTTCGAGACGTACTTCATCTGCGAGGTCTAAGCGCCCGCGTACCGGACTGTCACTGTGTTTATCCGATTGCCCATACCCCCTCTTCCTACTGCACTTTCGAGCTGCTGTGGCTCGGAAGTGATCATAGTTCTTGCCGGTTT TTCTTCTCTCATGCTGTCATGCTGTGTATTGTGTTCAAACGAAGTGTTTCGTTCCAAATCAGTGGCGCNAAAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7144#2 ------------------------------------------------------------
consensus_7144#3 ------------------------------------------------------------
consensus_7144#1 CTGTGCGCGCTTGTGCTGTGAGAGTGTGGTTTTTTTATTTCGTGCGCTAAAGTTGCCGCG 60
consensus_7144#0 --CCAGGCAATTTTAACTTCAAAGAGAAAGGTTTCAAAAGCA---GCCAAAGTTACGACA 55
consensus_7144#2 ------------------------------------------------------------
consensus_7144#3 ------------------------------------------------------------
consensus_7144#1 TGCGTACAGGTGAATGGAGTAGCGTGCAACGGAA---GAAGCTGCATCGGATTTATGTGT 117
consensus_7144#0 TAGATCCGCAAGTGCTGGAAATACAGCGACAGAACCTGATCACGCAGAAGATCCTCCAGC 115
consensus_7144#2 ------------------------------AATCGCCNCGAGGGCATTTTCTTC--AAGG 28
consensus_7144#3 ------------------------------------------------------------
consensus_7144#1 TTTCTGTGAATAAGTTGTGTTTTTACACAGTGAAAATCACTAAACAGTGTGTAA--ATTT 175
consensus_7144#0 GCTACCTGGA-GCGACGGCTGCATCCGGGCCGTAAGCCACAGATCCGCGTGCCATCGGTG 174
consensus_7144#2 CAATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTTGCGAGCATACA 88
consensus_7144#3 ---------------------------------------AAT-CGCCCGAGAAGCATACA 20
consensus_7144#1 AAATCGAGATTTAAGAACACACATACAACCGTAACACCAAAG-CTTCCAACATGCAGCCA 234
consensus_7144#0 GAGGAGATACTTCCGAAGCCGTTCTCCCCACTAGCGTCCGTACGGGACGTCCGGCAGCAG 234
***
consensus_7144#2 GACGCAGGAAGAAAACGATCGGTTGGAGAAATACGTAAAGGATTACGGTCTCGCCAC-CG 147
consensus_7144#3 GACGCAGGAAGAAAACGATCGGTTGGAGAAATACGTAAAGGATTACGGTCTCGCCAC-CG 79
consensus_7144#1 AACAAGCTCGTGTCACACTGTGTGCGATGGAATCG-GATGGGCTTCGTCCTGGCCGTGCT 293
consensus_7144#0 AACCAAACCGAGTCGGACGATAATGGTGGCGCACGGTACGATCTGTTCAACGGGCAGAAC 294
** * ** * * * * *
consensus_7144#2 AACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGC---AGCTTCTTCTGGGTG- 203
consensus_7144#3 AACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGC---AGCTTCTTCTGGGTG- 135
consensus_7144#1 GGTGCTGCTGCTCAGTGAAAGTGTAATTCAGTGTGCAACGCCAAAGGCTCTCGCGGGCAA 353
consensus_7144#0 GGC-CGGCAGTACAACCGGAGCGAAGAGGACGGTGGTGGC-----GGCGGCAGCAGTCAG 348
* * * * * * * * *
consensus_7144#2 -TCGAACGGTCGACCGCTTTCCTTCACCAACTGGA--ACGCCGGTGAACCGAACAACTTC 260
consensus_7144#3 -TCGAACGGTCGACCGCTTTCCTTCACCAACTGGA--ACGCCGGTGAACCGAACAACTTC 192
consensus_7144#1 CTCGCACGACTGTCCGAACTGCGTTGAAGAATCATCTGCACCACCGCGATGGACTA-TGC 412
consensus_7144#0 GACGAGCAGCAGTACAACGACGAGGGAGGGGACGACTACCGAGAGGAGCGGGACCTGGAC 408
** * * * * * * ** *
consensus_7144#2 CGCTACGAAAAC------GGCGAGGAGGAGCACTGTCTCGA--GCTGTGGAACCGGG--A 310
consensus_7144#3 CGCTACGAAAAC------GGCGAGGAGGAGCACTGTCTCGA--GCTGTGGAACCGGG--A 242
consensus_7144#1 CGCTGCTGAAGCTT----GGCGAAAAGCGTTACTATCTC-A--GCATTTTCTTCAAG--G 463
consensus_7144#0 CAGTACGACGATCTCGGTGACGAATCGACGTACGACAACGATCGCTTCGACATCGAGTCG 468
* * * * *** * ** * * ** * *
consensus_7144#2 CGGCAAGGGTCTGAAATGGAACGACACACCCTGCAGCTTCGAGACGTACTT-CATCTGCG 369
consensus_7144#3 CGGCAAGGGTCTGAAATGGAACGACACACCCTGCAGCTTCGAGACGTACTT-CATCTGCG 301
consensus_7144#1 CAA-ATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTTGCGAGCATA 522
consensus_7144#0 CTGCAGTCGGGCGAATCGGAGCACGTGGACTCGTTCTATCGCGACAAGTACTACAGCAGA 528
* * * * * * * * *
consensus_7144#2 AGGTCTAAGCGCCCGCGTACCGGACTGTC-ACTGTGTTTATCCGATTGC--CCATACCCC 426
consensus_7144#3 AGGTCTAAGCGCCCGCGTACCGGACTGTC-ACTGTGTTTATCCGATTGC--CCATACCCC 358
consensus_7144#1 CAGACGCAGGAAGAAAACGATCGGTTGGA-GAAATACGTAAAGGATTACGGTCTCGCCAC 581
consensus_7144#0 CAGA-GAGCATCTCAGCTCTCGGACTGTCCGAACTGCGTTGAAGAAT-CATCTGCACCAC 586
* * ** * * ** * * ** *
consensus_7144#2 CTCTTCCTACTGCACTTTCGA-GCTGCTGTGGCTCGGAAGTGATCATAGTTCTTGCCGGT 485
consensus_7144#3 CTCTTCCTACTGCACTTTCGA-GCTGCTGTGGCTCGGAAGTGATCATAGTTCTTGCCGGT 417
consensus_7144#1 CGAACACTTCTGGACCTCCGGTACCGATCTGGCCGAGGAGGGCAGCTTCTTCTGGGTGTC 641
consensus_7144#0 CGCGATGGACTATGCCGCTGCTGAAGCT-TGGC-GAAAAGCGTTACTA--TCTCAGCATT 642
* ** * * * * **** ** * * ***
consensus_7144#2 TNTTATCTTCTCTCATGCTGTCATGCTGTCGTATCGTGTTCAAACGAAGTGTTTC-GTT- 543
consensus_7144#3 TTNT-TCTTCTCTCATGCTGTCATGCTGT-GTATTGTGTTCAAACGAAGTGTTTC-GTT- 473
consensus_7144#1 GAACGGTCGACCGCTTTCCTTCACCAACTGGAACGCCGGTGAACCGAACAACTTCCGCT- 700
consensus_7144#0 TTCTTCAAGGCAAATTGGTTCAAGGCGCTGCAGTACTGTCGGTTCCATGGAATGCAGCTT 702
* * * * * * * * * *
consensus_7144#2 CCAAATCAGTGGGCG-AAATGGACGAAAAACAACAGGCTGGGGGTGGGGTACGG 596
consensus_7144#3 CCAAATCAGTGGGCG-AAATGGACGAAAAACAACA------------------- 507
consensus_7144#1 ACGAAAACGGCGANG-ANGAGCACTGTCTCGAGCTG------------------ 735
consensus_7144#0 GCGAGCATACAGACGCAGGAAGAAAACGATCGGTTGGAGGAA------------ 744
* * * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||