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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 858 fasta sequence
[CCGATCGAGCAAAAACTCGCTCGCCACCCCCCTAGGGAAGCGTGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA--AAAAAAACATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCAGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGGGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGCCGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCGAGCAGGCTGTCACCCATCCGGACGGGCTGGCCGTGGTCGGTGCGCTGTACGAGGTCGGCGGCGATAAGGTGAAGCCGGGTGCGAAGTGGGCCGTACCGCTGCCAAAAATACGCCCCGCCGGCTCGACCACTACGCTGGANGGCGGGGCAGTGTTTAATCTGGATTCGGTGGCACCGGGCGGCTNCTGGCTGCGGTACTACTTCGTACGCCGGCAGCCTGAC]
[+] EMBL BM616801 [CCGATCGAGCAAAAACTCGCTCGCCACCCCCCTAGGGAAGCGTGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA AAAAAAACATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCAGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGGGCCGATAACGGGCGCGGCTCCGAGCAgc ]
[+] EMBL BX622349 [ GGGAAGCGTGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA AAAAAAACATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCAGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGGGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGCCGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCGAGCAGGCTGTCACCCATCCGGACGGGCTGGCCGTGGTCGGTGCGCTGTACGAGGTCGGCGGCGATAAGGTGAAGCCGGGTGCGAAGTGGGCCGTACCGCTGCCAAAAATACGCCCCGCCGGCTCGACCACTACGCTGGANGGCGGGGCAGTGTTTAATCTGGATTCGGTGGCACCGGGCGGCTNCTGGCTGCGGTACTACTTCGTACGCCGGCAGCCT ]
[+] EMBL BX628594 [ TTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA AAAAAAACATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCAGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGGGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGCCGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCG ]
[+] EMBL BX622249 [ CGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGAGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGCCGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCGACCAGGCCGTCACCCAGCCGGACGGGCTGGCCGTGGTCGGTGCGCTGTACGANGTCGGCGGCGATAAGGTGAAGCCGGGTGCGAAGTGGGCCGTGCCGCTGCCAAAAATACGCCCCGCCGGCTCGACCACTACGCTGGANGGCGGGGCAGTGTTTAATCTGGATTCGGTGGCACCGGGCGGCTNCTGGCTGCGGTACTAC TCGTACGCCGGCAGCCTGAC]
consensusID : consensus_7161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[AGAATCTGCCAGGAATCNAGCATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCATCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCATGCACTTCCACTTGGGGAGCCGATAACGGGCGCGGATCCGAGCAACAGTCAGACGGGGTGGCGTGGGCGGCGAGGCACACNAGGTCTACAAGCAAGAGTACCG]
[+] EMBL AL934570 [AGAATCTGCCAGGAATCNAGCATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCATCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCATGCACTTCCACTTGGGGAGCCGATAACGGGCGCGGATCCGAGCAACAGTCAGACGGGGTGGCGTGGGCGGCGAGGCACACNAGGTCTACAAGCAAGAGTACCG]
consensusID : consensus_7161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[CCGCCCACGCGTCCGGTCGAGTGAATCGAGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGAGCCGATAACGGGC]
[+] EMBL BM616968 [CCGCCCACGCGTCCGGTCGAGTGAATCGAGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGAGCCGATAACGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7161#1 -----------------------AGAATCTGCCAG---GAATCNAGCA-TTTGGGTTAGA 33
consensus_7161#2 ----------------CCGCCCACGCGTCCGGTCGAGTGAATCGAGCAATTTGGGTTAGA 44
consensus_7161#0 CCGATCGAGCAAAAACTCGCTCGCCACCCCCCTAGG--GAAGCGTGCAATTTGGGTTAGA 58
* * *** * *** ***********
consensus_7161#1 ATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAA 93
consensus_7161#2 ATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAA 104
consensus_7161#0 ATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA--AAAAAAA 116
*************************************** *** *** * *******
consensus_7161#1 CATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCC 153
consensus_7161#2 CATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCC 164
consensus_7161#0 CATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCA 176
************* ****************** **************************
consensus_7161#1 GCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCA 213
consensus_7161#2 GCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCA 224
consensus_7161#0 GCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCA 236
************************************************************
consensus_7161#1 CGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGG 273
consensus_7161#2 CGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGG 284
consensus_7161#0 CGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGG 296
************ ***********************************************
consensus_7161#1 TATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCA 333
consensus_7161#2 TATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCA 344
consensus_7161#0 TATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCA 356
********************************************* **************
consensus_7161#1 TGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAA 393
consensus_7161#2 TGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAA 404
consensus_7161#0 TGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAA 416
************************************************************
consensus_7161#1 CAATGGGCACACCGCC-AGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCT 452
consensus_7161#2 CAATGGGCACACCGCCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCT 464
consensus_7161#0 CAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCT 476
*** ************ ************ ******************************
consensus_7161#1 GATCGGTGGTCCGCATCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCATGCACTTCCAC 512
consensus_7161#2 GATCGGTGGTCCGC-TCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGC-TGCACTTCCAC 522
consensus_7161#0 GATCGGTGGTCCGC-TCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGC-TGCACTTCCAC 534
************** ********************************* ***********
consensus_7161#1 TTGGGGAGCCGATAACGGGCGCGGATCCGAGCAACAGTCAGACGGGGTGGCGTGGGCGGC 572
consensus_7161#2 T-GGGGAGCCGATAACGGGC---------------------------------------- 541
consensus_7161#0 T-GGGGGGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGC 593
* **** *************
consensus_7161#1 -GAGGCACACNAGGT---CTACAAGCAAGAGTACCG------------------------ 604
consensus_7161#2 ------------------------------------------------------------
consensus_7161#0 CGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCGAGCAGGCTGTCACCCA 653
consensus_7161#1 ------------------------------------------------------------
consensus_7161#2 ------------------------------------------------------------
consensus_7161#0 TCCGGACGGGCTGGCCGTGGTCGGTGCGCTGTACGAGGTCGGCGGCGATAAGGTGAAGCC 713
consensus_7161#1 ------------------------------------------------------------
consensus_7161#2 ------------------------------------------------------------
consensus_7161#0 GGGTGCGAAGTGGGCCGTACCGCTGCCAAAAATACGCCCCGCCGGCTCGACCACTACGCT 773
consensus_7161#1 ------------------------------------------------------------
consensus_7161#2 ------------------------------------------------------------
consensus_7161#0 GGANGGCGGGGCAGTGTTTAATCTGGATTCGGTGGCACCGGGCGGCTNCTGGCTGCGGTA 833
consensus_7161#1 -------------------------
consensus_7161#2 -------------------------
consensus_7161#0 CTACTTCGTACGCCGGCAGCCTGAC 858
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||