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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1320 fasta sequence
[GAGTAAAATTTGCAAAAAAAAAACGACAGTCGGAAACAAGATCACCCAAAATAAAAATGGCATGTTTAAGGGAAAAAGAAATTGTTAAGAAAAACAAAAACACACGTACACACTAGGGTAACAAATATATAAAAAACAAACAAACAAACAAAAAGGACAAACTCACATAAAATACACTAACAAAGCAAAACAAACAAACAAATAGGACAGAGACACATAAACAAGTACATTAACAAAGTAAAACAAACCAGACAGGACAACCACATAAACAAATACACTAAACAAAACAAACAAATTGCAATTAATTGTGATGCACTTGTGGTGGGAAATTGTGGAAGGGGAAGAATTGTTGTAAACACGGGT----AGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAGGATAGGGAAGAAACTGGTTAAAGCTGTGCGGTTTAGAATGATGCTAGACAGTTTTTGC--TCGTAGGGTAATGAGTAAGGACCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCACGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCTGTATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTTTTTCACGCCTGCTTAGATCTTTTATTTGGGGAGTGGTAGTGCATTTGGAGGACGGCGGAGAACAGTGAAGCCACACACTTTTTGAAAGTTTCAACTTTTGCAGTCAATTTTGTGCATATATAGGAAGAGTAGTAGAATAGTACGTTAACACATGGTGTTAACACTTTGTAATACTCTCAATCTTTGGAATGTATGCAACACACGGGTGTCTGTGTGTGTGTGATTTTGTGTAGCATGTTCTATTAAGGGGTTTGGAAAGTAGAGAAGAGTATGCACTTGTAAAGCCGAAGGGTCTTGCAACGAAAGAAGCTTTCCTTTTTAAATCTTAATACAGCCAAGCGACGTGTGATAATACGCGAAGGGTTTGTTCTACTTTGCTTTTGGGCATTGTTTTATAACGATAAAAATCCATAAAACAATAGGCACTGTTTGTTGTCTTTTATCCTTCCTCTATATTGAGTGACACACAGAAGGAGAGAGTGGCACTTTCCTTTCGTGCAGTACTTTTAACCGCTTCCTTTGATTGCACAGCAGCAACATGCCAAACCGAATGTTCTTCGTCTCTGTGGTTACTGTTTTTTTTGTCAACCACCGAAAGGATGTTGTTCTCGTATCTTTGTACAATGGGAGCTACTACTGCGGCTGGTTCATACAAATGATTGTTGTGATAAAAT]
[+] EMBL BX625728 [GAGTAAAATTTGCAAAAAAAAAACGACAGTCGGAAACAAGATCACCCAAAATAAAAATGGCATGTTTAAGGGAAAAAGAAATTGTTAAGAAAAACAAAAACACACGTACACACTAGGGTAACAAATATATAAAAAACAAACAAACAAACAAAAAGGACAAACTCACATAAAATACACTAACAAAGCAAAACAAACAAACAAATAGGACAGAGACACATAAACAAGTACATTAACAAAGTAAAACAAACCAGACAGGACAACCACATAAACAAATACACTAAACAAAACAAACAAATTGCAATTAATTGTGATGCACTTGTGGTGGGAAATTGTGGAAGGGGAAGAATTGTTGTAAACACGGGT AGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAGGATAGGGAAGAAACTGGTTAAAGCTGTGCGGTTTAGAATGATGCTAGACAGTTTTTGC TCGTAGGGTAATGAGTAAGGACCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCACGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCTGTATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTTTTTCACGCCTGCTTAGATCTTTTATTTGGGGAGTGGTAGTGCATTTGGAGGACGGCGGAGAACAGTGAAGCCACACACTTTTTGAAAGTTTCAACTTTTGCAGTCAATTTTGTGCATATATAGGAAGAGTAGTAGA ]
[+] EMBL BX621333 [ ATGCACTTGTGGTGGGAAATTGTGGGAGGGGAAGAATTGTTGTAAACACGGGT AGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAGGATAGGGAAGAAACTGGTTAAAGCTGTGCGGTTTAGTATGATGCTAGACAGTTTTTGC TCGTAGGGTAATGAGTAAGGACCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCACGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCTGTATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTTTTTCACGCCTGCTTAGATCTTTTATTTGGGGAGTGGTAGTGCATTTGGAGGACGGCGGAGAACAGTGAAGCCACACACTTTTTGAAAGTTTCAACTTTTGCAGTCAATTTTGTGCATATATAGGAAGAGTAGTAGAATAGTACGTTAACACATGGTGTTAACACTTTGTAATACTCTCAATCTTTGGAATGTATGCAACACACGGGTGTCTGTGTGTGTGTGATTTTGTGTAGCATGTTCTATTAAGGGGTTTGGAAAGTAGAGAAGAGTATGCACTTG ]
[+] EMBL BM628887 [ ccgAAACACGGGTAGAGAGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAGGATAGGGAAGAAACTGGTTAAAGCTGTGCGGTTTAGAATGATGCTAGACAGTTTTTGC TCGTAGGGTAATGAGTAAGGACCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCACGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCTGTATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTTTTTCACGCCTGCTTAGATCTTTTATTTGGGGAGTGGTAGTGCATTTGGAGGACGGCGGAGAACAGTGAAGCCACACACTTTTTGAAAGTTTCAACTTTTGCAGTCAATTGTGTGCATATATAGGAAGAGTAGTAGAATAGTACGTTAACACATGGTGTTAACACTTTGT ]
[+] EMBL BM648061 [ ccgCACGGGT AGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAAGATAGGGAAGAAACTGGTTAAAGCTGTGCGGTTTAGAATGATGCTAGACAGTTTTTGCAGTCGTAGGGTAATGAGTAAGGACCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCACGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCTGTATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTTTTTCTCGCCTGCTTAGATCTTTTCTTTGGGGAGTGGTAGTGCATTTGGAGGACGGCGGAGAACAGTGAAGCCACACACTTTTTGAAAGTTTCAACTTTTGCAGTCAATTTTGTGCATATATAGGAAGAGTAGTAGAATAGTACGTTAACACATGGTGTTAACACTTTGTAATACTCTCAATCTTTGGAATGTATGCAACACACGGGTGTCTGTGTGTGTGTGATTTTGTGTAGCATGTTCTATTAAGGGGTTTGGAAAGTAGAGAAGAGTATGCACTTGTAAAGCCGAAGGGTCTTGCAACGAAAGAAGCTTTCCTTTTT ]
[+] EMBL BM589866 [ ccgGTGGTAGTGCATTTGGAGGACGGCGGAGAACAGTGAAGCCACACACTTTTTGAAAGTTTCAACTTTTGCAGTCAATTTTGTGCATATATAGGAAGAGTAGTAGAATAGTACGTTAACACATGGTGTTAACACTTTGTAATACTCTCAATCTTTGGAATGTATGCAACACACGGGTGTCTGTGTGTGTGTGATTTTGTGTAGCATGTTCTATTAAGGGGTTTGGAAAGTAGAGAAGAGTATGCACTTGTAAAGCCGAAGGTTCTTGCAACGAAAGAAGCTTTCCTTTTTAAATCTTAATACAGCCAAGCGACGTGTGATAATACGCGAAGGGTTTGTTCTACTTTGCTTTTGGGCATTGTTTTATAACGATAAAAATCCATAAAACAATAGGCACTGTTTGTTGTCTTTTATCCTTCCTCTATATTGAGTGACACACAGAAGGAGAGAGTGGCACTTTCCTTTCGTGCAGTACTTTTAACCGCTTCCTTTGATTGCACAGCAGCAACATGCCAAACCGAATGTTCTTCGTCTCTGTGGTTACTGTTTTTTTTGTCAACCACCGAAAGGATGTTGTTCTCGTATCTTTGTACAATGGGAGCTACTACTGCGGCTGGTTCATACAAATGATTGTTGTGATAAAAT]
consensusID : consensus_7158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[GAATTGCCCCGAGGTTAAGAATGTTGTAACACGGGTAGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAACGATAGNGGAACGAAACTGGTTAAAGCTGTGCGGTTTAGAATGATGCTAGACAGTTTTTGCAGTCGTAGGGTAATGAGTAAGGACCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCACGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCTGGTATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTTATTNCTCGCCTGCTTAGATCTTTTCTTTGGGGCAGCTGGTAGTGCACTTTGGAGGACGGCGGAGAACAGTGAAGCCACACACTTTNNCNGACCACGCTNTCTCACACTCTCTCTGCCACCCTCCACACCTCTCNNGCTGCCACTACTACTACCCGCACACGCANGCTACCCTACCCACACTACGCTACCGCCTCCACACCCACCCACCTGCGCCTGCCTTAAACCACCCTCTCTGCNNANCACCTAACCCTTCCCTCAACTCCTNCTCGGACACTGCCTACCTGCCACCANACCCAGCGGCCTGCTCCTGCTGCTGTGC]
[+] EMBL AL934474 [GAATTGCCCCGAGGTTAAGAATGTTGTAACACGGGTAGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAACGATAGNGGAACGAAACTGGTTAAAGCTGTGCGGTTTAGAATGATGCTAGACAGTTTTTGCAGTCGTAGGGTAATGAGTAAGGACCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCACGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCTGGTATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTTATTNCTCGCCTGCTTAGATCTTTTCTTTGGGGCAGCTGGTAGTGCACTTTGGAGGACGGCGGAGAACAGTGAAGCCACACACTTTNNCNGACCACGCTNTCTCACACTCTCTCTGCCACCCTCCACACCTCTCNNGCTGCCACTACTACTACCCGCACACGCANGCTACCCTACCCACACTACGCTACCGCCTCCACACCCACCCACCTGCGCCTGCCTTAAACCACCCTCTCTGCNNANCACCTAACCCTTCCCTCAACTCCTNCTCGGACACTGCCTACCTGCCACCANACCCAGCGGCCTGCTCCTGCTGCTGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7158#0 GAGTAAAATTTGCAAAAAAAAAACGACAGTCGGAAACAAGATCACCCAAAATAAAAATGG 60
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 CATGTTTAAGGGAAAAAGAAATTGTTAAGAAAAACAAAAACACACGTACACACTAGGGTA 120
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 ACAAATATATAAAAAACAAACAAACAAACAAAAAGGACAAACTCACATAAAATACACTAA 180
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 CAAAGCAAAACAAACAAACAAATAGGACAGAGACACATAAACAAGTACATTAACAAAGTA 240
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 AAACAAACCAGACAGGACAACCACATAAACAAATACACTAAACAAAACAAACAAATTGCA 300
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 ATTAATTGTGATGCACTTGTGGTGGGAAATTGTGGAAGGGGAAGAATTGTTGTAAACACG 360
consensus_7158#1 --------------------------GAATTGCCCCGAGGTTAAGAATGTTGTAA-CACG 33
***** ** * * ******** ****
consensus_7158#0 GGTAGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAG-GATAGGGAA--GAAACTGGTTAA 417
consensus_7158#1 GGTAGAGAGAGAGTGGTGAAGTGTTGTAGTAGGGAACGATAGNGGAACGAAACTGGTTAA 93
*********************************** ***** * * ************
consensus_7158#0 AGCTGTGCGGTTTAGAATGATGCTAGACAGTTTTTGC--TCGTAGGGTAATGAGTAAGGA 475
consensus_7158#1 AGCTGTGCGGTTTAGAATGATGCTAGACAGTTTTTGCAGTCGTAGGGTAATGAGTAAGGA 153
************************************* *********************
consensus_7158#0 CCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCA 535
consensus_7158#1 CCATTCCCCCAAACTCATAAGTTTATGTATAATGCACACTTACACTCACACACACGAGCA 213
************************************************************
consensus_7158#0 CGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCT 595
consensus_7158#1 CGCCTGAAACTACTCGTAATGGTCGAAAGTGCATCTGTCGAATTTTATCTTTAACAACCT 273
************************************************************
consensus_7158#0 G-TATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTT-TTTCACG 653
consensus_7158#1 GGTATGTGTATGTTGCTGCACAGATAATTGTATGTCTCTCTCACTCACTCTTATTNCTCG 333
* ************************************************** ** * **
consensus_7158#0 CCTGCTTAGATCTTTTATTTGGGGAG--TGGTAGTGCA-TTTGGAGGACGGCGGAGAACA 710
consensus_7158#1 CCTGCTTAGATCTTTTCTTTGGGGCAGCTGGTAGTGCACTTTGGAGGACGGCGGAGAACA 393
**************** ******* ********** *********************
consensus_7158#0 GTGAAGCCACACACTTTTTGAAAGTTTCAACTTTTGCAGTCAATTTTGTGCATATATAGG 770
consensus_7158#1 GTGAAGCCACACACTTTNNCNGACCACGCTNTCTCACACTC---TCTCTGC-CACCCTCC 449
***************** * * * ** ** * * *** *
consensus_7158#0 AAGAGTAGTAGAATAGTACGTTAACACATGGTGTTAACACTTTGTAATACTCTCAATCTT 830
consensus_7158#1 ACACCTCTCNNGCTGCCACTACTACTACCCGCACACGCANGCTACCCTACCCACA--CTA 507
* * * ** ** * ** * *** * ** **
consensus_7158#0 TGGAATGTATGCAACACACGGGTGTCTGTGTGTGTGTGATTTTGTGTAGCATGTTCTATT 890
consensus_7158#1 CGCTACCGCCTCCACACCCACCCACCTGCGCCTGC-----CTTAAACCACCCTCTCTGCN 562
* * * **** * *** * ** ** * ***
consensus_7158#0 AAGGGGTTTGGAAAGTAGAGAAGAGTATGCACTTGTAAAGCCGAAGGGTCTTGCAACGAA 950
consensus_7158#1 NANCA-CCTAACCCTTCCCTCAACTCCTNCTCGGACACTGCCTA-----CCTGCCACCAN 616
* * * * * * * * *** * * *** ** *
consensus_7158#0 AGAAGCTTTCCTTTTTAAATCTTAATACAGCCAAGCGACGTGTGATAATACGCGAAGGGT 1010
consensus_7158#1 ACCCAGCGGCCTGCTCCTGCTGCTGTGC-------------------------------- 644
* *** * * *
consensus_7158#0 TTGTTCTACTTTGCTTTTGGGCATTGTTTTATAACGATAAAAATCCATAAAACAATAGGC 1070
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 ACTGTTTGTTGTCTTTTATCCTTCCTCTATATTGAGTGACACACAGAAGGAGAGAGTGGC 1130
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 ACTTTCCTTTCGTGCAGTACTTTTAACCGCTTCCTTTGATTGCACAGCAGCAACATGCCA 1190
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 AACCGAATGTTCTTCGTCTCTGTGGTTACTGTTTTTTTTGTCAACCACCGAAAGGATGTT 1250
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 GTTCTCGTATCTTTGTACAATGGGAGCTACTACTGCGGCTGGTTCATACAAATGATTGTT 1310
consensus_7158#1 ------------------------------------------------------------
consensus_7158#0 GTGATAAAAT 1320
consensus_7158#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||