These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 975 fasta sequence [CCGCCCACGCGTCCGAAACGCAAAACAGCTCAATCAGCTCACCTGCTAGCGCACTCAAATGTGTTCGAATGCGCATTAGCACCACAGC-ACTGCAGCTTTGTTTCAGCGTC-TTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG-ACGGACAAGGAGTCGATGCGCG-TGACGCTCAAGAGCAGCGCCAAGGGCGC-GACC-GTG-GCCGGCTCGACCACCTTTCTCGGC-GGGC-TGCTGGCCGGCCCGGTCGGCCTGTTCG-TGGGC-GGTGCGGTC-GGC-GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC-GGCACGACCTGACGGTGCAG-GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG-ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAG-TGGTAGCTTAGATTAATC-GGTAGGGAATTGACGAAACCTCCTGGGTTGGTGCCCTTTGTCCAATGGTTCAATTCANTTGTCAGTTAAGAATATAAAAGGCCTCTGCTGAATGGGGCACTTACGTAACAAAAGANCACGACAGATAAGTAGTTAAAGGCATTCGGAGANAGGTTAGCCGGTTGGGGNCTTTNGGNTAGGCCGCCGTGGGGGAAGGAACGNCCNAGAGNGTTANACCAGTTCTCCANNAAAAGTATAANTTNTCCCGGGGACCTTANGCAACATAACNAGCATCCANACNACACGACCAGTANGCATCGACCCAGGGGAATTTGNTC] [+] EMBL BM590886 [CCGCCCACGCGTCCGAAACGCAAAACAGCTCAATCAGCTCACCTGCTAGCGCACTCAAATGTGTTCGAATGCGCATTAGCACCACAGC ACTGCAGCTTTGTTTCAGCGTCTTTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG ACGGACAAGGAGTCGATGCGCG TGACGCTCAAGAGCAGCGCCAAGGGCGC GACC GTC GCCGGCTCGACCACCTTTCTCGGC GGGC TGCTGGCCGGCCCGGTCGGCCTGTTCG TGGGC GGTGCGGTC GGC GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC GGCACGACCTGACGGTGCAG GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGT CACACACACACACACACTCTCTGATATGGTGCGGTTAG TGGTAGCTTAGATTAATC GGTAGGGAATTGACGAAc ] [+] EMBL BX621767 [ ggGCAANACAGCTCAATCAGCTCACCTGCTAGCGCACTCAAATGTGTTCGAATGCGCATTAGCACCACAGC ACTGCAGCTTTGTTTCAGCGTC TTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG ACGGACAAGGAGTCGATGCGCG TGACGCTCAAGAGCAGCGCCAAGGGCGC GACC GTG GCCGGCTCGACCACCTTTCTCGGC GGGC TGCTGGCCGGCCCGGTCGGCCTGTTCG TGGGC GGTGCGGTC GGC GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC GGCACGACCTGACGGTGCAG GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGC ] [+] EMBL BX628401 [ ACCTGCTAGCGCACTCAAATGTGTTCGAATGCGCATTAGCACCACAGC ACTGCAGCTTTGTTTCAGCGTC TTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG ACGGACAAGGAGTCGATGCGCG TGACGCTCAAGAGCAGCGCCAAGGGCGC GACC GTG GCCGGCTCGACCACCTTTCTCGGC GGGC TGCTGGCCGGCCCGGTCGGCCTGTTCG TGGGC GGTGCGGTC GGC GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC GGCACGACCTGACGGTGCAG GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTT ] [+] EMBL AL933806 [ aAAATGTGTTCGAATGCGCATTAGCACCACAGCTACTGCAGCTTTGTTTCAGCGTC TTTTTTCCGTCCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTGTACGGACAAGGAGTCGATGCGCGTTTACGCTCAAGAGCAGCGCCAAGGGCGCTGACCTGTGTGCCGGCTCGA CACCTTTCTCGGCTGGGCTTGCTGGCCGGCCCGGTCGGCCTGTTCGTTGGGCNGGTGCGGTCTGGCTGGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCCTGGCACGACCTGACGGTGCAGTGAGCAGGAGCTGGTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCGTACCGATCTGGTGATGGTGCTGTCCCTGCTGACGG CAACGGGGCCG CCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGNTGGTAGCTTAGATTAATCGGGTAGGGAATTGACGAAACCTCCTGGGTTGGTGCCCTTTGTCCAATGGTTCAATTCANTTGTCAGTTAAGAATATAAAAGGCCTCTGCTGAATGGGGCACTTACGTAACAAAAGANCACGACAGATAAGTAGTTAAAGGCATTCGGAGANAGGTTAGCCGGTTGGGGNCTTTNGGNTAGGCCGCCGTGGGGGAAGGAACGNCCNAGAGNGTTANACCAGTTCTCCANNAAAAGTATAANTTNTCCCGGGGACCTTANGCAACATAACNAGCATCCANACNACACGACCAGTANGCATCGACCCAGGGGAATTTGNTC] [+] EMBL BX617381 [ TCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTGGCCACGCTG ACGGACAAGGAGTCGATGCGCG TGACGCTCAAGAGCAGCGCCAAGGGCGC GACC GTG GCCGGCTCGACCACCTTTCTCGGC GGGC TGCTGGCCGGCCCGGTCGGCCTGTTCG TGGGC GGTGCGGTC GGC GGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCGGTCAGCGAGATCATCC GGCACGACCTGACGGTGCAG GAGCAGGAGCGGCTCAAGCAGCGGATCGTGTCCGCGCTGTCCGAATTCCACGCG ACCGATCTGGTGATGGTGCTGTCCCTGCTGACGGCCAACGGGGCCGCCCAGAAGGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAG TGGTAGCTTAGATTAATC GGTAGGGAATTGACG AACCT CTGG T GTG CCTTT TTCAAT GTT AATT A TT T A TTAAG ATATAAA GCTTGTGATGgg ] consensusID : consensus_7156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [TCCGCCCAGAAGCGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACCGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGTGGTAGCTTAGATTAATCGGTAGGGAATTGACGAACCTCTGGTGTGCCTTTTTCAATGTTAATTATTTATTAAGATATAAAGCTTGTGATGGGATTTTGTAACACAAAAAAAAAGATAATAGTTAAGCATCGAAAGTAGCGTGGCTTGTGGCGCGGGAGAGCAAAATAAATTTCAAATTATTCGGGCTAGAAGCAACCGACTGTTAGCTAAAAAAAATATNCACAANAAGGCAGGCATGTTGCG] [-] EMBL BX466817 [TCCGCCCAGAAGCGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAACCGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAAGTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGTGGTAGCTTAGATTAATCGGTAGGGAATTGACGAACCTCTGGTGTGCCTTTTTCAATGTTAATTATTTATTAAGATATAAAGCTTGTGATGGGATTTTGTAACACAAAAAAAAAGATAATAGTTAAGCATCGAAAGTAGCGTGGCTTGTGGCGCGGGAGAGCAAAATAAATTTCAAATTATTCGGGCTAGAAGCAACCGACTGTTAGCTAAAAAAAATATNCACAANAAGGCAGGCATGTTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7156#0 CCGCCCACGCGTCCGAAACGCAAAACAGCTCAATCAGCTCACCTGCTAGCGCACTCAAAT 60 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GTGTTCGAATGCGCATTAGCACCACAGCACTGCAGCTTTGTTTCAGCGTCTTTTTTCCGT 120 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 CCGCGTCTCAGCCGTCCTAAAGCCATGCCGATCAATACCCGCGAGCTGCTCGATGCCGTG 180 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GCCACGCTGACGGACAAGGAGTCGATGCGCGTGACGCTCAAGAGCAGCGCCAAGGGCGCG 240 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 ACCGTGGCCGGCTCGACCACCTTTCTCGGCGGGCTGCTGGCCGGCCCGGTCGGCCTGTTC 300 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GTGGGCGGTGCGGTCGGCGGGCTGGTCGCGTACGCCATGACCAACAATCAGTTCAAACCG 360 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 GTCAGCGAGATCATCCGGCACGACCTGACGGTGCAGGAGCAGGAGCGGCTCAAGCAGCGG 420 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 ATCGTGTCCGCGCTGTCCGAATTCCACGCGACCGATCTGGTGATGGTGCTGTCCCTGCTG 480 consensus_7156#1 ------------------------------------------------------------ consensus_7156#0 ACGGCCAACGGGGCCGCCCAGAAG-GCGGTCCTCACGACGGTCGTCACCTTTCTAACGAA 539 consensus_7156#1 ------------TCCGCCCAGAAGCGCGGTCCTCACGACGGTCGTCACCTTTCTAACGAA 48 *********** *********************************** consensus_7156#0 C-GAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAA 598 consensus_7156#1 CCGAGATGCGCATGCAAATCATCGACTGACCCCCCTGTGGCGCACACACTGCTTGCCTAA 108 * ********************************************************** consensus_7156#0 GTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGTGGTAGCTTAGATTAATC 658 consensus_7156#1 GTCACACACACACACACACACTCTCTGATATGGTGCGGTTAGTGGTAGCTTAGATTAATC 168 ************************************************************ consensus_7156#0 GGTAGGGAATTGACGAAACCTCCTGGGTTGGTGCCCTTTGTCCAATGGTTCAATTCANTT 718 consensus_7156#1 GGTAGGGAATTGACGAA-CCTC------TGGTGTGCCTTTTTCAATG-------TTAATT 214 ***************** **** ***** * ** * ***** * * ** consensus_7156#0 GTCAGTTAAGAATATAAAAGGCCTCTGCTGAATGGGGCACTTACGTAACAAAAGANCACG 778 consensus_7156#1 ATTTATTAAG---ATATAAAGCTTGTG----ATGGGA---TTTTGTAACACAAAAA---A 261 * ***** *** ** ** * ** ***** ** ****** ** * consensus_7156#0 ACAGATAAGTAGTTAAAGGCATTCGGAGANAGGTTAGCCGGTTGGGGNCTTTNGGNTAGG 838 consensus_7156#1 AAAGATAA-TAGTTAA--GCAT-CGAAAGTAGCGTGGCTTGT--GGCGCGGGAGAGCAAA 315 * ****** ******* **** ** * ** * ** ** ** * * * consensus_7156#0 CCGCCGTGGGGGAAGGAACGNCCNAGAGNGTTANACCAGTTCTCCANNAAAAGTATAANT 898 consensus_7156#1 ATAA-ATTTCAAATTATTCGGGCTAGAAGCAACCGACTGTTAGCTAAAAAAAATATNCAC 374 * * ** * *** * *** * * **** *** consensus_7156#0 TNTCCCGGGGACCTTANGCAACATAACNAGCATCCANACNACACGACCAGTANGCATCGA 958 consensus_7156#1 AANAAGGCAGGCATGTTGCG---------------------------------------- 394 * * * * ** consensus_7156#0 CCCAGGGGAATTTGNTC 975 consensus_7156#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||