These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence [TTGAATAAAGCCACCAATTTCGTTTTATTAAATGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGA-CCAAGCTGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGGCCTGGGAAAAAGAACAACAAAGTGCCTGTAAACGATTTTCAGCGAAATTCCACACATCAAACAAGGTAGATACACTCAAGGTAGGTCTTTTTAATTGCTTACTAGAAAATGTATTGTTTGCAGCATTTTATAAACAGATTTTAACATTTATTTGTCTATGTTTTCACCAGAAGATTATTTCTATACATTCACGTGCTGATATTAATCGTTCAATCAAAATTATCCAATAGGCCAACAG] [+] EMBL CNS09OPY [TTGAATAAAGCCACCAATTTCGTTTTATTAAATGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGA CCAAGCTGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGGCCTGGGAAAAAGAACAACAAAGTGCCTGTAAACGATTTTCAGCGAAATTCCACACATCAAACAAGGTAGATACACTCAAGGTAGGTCTTTTTAATTGCTTACTAGAAAATGTATTGTTTGCAGCATTTTATAAACAGATTTTAACATTTATTTGTCTATGTTTTCACCAGAAGATTATTTCTATACATTCACGTGCTGATATTAATCGTTCAATCAAAATTATCCAATAGGCCAACAG] [-] EMBL BM593721 [ TTATTAAATGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTTCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCACGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCTGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTCGGTTTGTAATCAGGCATTGGCAGCTTCTGTCCGTTGTCTAGATGAGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACcgg ] consensusID : consensus_7154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [GNCCTGCNANCANCGCTCTGTTTGNGTNTGTTGTTCGTNTCGGNTNCTNGTCGTNGTTGCTATNTGNGTCTGGTGNNGCTGNTGTTGTGTGTGATTGTTGTTTTNGTGGTGTTGGGGAAGTAAANGCCCACCAATGTGTCCGTGNTGTTATTTGAAATGGTTCTAATACGTANGGGGGATACTAGTGCGAGTAACGAGTGCAATCTTAACACATTCGANAAAATCCTGTCTGTCGTTCTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATAGTCGCGCCATGTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGACCGATCGTCGCCAAGAATATCGATATAATCGTTCTGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTGCAATTTAAACCTGCG] [-] EMBL AL933659 [GNCCTGCNANCANCGCTCTGTTTGNGTNTGTTGTTCGTNTCGGNTNCTNGTCGTNGTTGCTATNTGNGTCTGGTGNNGCTGNTGTTGTGTGTGATTGTTGTTTTNGTGGTGTTGGGGAAGTAAANGCCCACCAATGTGTCCGTGNTGTTATTTGAAATGGTTCTAATACGTANGGGGGATACTAGTGCGAGTAACGAGTGCAATCTTAACACATTCGANAAAATCCTGTCTGTCGTTCTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATAGTCGCGCCATGTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGACCGATCGTCGCCAAGAATATCGATATAATCGTTCTGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTGCAATTTAAACCTGCG] consensusID : consensus_7154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [GTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTTCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCTTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCTGAAGGAAGGGAATGAAAACCTTTTTCCAATTAAACAAACATCTGTTTTTATCAAACTTTGTTACAAAACCACTAACCAATTCACGTTGTTTCGGACGCGTGGGCGG] [-] EMBL BM626566 [GTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTTCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCTTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCTGAAGGAAGGGAATGAAAACCTTTTTCCAATTAAACAAACATCTGTTTTTATCAAACTTTGTTACAAAACCACTAACCAATTCACGTTGTTTCGGACGCGTGGGCGG] consensusID : consensus_7154#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [TGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGGCCGGACGCGTGGGCGG] [-] EMBL BM623491 [TGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGGCCGGACGCGTGGGCGG] [-] EMBL BM612417 [ GTAGGAGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTTCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCTTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGcgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7154#0 ------------------------------------------------------------ consensus_7154#3 ------------------------------------------------------------ consensus_7154#2 ------------------------------------------------------------ consensus_7154#1 GNCCTGCNANCANCGCTCTGTTTGNGTNTGTTGTTCGTNTCGGNTNCTNGTCGTNGTTGC 60 consensus_7154#0 ------------------------------------------------------------ consensus_7154#3 ------------------------------------------------------------ consensus_7154#2 ------------------------------------------------------------ consensus_7154#1 TATNTGNGTCTGGTGNNGCTGNTGTTGTGTGTGATTGTTGTTTTNGTGGTGTTGGGGAAG 120 consensus_7154#0 -----TTGAATAAAGCCACCAATTTCGTTTTATTAAATGTCTATAGTA------GGGGAT 49 consensus_7154#3 -------------------------------------TGTCTATAGTA------GGGGAT 17 consensus_7154#2 ------------------------------------------------------------ consensus_7154#1 TAAANGCCCACCAATGTGTCCGTGNTGTTATTTGAAATGGTTCTAATACGTANGGGGGAT 180 consensus_7154#0 ACTAGTGCGAGTAACGA-TGCAATCTTA-CACATTCGAAAA--TCCTGTCT-TCGTT-TT 103 consensus_7154#3 ACTAGTGCGAGTAACGA-TGCAATCTTA-CACATTCGAAAA--TCCTGTCT-TCGTT-TT 71 consensus_7154#2 ----------GTAACGA-TGCAATCTTA-CACATTCGAAAA--TCCTGTCT-TCGTT-TT 44 consensus_7154#1 ACTAGTGCGAGTAACGAGTGCAATCTTAACACATTCGANAAAATCCTGTCTGTCGTTCTT 240 ******* ********** ********* ** ******** ***** ** consensus_7154#0 CCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATA-TCGCGCCAT-TTCGTT 161 consensus_7154#3 CCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATA-TCGCGCCAT-TTCGTT 129 consensus_7154#2 TCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATA-TCGCGCCAT-TTCGTT 102 consensus_7154#1 CCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATAGTCGCGCCATGTTCGTT 300 ****************************************** ********* ****** consensus_7154#0 GGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGA 221 consensus_7154#3 GGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGA 189 consensus_7154#2 GGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGA 162 consensus_7154#1 GGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGA 360 ************************************************************ consensus_7154#0 TACTCG-TTGCCGGACACACCGCGGA-CCAAGCTGGCACAGAGTACAGCACACGGGTAGG 279 consensus_7154#3 TACTCG-TTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGG 248 consensus_7154#2 TACTCG-TTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGG 221 consensus_7154#1 TACTCGGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGG 420 ****** ******************* ****** ************************** consensus_7154#0 ATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTT 339 consensus_7154#3 ATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTT 308 consensus_7154#2 ATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTT 281 consensus_7154#1 ATGGA-CCGATCGTCGCCAAGAATATCGATATAATCGTTCTG-CCGAACAGTGCACGTTT 478 ***** ************************************ ***************** consensus_7154#0 CTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAG 399 consensus_7154#3 CTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAG 368 consensus_7154#2 CTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAG 341 consensus_7154#1 CTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAG 538 ************************************************************ consensus_7154#0 ATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGG 459 consensus_7154#3 ATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGG 428 consensus_7154#2 ATGGGGTAGAAGACCCCTTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGG 401 consensus_7154#1 ATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGG 598 ***************** ****************************************** consensus_7154#0 TCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCA 519 consensus_7154#3 TCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCA 488 consensus_7154#2 TCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCA 461 consensus_7154#1 TCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCA 658 ************************************************************ consensus_7154#0 GAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGC--AATTC 577 consensus_7154#3 GAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGC--AATTC 546 consensus_7154#2 GAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCTGAAGGA 521 consensus_7154#1 GAAGCATTT-GCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGT-GC------- 709 ********* **************************************** ** consensus_7154#0 ACGTTGTTTTGGCCT--GGGAAAAAGAACAACAAAGTGCCTGTAAACGATTTTCAGCGAA 635 consensus_7154#3 ACGTTGTTTTGGCC---GGACGCGTGGGCGG----------------------------- 574 consensus_7154#2 AGGGAATGAAAACCTTTTTCCAATTAAACAAACATCTGTTTTTAT-CAAACTTTGTTACA 580 consensus_7154#1 ----AATTTAAACCTGCG------------------------------------------ 723 * ** consensus_7154#0 ATTCCACACATCAAACAAGGTAGATAC--ACTCAAGGTAGGTCTTTTTAATTGCTTACTA 693 consensus_7154#3 ------------------------------------------------------------ consensus_7154#2 AAACCACTAACCAATTCACGTTGTTTCGGACGCGTGGGCGG------------------- 621 consensus_7154#1 ------------------------------------------------------------ consensus_7154#0 GAAAATGTATTGTTTGCAGCATTTTATAAACAGATTTTAACATTTATTTGTCTATGTTTT 753 consensus_7154#3 ------------------------------------------------------------ consensus_7154#2 ------------------------------------------------------------ consensus_7154#1 ------------------------------------------------------------ consensus_7154#0 CACCAGAAGATTATTTCTATACATTCACGTGCTGATATTAATCGTTCAATCAAAATTATC 813 consensus_7154#3 ------------------------------------------------------------ consensus_7154#2 ------------------------------------------------------------ consensus_7154#1 ------------------------------------------------------------ consensus_7154#0 CAATAGGCCAACAG 827 consensus_7154#3 -------------- consensus_7154#2 -------------- consensus_7154#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||