These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1816 fasta sequence [CAGAATCGCCCCGAGGCNTGAACAAAATCCGGCCGACCGTTTGGGCTGCAATCGCGACTCCGCCTTCCTGGACATTATGAATCATTCGTTCTTCAAGAGCATTGACTGGGAGATGCTCGAGCAAAAGCAAATTACGCCACCGTTCCGCCCGCGGCTAGACTCCGATCGCGATTTGGCCAACTTCCCGCCTGAGTTCACCGACGAACCGGTCCACCTAACGCCGGACGATGATCGCGTCATCGACAAGATCGATCAATCCGAGTTCGAAGGATTCGAGTATGTGAACCCGTTGCTGATGTCGTTGGAAGACTGCGTTTGACATCACGCATCCTGCGAGCTGCATCCGTACAACATGCAGCTATACGGTGACGATTCTAGCGATTACGATTCCGTTGTGGATGAGCTAAGCATCCTTCAATTACCTCCGCCACCATCGAAGAGTTTGCTGCAGCACATGTTTTGCCTTCCATTGAACTAGCCACAAGCGTTGTAGCCCTCTCCGTGCAACCAATCTGCAAACTCTTAGCTGAGTGAGAACGACGGCACAGTGATGACAGCGACTACCGGAGCAGAAGCAACCCTCTGTGTGACACTGTACTAAACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTATCTCTCTGTACTATCCATTTCTGCAACCATACCGATGTCGTTAACCTAAATCACAGTCCCATTTTGTAACGTTTATTATCTATGCTTTGTATTTTGTATTTGTATTACATTGAAGTGTTTTCGCTGCAAAGAAAGATAGGAAGAAGTATGAGTAACAAAAAAAAGTGAAACTACAACGGAAACGGAGTGCGAGCAGTGATGAAACGAACACGAATGCATGATCCGTGACTAAAAGGAAAAAGAAAAACCTTGTTCTAGAATAACACAAGCCCAGAATGGAAGCGGAAAAGCAGCAGAAACAAAACACTAAAACCTCTAGCAGACTATGGACACTAAACATATTTAACAAGAACTTATCATACAAACGTAAAAGAGAGTTTCAAATTCAAAACATGAACCCCCCCATACTAAATCAAACAGTCGCCCTTGTGCATCATTGTATTGCAAAAAACAAAGAACAAACAAAAGGAAGAAGTAACGAATAAAATCACAATTGCTATGTAGAATTATAGGAGGTTTTGCGATAAACGACGATGGAATAGAGAAAAACAAACAAACAAACAAACAATTTAATGATTCCGCTACTCCTTGCGCCAAGTTTGCGATTATTAGTAGCGCGTGTTGGCAACATTTCCACGTGCAGGCGTTTTGTTTCTCTTTCTTCCTCACACTCTCTTTCTCCGATGCAAATGCGATTCGTGTTCGGTTTTGTTTTTCGCGGAGAAAGTGCATGACTACTGCGAACGAGCATTAACCACTTATTATAAACG] [+] EMBL AL935001 [CAGAATCGCCCCGAGGCNTGAACAAAATCCGGCCGACCGTTTGGGCTGCAATCGCGACTCCGCCTTCCTGGACATTATGAATCATTCGTTCTTCAAGAGCATTGACTGGGAGATGCTCGAGCAAAAGCAAATTACGCCACCGTTCCGCCCGCGGCTAGACTCCGATCGCGATTTGGCCAACTTCCCGCCTGAGTTCACCGACGAACCGGTCCACCTAACGCCGGACGATGATCGCGTCATCGACAAGATCGATCAATCCGAGTTCGAAGGATTCGAGTATGTGAACCCGTTGCTGATGTCGTTGGAAGACTGCGTTTGACATCACGCATCCTGCGAGCTGCATCCGTACAACATGCAGCTATACGGTGACGATTCTAGCGATTACGATTCCGTTGTGGATGAGCTAAGCATCCTTCAATTACCTCCGCCACCATCGAAGAGTTTGCTGCAGCACATGTTTTGCCTTCCATTGAACTAGCCACAAGCGTTGTAGCCCTCTCC ] [+] EMBL BM625255 [ ccgCGAAGAGTTTGCTGCAGCACATGTTTTGCCTTCCATTGAACTAGCCACAAGCGTTGTAGCCCTCTCCGTGCAACCAATCTGCAAACTCTTAGCTGAGTGAGAACGACGGCACAGTGATGACAGCGACTACCGGAGCAGAAGCAACCCTCTGTGTGACACTGTACTAAACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAAC ] [+] EMBL BM622970 [ CCGCGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTATC ] [+] EMBL BX618035 [ TTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTATCTCTCTGTACTATCCATTTCTGCAACCATACCGATGTCGTTAACCTAAATCACAGTCCCATTTTGTAACGTTTATTATCTATGCTTTGTATTTTGTATTTGTATTACATTGAAGTGTTTTCGCTGCAAAGAAAGATAGGAAGAAG ] [+] EMBL BX628693 [ AACGTTTATTATCTATGCTTTGTATTTTGTATTTGTATTACATTGAAGTGTTTTCGCTGCAAAGAAAGATAGGAAGAAGTATGAGTAACAAAAAAAAGTGAAACTACAACGGAAACGGAGTGCGAGCAGTGATGAAACGAACACGAATGCATGATCCGTGACTAAAAGGAAAAAGAAAAACCTTGTTCTAGAATAACACAAGCCCAGAATGGAAGCGGAAAAGCAGCAGAAACAAAACACTAAAACCTCTAGCAGACTATGGACACTAAACATATTTAACAAGAACTTATCATACAAACGTAAAAGAGAGTTTCAAATTCAAAACATGAACCCCCCCATACTAAATCAAACAGTCGCCCTTGTGCATCATTGTATTGCAAAAAACAAAGAACAAACAAAAGGAAGAAGTAACGAATAAAATCACAATTGCTATGTAGAATTATAGGAGGTTTTGCGATAAACGACGATGGAATAGAGAAAAACAAACAAACAAACAAACAATTTAATGATTCCGCTACTCCTTGCGCCAAGTTTGCGATTATTAGTAGCGCGTGTTGGCAACATTTCCACGTGCAGGCGTTTTGTTTCTCTTTCTTCCTCACACTCTCTTTCTCCGATGCAAATGCGATTCGTGTTCGGTTTTGTTTTTCGCGGAGAAAGTGCATGACTACTGCGAACGAGCATTAACCACTTATTATAAACG] consensusID : consensus_7171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [CACAAGCGTTGTAGCCCTCTCCGTGCAACAATCTGCAAACTCTTAGCTGAGTGAGAACGACGGCACAGTGATGACAGCGACTACCGGAGCAGGAGCAACCCTCTGTGTGACACTGTACTAAACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTAAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCGC] [+] EMBL CNS09FU7 [CACAAGCGTTGTAGCCCTCTCCGTGCAACAATCTGCAAACTCTTAGCTGAGTGAGAACGACGGCACAGTGATGACAGCGACTACCGGAGCAGGAGCAACCCTCTGTGTGACACTGTACTAAACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTAAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7171#0 CAGAATCGCCCCGAGGCNTGAACAAAATCCGGCCGACCGTTTGGGCTGCAATCGCGACTC 60 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 CGCCTTCCTGGACATTATGAATCATTCGTTCTTCAAGAGCATTGACTGGGAGATGCTCGA 120 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 GCAAAAGCAAATTACGCCACCGTTCCGCCCGCGGCTAGACTCCGATCGCGATTTGGCCAA 180 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 CTTCCCGCCTGAGTTCACCGACGAACCGGTCCACCTAACGCCGGACGATGATCGCGTCAT 240 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 CGACAAGATCGATCAATCCGAGTTCGAAGGATTCGAGTATGTGAACCCGTTGCTGATGTC 300 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 GTTGGAAGACTGCGTTTGACATCACGCATCCTGCGAGCTGCATCCGTACAACATGCAGCT 360 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 ATACGGTGACGATTCTAGCGATTACGATTCCGTTGTGGATGAGCTAAGCATCCTTCAATT 420 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 ACCTCCGCCACCATCGAAGAGTTTGCTGCAGCACATGTTTTGCCTTCCATTGAACTAGCC 480 consensus_7171#1 -----------------------------------------------------------C 1 * consensus_7171#0 ACAAGCGTTGTAGCCCTCTCCGTGCAACCAATCTGCAAACTCTTAGCTGAGTGAGAACGA 540 consensus_7171#1 ACAAGCGTTGTAGCCCTCTCCGTGCAAC-AATCTGCAAACTCTTAGCTGAGTGAGAACGA 60 **************************** ******************************* consensus_7171#0 CGGCACAGTGATGACAGCGACTACCGGAGCAGAAGCAACCCTCTGTGTGACACTGTACTA 600 consensus_7171#1 CGGCACAGTGATGACAGCGACTACCGGAGCAGGAGCAACCCTCTGTGTGACACTGTACTA 120 ******************************** *************************** consensus_7171#0 AACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGT 660 consensus_7171#1 AACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGT 180 ************************************************************ consensus_7171#0 TTGATTTTTAGGAGTTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGA 720 consensus_7171#1 TTGATTTTTAGGAGTAAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGA 240 *************** ******************************************** consensus_7171#0 GATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTT 780 consensus_7171#1 GATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTT 300 ************************************************************ consensus_7171#0 TTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGA 840 consensus_7171#1 TTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGA 360 ************************************************************ consensus_7171#0 AAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAA 900 consensus_7171#1 AAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAA 420 ************************************************************ consensus_7171#0 CATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGA 960 consensus_7171#1 CATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGA 480 ************************************************************ consensus_7171#0 CGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTC 1020 consensus_7171#1 CGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTAAAAAAAAAAA 540 ************************************************* consensus_7171#0 TCTCTCTCTCTCTTTCTCTCTCTTTATCTCTCTGTACTATCCATTTCTGCAACCATACCG 1080 consensus_7171#1 AAAAAAAAAAAAAAAAAAAAGGCC-ACATGTGCGC------------------------- 574 * * * * consensus_7171#0 ATGTCGTTAACCTAAATCACAGTCCCATTTTGTAACGTTTATTATCTATGCTTTGTATTT 1140 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 TGTATTTGTATTACATTGAAGTGTTTTCGCTGCAAAGAAAGATAGGAAGAAGTATGAGTA 1200 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 ACAAAAAAAAGTGAAACTACAACGGAAACGGAGTGCGAGCAGTGATGAAACGAACACGAA 1260 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 TGCATGATCCGTGACTAAAAGGAAAAAGAAAAACCTTGTTCTAGAATAACACAAGCCCAG 1320 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 AATGGAAGCGGAAAAGCAGCAGAAACAAAACACTAAAACCTCTAGCAGACTATGGACACT 1380 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 AAACATATTTAACAAGAACTTATCATACAAACGTAAAAGAGAGTTTCAAATTCAAAACAT 1440 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 GAACCCCCCCATACTAAATCAAACAGTCGCCCTTGTGCATCATTGTATTGCAAAAAACAA 1500 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 AGAACAAACAAAAGGAAGAAGTAACGAATAAAATCACAATTGCTATGTAGAATTATAGGA 1560 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 GGTTTTGCGATAAACGACGATGGAATAGAGAAAAACAAACAAACAAACAAACAATTTAAT 1620 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 GATTCCGCTACTCCTTGCGCCAAGTTTGCGATTATTAGTAGCGCGTGTTGGCAACATTTC 1680 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 CACGTGCAGGCGTTTTGTTTCTCTTTCTTCCTCACACTCTCTTTCTCCGATGCAAATGCG 1740 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 ATTCGTGTTCGGTTTTGTTTTTCGCGGAGAAAGTGCATGACTACTGCGAACGAGCATTAA 1800 consensus_7171#1 ------------------------------------------------------------ consensus_7171#0 CCACTTATTATAAACG 1816 consensus_7171#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||