These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 524 fasta sequence [CCGCGGACGCGTGGGGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGATGCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAATAGTGGTGTACGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAAATGTAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTCGGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAACATATAATGATGCGATTTTAAATTAATAAAATAAAGTCTTACTTCTCGACAATTTC] [+] EMBL BM586710 [CCGCGGACGCGTGGGGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGATGCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAATAGTGGTGTACGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAAATGTAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTCGGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAACATAT ] [+] EMBL BM617911 [ ccGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGATGCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAATAGTGGTGTACGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAAATGTAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTCGGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAACATATAATGATGCGATTTTAAATTAATAAAATAAAGTCTTACTTCTCGACAATTTC] consensusID : consensus_7163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 521 fasta sequence [CCGGCCGCAAACCGGACCGGAACATAGAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGATACATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTACGAAGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAATATATAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTTGGAAAATGTTTCTACTCCCAACCATTCCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTAGGACGAATTTGGTTGTCATTTTCATGGCTTGCTTCTGAACATGTAATGATGCGAAATTGCATTAATAAAATAAAGGTTCGAAAATAAACGATTTTACAAACGCT] [+] EMBL BM602343 [CCGGCCGCAAACCGGACCGGAACATAGAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGATACATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTACGAAGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAATATATAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCAT ] [+] EMBL BM591525 [ ccgACCGGACCGGAACATAGAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGATACATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTACGAAGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAATATATAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTTGGAAAATGTTTCTACTCCCAACCATTCCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTAGGACGAATTTGGTTGTCATTTTCATGGCTTGCTTCTGAACATGTAATGATGCGAAATTGCATTAATAAAATAAAGGTTCGAAAATAAACGATTTTACAAACGCT] consensusID : consensus_7163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 508 fasta sequence [AAAAAGCCGCAAACGGACGGAACATAGAAATGGAACAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCAATTCGCATATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCCAGACACTTCCTACCGACCAAACTACCCTGGAATGATTCATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTAGATAATTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTC-AAATATAGCCGCCAAGCGCGTTCATAATTAAAACCAAGAATTGCAGAC-ACTTACAGCATAAATCCTTCTCTTGGAAAATGTTTCTACTCCCTACCTTTCCGAAAGATGATCCGATAACGGTGGTTATGGTTCGGTCCACTCGAACGAATTTGGTTGTCTTTCTCATGGCATGCGAGAGGAAGAACATGCGATTTTAAAATAATAAAATAAATGTTACTTCCCCTTT] [+] EMBL CNS08QNM [AAAAAGCCGCAAACGGACGGAACATAGAAATGGAACAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCAATTCGCATATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCCAGACACTTCCTACCGACCAAACTACCCTGGAATGATTCATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTAGATAATTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTC AAATATAGCCGCCAAGCGCGTTCATAATTAAAACCAAGAATTGCAGAC ACTTACAGCATAAAT ] [-] EMBL CNS08QNN [ TCT GAAACAATGGCCACAACGCGCCATCAATAGAGATGTAGATAATTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTCAAAATATAGCCCCCAAGCGCGTTCATAATTAAAACCAAGAATTGCAGACAACTTACAGCATAAATCCTTCTCTTGGAAAATGTTTCTACTCCCTACCTTTCCGAAAGATGATCCGATAACGGTGGTTATGGTTCGGTCCACTCGAACGAATTTGGTTGTCTTTCTCATGGCATGCGAGAGGAAGAACATGCGATTTTAAAATAATAAAATAAATGTTACTTCCCCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7163#0 CCGCGGACGCGTGGGGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATA 60 consensus_7163#1 ------------CCGGCCGCAAACCGGACCGGAACATAGAAATGGAACCAAAAATTGATA 48 consensus_7163#2 ----------AAAAAGCCGCAAAC--GGACGGAACATAGAAATGGAAC-AAAAATTGATA 47 ********* * ********* ********* *********** consensus_7163#0 AAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCAC 120 consensus_7163#1 AAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCAC 108 consensus_7163#2 AAAATCGCGGAAGTATTCGGCGACGC-AATTCGCATATACTTCCGTAGCGATTATATCAC 106 ************************** ******** ************************ consensus_7163#0 ATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGAT 180 consensus_7163#1 ATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGAT 168 consensus_7163#2 ATCTTTTACCTCATGACCCGCTCCAGACACTTCCTACCGACCAAACTACCCTGGAATGAT 166 *********************** *************** ***** ** * * ******* consensus_7163#0 GCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAAT 240 consensus_7163#1 ACATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAAT 228 consensus_7163#2 TCATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAAT 226 ********************** **************** * ************ *** consensus_7163#0 AGTGGTGTA-----------CGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAA 289 consensus_7163#1 AGAGATGTA-----------CGAAGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAAT 277 consensus_7163#2 AGAGATGTAGATAATTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTCAAA- 285 ** * **** ***** ****************** ********* ** consensus_7163#0 ATGTAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAA 349 consensus_7163#1 ATATAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAA 337 consensus_7163#2 -TATAGCCGCCAAGCGCGTTCATAATTAAAACCAAGAATTGCAGACA-CTTACAGCATAA 343 * **** ****** ****** * * ******** *********** ************ consensus_7163#0 ATCCTTGTTTCGGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGT 409 consensus_7163#1 ATCCTTGTTTTGGAAAATGTTTCTACTCCCAACCATTCCGAAAGGTGATCCGATAACTGT 397 consensus_7163#2 ATCCTTCTCTTGGAAAATGTTTCTACTCCCTACCTTTCCGAAAGATGATCCGATAACGGT 403 ****** * * ******************* *** ** ****** ************ ** consensus_7163#0 GTTTACGGTTCAGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAAC 469 consensus_7163#1 GTTTACGGTTCAGTCCACTAGGACGAATTTGGTTGTCATTTTCATGGCTTGCTTCTGAAC 457 consensus_7163#2 GGTTATGGTTCGGTCCACTCGAACGAATTTGGTTGTCTTTCTCATGGCATGC----GAGA 459 * *** ***** ******* * *************** ** ******* *** * consensus_7163#0 ATATAATGATGCGATTTTAAATTAATAAAATAAAGTCTTACTTCTCGACAATTTC----- 524 consensus_7163#1 ATGTAATGATGCGAAATTGCATTAATAAAATAAAGGTTCGAAAATAAACGATTTTACAAA 517 consensus_7163#2 GGAAGAACATGCGATTTTAAAATAATAAAATAAATGTTACTTCCCCTTT----------- 508 * ****** ** * ************ * consensus_7163#0 ---- consensus_7163#1 CGCT 521 consensus_7163#2 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||