These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1554 fasta sequence [CCGCGATTAGTGAGTGATTCAGTAACTGATCAGTGTGTAACGAGAGAGCATCAGATAGCGCAACGCAGTTCCTTAAGCGGTTTCTTCACAATAAAACCAATAAAAGTTTAATTTCCAAATCAAATCGGCACCATTTCAATTTTTTCCTCTTCTGCTGAATATTCAAGATTGGGAGGGTTAGTATGTTGAACCTAGAAATGAATGGTACGCGCTGCTTTGTTGTTAAGATCTTTTTGGGACTTTTCGTGCTGGGAGTAGCTGGCACAGAGTTTGAGAAAGTCTTCGAATGGAAACAGATATCCTACACGAATCTGCCGGATCGGAGCAAAGGTTCTACCGACAATGAAACATTTCAGGCGTACAACAACGTCCCCATGGGTGCGACGCATCACAAAAACCGCCTGTTCATCACCATTCCTCGCCGAAGGCCCGGCATTCTGGCCACACTGAATGTGATCGATATGACGAAGGTGTCGCGAGGTGATCGTAGTCCACCGTTCCAAGCCTACCCCTCCTATTCGATCAACGAACTGCAGCCACAGTACGAGCCCGACCTGCACAAGCTGATCTCGGTGTACCGCACCAGGGTGGATGCCTGCGAACGGCTCTGGTTCGTCGATAC-GGGTATGCTCGAGTATCCCGGTAATCGAATGCAGGTGCAGCGGCCCCAGCTCTGGATTATCGATTTGAAGCGCGACCAGCTGGTCCAGCGGTACACGATACCGGCATCGATCGTACGGGAAGGCGTCGGTATGGCCAGCCTCACCGTGGACGTGGAAGCGACAGATTGCGATGCAGCTTACGCTTACATCCCGGATCTTGTCGCAAATGCGATCCACGTGTACGGTTTGCGCGAGAACGATATGTGGTCGTTTAACCACAGCTCCTTCGCACACGATCCTACCCGTGCAGCGCTGAACGTTGCCGGCCAGANGTTCGAGTGGGACGATGGAGTGTTTTCGATAGCGCTCGGACAGAACGATACGCTGGCCAGTGGGAAGATGGTGTACTACCA-TCCAATGGTTAGTACGACCGAGTTCGGGACGTTTACGAACGTGCTGCGAAGCAAATGGATTGCACTGTCGGGAAATTACGCCAGTCTGTTCGAGCCGTTGGGTGACCGCGGTCCGAATACGCAATCCACGATGCACCATTACGATGCACGTACCGGGGTACTGTTCTATGCGGAGATAAACCGGAACTCTATTGGCTGCTGGAACACGCGGCAAGTCTGCGAGGCCGGGAATCACGCGGTTGTGCATCTGGACAATCGAGAGCTGATCTATCCGTCCGACCTGACCAGCGACTCCGACGGCGTGCTGTGGGTGTTGACTAATAATTTGCCCGTGTGGATTTACGGGCGGTTGAACGAGAGTGACTACAATTTTCGCATATGGCGCCAGGATCCGGCCGTCGCCATCCGGGGTACAAAGTGTGACAATGTAGCTTAGAAGCTGTTTGGACCGATGAGACATCTATGACCGTACATATTGGTTTCAGGGGATTAAAAACTATTTTTTCCAAAGATAAAGTTAATACATTTACATGAATTGC] [+] EMBL BM651493 [CCGCGATTAGTGAGTGATTCAGTAACTGATCAGTGTGTAACGAGAGAGCATCAGATAGCGCAACGCAGTTCCTTAAGCGGTTTCTTCACAATAAAACCAATAAAAGTTTAATTTCCAAATCAAATCGGCACCATTTCAATTTTTTCCTCTTCTGCTGAATATTCAAGATTGGGAGGGTTAGTATGTTGAACCTAGAAATGAATGGTACGCGCTGCTTTGTTGTTAAGATCTTTTTGGGACTTTTCGTGCTGGGAGTAGCTGGCACAGAGTTTGAGAAAGTCTTCGAATGGAAACAGATATCCTACACGAATCTGCCGGATCGGAGCAAAGGTTCTACCGACAATGAAACATTTCAGGCGTACAACAACGTCCCCATGGGTGCGACGCATCACAAAAACCGCCTGTTCATCACCATTCCTCGCCGAAGGCCCGGCATTCTGGCCACACTGAATGTGATCGATATGACGAAGGTGTCGCGAGGTGATCGTAGTCCACCGTTCCAAGCCTACCCCTCCTATTCGATCAACGAACTGCAGCCACAGTACGAGCCCGACCTGCACAAGCTGATCTCGGTGTACCGCACCAGGGTGGATGCCTGCGAACGGCTCTGGTTCGTCGATACGGGGTATGCTCGAGTATCCCGGTAATCGAATGCAGGTGCAG ] [+] EMBL BX626981 [ ATCCTACACGAATCTGCCGGATCGGAGCAAAGGTTCTACCGACAATGAAACATTTCAGGCGTACAACAACGTCCCCATGGGTGCGACGCATCACAAAAACCGCCTGTTCATCACCATTCCTCGCCGAAGGCCCGGCATTCTGGCCACACTGAATGTGATCGATATGACGAAGGTGTCGCGAGGTGATCGTAGTCCACCGTTCCAAGCCTACCCCTCCTATTCGATCAACGAACTGCAGCCACAGTACGAGCCCGACCTGCACAAGCTGATCTCGGTGTACCGCACCAGGGTGGATGCCTGCGAACGGCTCTGGTTCGTCGATAC GGGTATGCTCGAGTATCCCGGTAATCGAATGCAGGTGCAGCGGCCCCAGCTCTGGATTATCGATTTGAAGCGCGACCAGCTGGTCCAGCGGTACACGATACCGGCATCGATCGTACGGGAAGGCGTCGGTATGGCCAGCCTCACCGTGGACGTGGAAGCGACAGATTGCGATGCAGCTTACGCTTACATCCCGGATCTTGTCGCAAATGCGATCCACGTGTACGGTTTGCGCGAGAACGATATGTGGTCGTTTAACCACAGCTCCTTCGCACACGATCCTACCCGTGCAGCGCTGAACGTTGCCGGCCAGANGTTCGAGTGGGACGATGGAGTGTTTTCGATAGCGCTCGGACAGAACGATACGCTGGGCAGTGGGAAGATGGTGTACTACCATTCCAATGGGTAGTACGACCGA ] [+] EMBL BX606309 [ CTACCCCTCCTATTCGATCAACGAACTGCAGCCACAGTACGAGCCCGACCTGCACAAGCTGATCTCGGTGTACCGCACGAGGGTGGATGCCTGCGAACGGCTCTGGTTCGTCGATAC GGGTATGCTCGAGTATCCCGGTAATCGAATGCAGGTGCAGCGGCCCCAGATCTGGATTATCGATTTGAAGCGCGACCAGCTGGTCCAGCGGTACACGATACCGGCATCGATCGTACGGGAAGGCGTCGGTATGGCCAGCCTCACCGTGGACGTGGAAGCGACGGATTGCGATGCAGCTTACGCTTACATCCCGGATCTTGTCGCAAACGCGATCCACGTGTACGGTTTGCGCGAGAACGATATGTGGTCGTTTAACCACAGCTCCTTCGCACACGATCCTACCCGTGCCGCGTTGAACGTGGCCGGCCAGAGGTTCGAGTGGGACGATGGAGTGTTTTCGATAGCGCTCGGACAAAACGATACGCTGGCCAGTGGGAAGATGGTGTACTACCA TCCAATGATTAGTACGACCGAGTTCGGGACGTTTACGAACGTGCTGCGAAGCAAATGGATTGCACTGTCGGGAAATTACGCCAGTCTGTTCGAGCCGTTGGGTGACCGCGGTCCGAATACGCAATCCACGATGCACCATTACGATGCGCGTACCGGGGTACTGTTCTATGCGGAG ] [+] EMBL BM631847 [ ccgCGATGGAGTGTTTTCGATAGCGCTCGGACAGAACGATACGCTGGCCAGTGGGAAGATGGTGTACTACCA TCCAATGGTTAGTACGACCGAGTTCGGGACGTTTACGAACGTGCTGCGAAGCAAATGGATTGCACTGTCGGGAAATTACGCCAGTCTGTTCGAGCCGTTGGGTGACCGCGGTCCGAATACGCAATCCACGATGCACCATTACGATGCACGTACCGGGGTACTGTTCTATGCGGAGATAAACCGGAACTCTATTGGCTGCTGGAACACGCGGCAAGTCTGCGAGGCCGGGAATCACGCGGTTGTGCATCTGGACAATCGAGAGCTGATCTATCCGTCCGACCTGACCAGCGACTCCGACGGCGTGCTGTGGGTGTTGACTAATAATTTGCCCGTGTGGATTTACGGGCGGTTGAACGAGAGTGACTACAATTTTCGCATATGGCGCCAGGATCCGGCCGTCGCCATCCGGGGTACAAAGTGTGACAATGTAGCTTAGAAGCTGTTTGGACCGATGAGACATCTATGACCGTACATATTGGTTTCAGGGGATTAAAAACTATTTTTTCCAAAGATAAAGTTAATACATTTACATGAATTGC] [+] EMBL BM619716 [ ccgCGTTGGGTGACCGCGGCCCGAATACGCAATCCACGATGCACCATTACGATGCACGTACCGGGGTACTGTTCTATGCGGAGATAAACCGGAACTCTATTGGCTGCTGGAACACGCGGCAAGTCTGCGAGGCCGGGAATCACGCGGTTGTGCATCTGGACAATCGAGAGCTGATCTATCCGTCCGACCTGACCAGCGACTCCGACGGCGTGCTGTGGGTGTTGACTAATAATTTGCCCGTGTGGATTTACGGGCGGTTGAACGAGAGTGACTACAATTTTCGCATATGGCGCCAGGATCCGGCCGTCGCCATCCGGGGTACAAAGTGTGACAATGTAGCTTAGAAGCTGTTTGGACCGATGAGACATCTATGACCGTACATATTGGTTTCAGGGGATTAAAAACTATTTTTTCCAAAGATAAAGTTAATACATTTACATG ] consensusID : consensus_7164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [AATCGGCACGAGGTGTCCTTCACTTTGATCTTACAAGAATGGTACAGTATGTAATTGACATCACTGTGAACACTGTTTTGTAGCCACAGTACGAGCCCGACCTGCACAAGCTGATCTCGGTGTACCGCACCAGGGTGGATGCCTGCGAACGGCTCTGGTTCGTCGATACGGGTATGCTCGAGTATCCCGGTAATCGAATGCAGGTGCAGCGGCCCCAGCTCTGGATTATCGATTTGAAGCGCGACCAGCTGGTCCAGCGGTACACGATACCGGCATCGATCGTACGGGAAGGCGTCGGTATGGCCAGCCTCACCGTGGACGTGGAAGCGACAGATTGCGATGCAGCTTACGCTTACATCCCGGATCTTGTCGCAAATGCGATCCACGTGTACGGTTTGCGCGAGAACGATATGTGGTCGTTTAACCACAGCTCCTTCGCACACGATCCTACCCGTGCAGCGCTGAACGTTGCCGGCCAGAGGTTCGACGTGGGACGATGGAGTGTNTCNCGATAGCGCTCGGACAGAACGATACGCTGGCCANNTGGGAAGATGGTGTACTACCATCCAATGGTTAT] [+] EMBL AL934656 [AATCGGCACGAGGTGTCCTTCACTTTGATCTTACAAGAATGGTACAGTATGTAATTGACATCACTGTGAACACTGTTTTGTAGCCACAGTACGAGCCCGACCTGCACAAGCTGATCTCGGTGTACCGCACCAGGGTGGATGCCTGCGAACGGCTCTGGTTCGTCGATACGGGTATGCTCGAGTATCCCGGTAATCGAATGCAGGTGCAGCGGCCCCAGCTCTGGATTATCGATTTGAAGCGCGACCAGCTGGTCCAGCGGTACACGATACCGGCATCGATCGTACGGGAAGGCGTCGGTATGGCCAGCCTCACCGTGGACGTGGAAGCGACAGATTGCGATGCAGCTTACGCTTACATCCCGGATCTTGTCGCAAATGCGATCCACGTGTACGGTTTGCGCGAGAACGATATGTGGTCGTTTAACCACAGCTCCTTCGCACACGATCCTACCCGTGCAGCGCTGAACGTTGCCGGCCAGAGGTTCGACGTGGGACGATGGAGTGTNTCNCGATAGCGCTCGGACAGAACGATACGCTGGCCANNTGGGAAGATGGTGTACTACCATCCAATGGTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7164#0 CCGCGATTAGTGAGTGATTCAGTAACTGATCAGTGTGTAACGAGAGAGCATCAGATAGCG 60 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 CAACGCAGTTCCTTAAGCGGTTTCTTCACAATAAAACCAATAAAAGTTTAATTTCCAAAT 120 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 CAAATCGGCACCATTTCAATTTTTTCCTCTTCTGCTGAATATTCAAGATTGGGAGGGTTA 180 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 GTATGTTGAACCTAGAAATGAATGGTACGCGCTGCTTTGTTGTTAAGATCTTTTTGGGAC 240 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 TTTTCGTGCTGGGAGTAGCTGGCACAGAGTTTGAGAAAGTCTTCGAATGGAAACAGATAT 300 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 CCTACACGAATCTGCCGGATCGGAGCAAAGGTTCTACCGACAATGAAACATTTCAGGCGT 360 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 ACAACAACGTCCCCATGGGTGCGACGCATCACAAAAACCGCCTGTTCATCACCATTCCTC 420 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 GCCGAAGGCCCGGCATTCTGGCCACACTGAATGTGATCGATATGACGAAGGTGTCGCGAG 480 consensus_7164#1 ----------------------------------AATCGGCACGAGG--TGTCCTTCACT 24 **** * ** * ** * consensus_7164#0 GTGATCGTAGTCCACCGTTCCAA-GCCTACCC--CTCCTATTCGATCAACGAACTGCAGC 537 consensus_7164#1 TTGATCTTACAAGAATGGTACAGTATGTAATTGACATCACTGTGAACACTGTTTTGTAGC 84 ***** ** * * * ** ** * * * ** ** * ** *** consensus_7164#0 CACAGTACGAGCCCGACCTGCACAAGCTGATCTCGGTGTACCGCACCAGGGTGGATGCCT 597 consensus_7164#1 CACAGTACGAGCCCGACCTGCACAAGCTGATCTCGGTGTACCGCACCAGGGTGGATGCCT 144 ************************************************************ consensus_7164#0 GCGAACGGCTCTGGTTCGTCGATACGGGTATGCTCGAGTATCCCGGTAATCGAATGCAGG 657 consensus_7164#1 GCGAACGGCTCTGGTTCGTCGATACGGGTATGCTCGAGTATCCCGGTAATCGAATGCAGG 204 ************************************************************ consensus_7164#0 TGCAGCGGCCCCAGCTCTGGATTATCGATTTGAAGCGCGACCAGCTGGTCCAGCGGTACA 717 consensus_7164#1 TGCAGCGGCCCCAGCTCTGGATTATCGATTTGAAGCGCGACCAGCTGGTCCAGCGGTACA 264 ************************************************************ consensus_7164#0 CGATACCGGCATCGATCGTACGGGAAGGCGTCGGTATGGCCAGCCTCACCGTGGACGTGG 777 consensus_7164#1 CGATACCGGCATCGATCGTACGGGAAGGCGTCGGTATGGCCAGCCTCACCGTGGACGTGG 324 ************************************************************ consensus_7164#0 AAGCGACAGATTGCGATGCAGCTTACGCTTACATCCCGGATCTTGTCGCAAATGCGATCC 837 consensus_7164#1 AAGCGACAGATTGCGATGCAGCTTACGCTTACATCCCGGATCTTGTCGCAAATGCGATCC 384 ************************************************************ consensus_7164#0 ACGTGTACGGTTTGCGCGAGAACGATATGTGGTCGTTTAACCACAGCTCCTTCGCACACG 897 consensus_7164#1 ACGTGTACGGTTTGCGCGAGAACGATATGTGGTCGTTTAACCACAGCTCCTTCGCACACG 444 ************************************************************ consensus_7164#0 ATCCTACCCGTGCAGCGCTGAACGTTGCCGGCCAGANGTTCGA-GTGGGACGATGGAGTG 956 consensus_7164#1 ATCCTACCCGTGCAGCGCTGAACGTTGCCGGCCAGAGGTTCGACGTGGGACGATGGAGTG 504 ************************************ ****** **************** consensus_7164#0 TTT-TCGATAGCGCTCGGACAGAACGATACGCTGGCCAGT-GGGAAGATGGTGTACTACC 1014 consensus_7164#1 TNTCNCGATAGCGCTCGGACAGAACGATACGCTGGCCANNTGGGAAGATGGTGTACTACC 564 * * ********************************* ******************* consensus_7164#0 ATCCAATGGTTAGTACGACCGAGTTCGGGACGTTTACGAACGTGCTGCGAAGCAAATGGA 1074 consensus_7164#1 ATCCAATGGTTAT----------------------------------------------- 577 ************ consensus_7164#0 TTGCACTGTCGGGAAATTACGCCAGTCTGTTCGAGCCGTTGGGTGACCGCGGTCCGAATA 1134 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 CGCAATCCACGATGCACCATTACGATGCACGTACCGGGGTACTGTTCTATGCGGAGATAA 1194 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 ACCGGAACTCTATTGGCTGCTGGAACACGCGGCAAGTCTGCGAGGCCGGGAATCACGCGG 1254 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 TTGTGCATCTGGACAATCGAGAGCTGATCTATCCGTCCGACCTGACCAGCGACTCCGACG 1314 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 GCGTGCTGTGGGTGTTGACTAATAATTTGCCCGTGTGGATTTACGGGCGGTTGAACGAGA 1374 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 GTGACTACAATTTTCGCATATGGCGCCAGGATCCGGCCGTCGCCATCCGGGGTACAAAGT 1434 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 GTGACAATGTAGCTTAGAAGCTGTTTGGACCGATGAGACATCTATGACCGTACATATTGG 1494 consensus_7164#1 ------------------------------------------------------------ consensus_7164#0 TTTCAGGGGATTAAAAACTATTTTTTCCAAAGATAAAGTTAATACATTTACATGAATTGC 1554 consensus_7164#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||