These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1737 fasta sequence [CGCATCATGATTTCATGGGATAGATCTAGCAAATCGCGCAAAAAAACTATCACGAAACAAAACACACAAACACATAAACAAACAAATCGAAAATCGACTAACCGAAACGACAAACAAAACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGACCACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACGAAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGGAAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAAGGGTAATTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACACAATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGCAAGATCAGAGTTAGCAGCAGTCCCGCTTATGAGAGCATTACGGTATGTTTTCAACAGCCAAATCACCACAAACGAACGCTTGCAGCTATGGTCGATCGCATTCCAGCGCATCCATACCATCTCCTCCGTCGATCGTTCCTAGTCCTTTATTTATTAATGTTGATATGATGGTTAAAATATCAATGGGTGAGCGTGCTTTTCCCCGAAATAATCTGCCAGATACGTTTAGGGAAGTGCTTATCCTGTGCACTCCGCAGATGGGCTGTCCACCAGGGTCACGCCATCAGCACAGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAATGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAACGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGAACAAAATGCAATGTACTGCTGCGAAAAGTGATGCCAACT-CTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCCTTTACTGCCATGAACGGTTTTGACCGTTGCTGCGAAAAGGTTTACTTCTGCCGTACCGCTCCGTCCGTCTACCATACGCTACCGGTCAATGTGCATCACCATGTGAGGAGCAGCGACCAAACTGGTTGCATATNTTCCGGAATATGTGTAGCTAGGCCACCGGATACGGCAAAAAGTATGAAGTATACTNNCTTTCATCATCTACAAAATTTACTGCCAAGTTCATTTGTATCGAAATNTCTGTNGCTTGCTAACNACTGGCTGCTCGGGANNGCTCNGTAAANCTACCAAAACCAGTGTTCAAATTTAATAGGAACAAACAAACGTACAGCAATCACATTTTCGGAGCAGACGTTCACTAGCAAAGCTTTGTTTGCCCTATGCTTTACAGTAACTTTCAGCCTAAAGTAGCTAATGTATAAATGTATTCAGGTTCTCTTAGAAGACTGCCACCAAAACTGATCACAGCACTAACCGTACAAGTACGCTCCTTGTTTTGTACAGCAGGATCGACACTCGCACGGCGTACT] [+] EMBL BX605006 [CGCATCATGATTTCATGGGATAGATCTAGCAAATCGCGCAAAAAAACTATCACGAAACAAAACACACAAACACATAAACAAACAAATCGAAAATCGACTAACCGAAACGACAAACAAAACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGACCACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACGAAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGGAAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAAGGGTAATTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACACAATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGTTGCAAATTCTTACTAGCGTACTG ] [+] EMBL BX616093 [ TCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGCAAGATCAGAGTTAGCAGCAGTCCCGCTTATGAGAGCATTACGGTATGTTTTCAACAGCCAAATCACCACAAACGAACGCTTGCAGCTATGGTCGATCGCATTCCAGCGCATCCATACCATCTCCTCCGTCGATCGTTCCTAGTCCTTTATTTATTAATGTTGATATGATGGTTAAAATATCAATGGGTGAGCGTGCTTTTCCCCGAAATAATCTGCCAGATACGTTTAGGGAAGTGCTTATCCTGTGCACTCCGCAGATGGGCTGTCCACCAGGGTCACGCCATCAGCACAGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAATGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAACGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGAACAAAATGCAATGTACTGCTGCGAAAAGTGATGCCAACTCCTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCC ] [+] EMBL BX608204 [ GATGGTTAAAATATCAATGGGTGAGCGTGCTTTTCCCCGAAATAATCTGCCAGATACGTTTAGGGAAGTGCTTATCCTGTGCACTCCGCAGATGGGCTGTCCACCAGGGTCACGCCATCAGCACAGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAATGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAACGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGAACAAAATGCAATGTACTGCTGCGAAAAGTGATGCCAACT CTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCCTT ] [+] EMBL CF542116 [ CGCCATCAGCACAGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAATGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAACGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGAACAGAATGCAATGCACTGCTGCGAAAAGTGATGCCAACT CTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCCTTTACTGCCATGAACGGTTTTGACCGTTGCTGCGAAAAGGTTTACTTCTGCCGTACCGCTCCGTCCGTCTACCATACGCTACCGGTCAATGTGCATCACCATGTGAGGAGCAGCGACCAAACTGGTTGCATATNTTCCGGAATATGTGTAGCTAGGCCACCGGATACGGCAAAAAGTATGAAGTATACTNNCTTTCATCATCTACAAAATTTACTGCCAAGTTCATTTGTATCGAAATNTCTGTNGCTTGCTAACNACTGGCTGCTCGGGANNGCTCNGTAAANCT ] [+] EMBL BX625126 [ TCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAATAATTTGTTTTCCTTTTTGTTCTAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTATAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGG AATGCAATGTACTGCTGCGAAAAGTGATGCCAACT CTTTTTGAAACCTTTTTGAAGCTATAACGACACTCACTACCCTTTACTGCCATGGACGGTTTTGACCGTTGCTGCGAAAAGGTTTACTTCTGCCGTACCGCTCCGTCCGTCTACCATACGCTACCGGTCAATGTGCATCACCATGTGAGGAGCAGCGACCAAACTGGTTGCATATTTTCCGGAATATGTGTAGCAAGGCCACCGGATACGGCAAAAAGTATGAAGTATACTTCCTTTCACCAACTACAAAATTTACTGCCAAGTTCATTTGTATCGAAATTTCTGTTGCTTGCTAACCACTGGCTGCTCCGGAAGGCTCGGTAAAACTACCAAAACCAGTGTTCAAATTTAATAGGAACAAACAAACGTACAGCAATCACATTTTCGGAGCAGACGTTCACTAGCAAAGCTTTGTTTGCCCTATGCTTTACAGTAACTTTCAGCCTAAAGTAGCTAATGTATAAATGTATTCAGGTTCTCTTAGAAGACTGCCACCAAAACTGATCACAGCACTAACCGTACAAGTACGCTCCTTGTTTTGTACAGCAGGATCGACACTCGCACGGCGTACT] consensusID : consensus_7160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence [AATCGGCACGAGGTANNCAAAACACACAAACACATAAACANNACAAATCGAAAATCGACTAACCGAAACGACAAACAAAACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGACCACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACGAAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGGAAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAGAGGGTAATTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACACAATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGCAAGATCAGAGTTAGCAGCAGTCCCACGTATGAGAGCATTACGGTATGTTTGNGCAACAGCCAAATCANCCACAAAGCGGAACGCTTGCAGCTATGGTCGATCGGCATTCCAGGCGGCAATCCATAGCCNTCTTGCCCTCCGTNCGAATCGGNTTCCCTAGNTCCGTTNTAGTTTGGNAGTTGACAGTGGTTCGANTATGGAGTNGGTTTAAAATATCAAATGGGGTTGAGCGTGCTTTNTACCCCCGAAAA] [+] EMBL BX469674 [AATCGGCACGAGGTANNCAAAACACACAAACACATAAACANNACAAATCGAAAATCGACTAACCGAAACGACAAACAAAACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGACCACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACGAAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGGAAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAGAGGGTAATTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACACAATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGATACATTTAGTTAGCATAGGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGCAAGATCAGAGTTAGCAGCAGTCCCACGTATGAGAGCATTACGGTATGTTTGNGCAACAGCCAAATCANCCACAAAGCGGAACGCTTGCAGCTATGGTCGATCGGCATTCCAGGCGGCAATCCATAGCCNTCTTGCCCTCCGTNCGAATCGGNTTCCCTAGNTCCGTTNTAGTTTGGNAGTTGACAGTGGTTCGANTATGGAGTNGGTTTAAAATATCAAATGGGGTTGAGCGTGCTTTNTACCCCCGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7160#0 CGCATCATGATTTCATGGGATAGATCTAGCAAATCGCGCAAAAAAACTATCACG-AAACA 59 consensus_7160#1 -----------------------------------------AATCGGCACGAGGTANNCA 19 ** * * * * ** consensus_7160#0 AAACACACAAACACATAAACAAA-CAAATCGAAAATCGACTAACCGAAACGACAAACAAA 118 consensus_7160#1 AAACACACAAACACATAAACANNACAAATCGAAAATCGACTAACCGAAACGACAAACAAA 79 ********************* ************************************ consensus_7160#0 ACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGAC 178 consensus_7160#1 ACGAAACAAAATGTAAAGAATTAATTTAAAGACAAAAATACTAGTGCTGCACACATCGAC 139 ************************************************************ consensus_7160#0 CACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACG 238 consensus_7160#1 CACTAATCTGAGATTAGATGTAGTTGTAGTAACTCAAATTAAACGATTCGATAGCTGACG 199 ************************************************************ consensus_7160#0 AAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGG 298 consensus_7160#1 AAGAGCGTGGAAGAAATTCGTGGCTCCTCGCACACCAGCTAAGGGTAGATACAAGTTAGG 259 ************************************************************ consensus_7160#0 AAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAA-AGGGTAA 357 consensus_7160#1 AAGAAATATGTAAATAGTATTAAATTAAAACCCAAAGGGGAGCGCAAATGAAGAGGGTAA 319 **************************************************** ******* consensus_7160#0 TTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACAC 417 consensus_7160#1 TTGCTCAAAGAGCGCCAAGGATGCTCTCTTGAAGAAAGGGGAAAACGCGAACCCCAACAC 379 ************************************************************ consensus_7160#0 AATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGA 477 consensus_7160#1 AATTATCGGAAAGCATCTTTGCGAATGTAGTAGAAACTCGAAACCAGTGTCCTTCGTAGA 439 ************************************************************ consensus_7160#0 TACATTTAGTTAGCATAG-TTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGC 536 consensus_7160#1 TACATTTAGTTAGCATAGGTTGCAAATTCTTACTAGCGTACTGTAAAGTATGGAATGCGC 499 ****************** ***************************************** consensus_7160#0 AAGATCAGAGTTAGCAGCAGTCCCGCTTATGAGAGCATTACGGTATGTTTTC--AACAGC 594 consensus_7160#1 AAGATCAGAGTTAGCAGCAGTCCCACGTATGAGAGCATTACGGTATGTTTGNGCAACAGC 559 ************************ * *********************** ****** consensus_7160#0 CAAATCACC-ACAAAC--GAACGCTTGCAGCTATGGTCGATCG-CATTCCAG-CGC--AT 647 consensus_7160#1 CAAATCANCCACAAAGCGGAACGCTTGCAGCTATGGTCGATCGGCATTCCAGGCGGCAAT 619 ******* * ***** ************************* ******** ** ** consensus_7160#0 CCATA-CCATCTCCTCCGTCGATCGTTCCTAGTCCTTTATTTATTAATGTTGATATGATG 706 consensus_7160#1 CCATAGCCNTCTTGCCCTCCGTNCGAATCGGNTTCCCTAGN--TCCGTTNTAGTTTGGNA 677 ***** ** *** ** ** ** * * * ** * * * * ** consensus_7160#0 GTTAAAATATCAATGGGTGAGCGTGCTTTTCCCCGAAATAATCTGCCAGATACGTTTAGG 766 consensus_7160#1 GTTGA-----CAGTGGTT---CGANTATGGAGTNGGTTTAAAATATCAAATGGGGTT--G 727 *** * ** *** * ** * * *** * ** ** * ** * consensus_7160#0 GAAGTGCTTATCCTGTGCACTCCGCAGATGGGCTGTCCACCAGGGTCACGCCATCAGCAC 826 consensus_7160#1 AGCGTGCTT----TNTAC-CCCCGAAAA-------------------------------- 750 ****** * * * * *** * * consensus_7160#0 AGCAACGTGTGTGTTTGGCAAGTGTGCCCGCGTACGAGTGTCGTGTCGTATTGGCAGCAA 886 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 TGGTTCCGTTTTAACTGTAATTTATTGATATTTTAAAGTATGCTTTTCATATATACTGAA 946 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 CGAATGAACGACGATCGGCGGAGGATTTGACGACGGAATGTTAGTGACATATGTAATAAT 1006 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 AATTTGTTTTCCTTTTTGTTCCAGTGTTTTGTTCATCTGAAACACTTACTTGGTGTTGTA 1066 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 TAGTAGTTTGTTGGCCTGCGGGCGTAATACAAAAAGAAACGAGCGTTAGAGCGTCTTGGA 1126 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 ACAAAATGCAATGTACTGCTGCGAAAAGTGATGCCAACTCTTTTTGAAACCTTTTTGAAG 1186 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 CTATAACGACACTCACTACCCTTTACTGCCATGAACGGTTTTGACCGTTGCTGCGAAAAG 1246 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 GTTTACTTCTGCCGTACCGCTCCGTCCGTCTACCATACGCTACCGGTCAATGTGCATCAC 1306 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 CATGTGAGGAGCAGCGACCAAACTGGTTGCATATNTTCCGGAATATGTGTAGCTAGGCCA 1366 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 CCGGATACGGCAAAAAGTATGAAGTATACTNNCTTTCATCATCTACAAAATTTACTGCCA 1426 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 AGTTCATTTGTATCGAAATNTCTGTNGCTTGCTAACNACTGGCTGCTCGGGANNGCTCNG 1486 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 TAAANCTACCAAAACCAGTGTTCAAATTTAATAGGAACAAACAAACGTACAGCAATCACA 1546 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 TTTTCGGAGCAGACGTTCACTAGCAAAGCTTTGTTTGCCCTATGCTTTACAGTAACTTTC 1606 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 AGCCTAAAGTAGCTAATGTATAAATGTATTCAGGTTCTCTTAGAAGACTGCCACCAAAAC 1666 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 TGATCACAGCACTAACCGTACAAGTACGCTCCTTGTTTTGTACAGCAGGATCGACACTCG 1726 consensus_7160#1 ------------------------------------------------------------ consensus_7160#0 CACGGCGTACT 1737 consensus_7160#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||