These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1064 fasta sequence [CCGCTAATACCCTGCTGCTGCTGCTGCTGCTGTTGTGCTGCTTTAACTTTGTTTTCAATACAAAATTTAATAATAATCATTTCCAGTACTTTATTAAGTGATAGCTCCCACTACCCGTCAAACCCGTTAAAACCGCGGGCATCGTAAAAATCTTAATGTTTAAAATCGTCACCGTTTGCAACGGCACAACTAACGCTATTCTTACATTTTTCTCTAACTGTTGTTGTACATGAATAAAACACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGAAAACTTTCCCGTGGAAATTCAGAATTGAAAACGCTTTAATACTACTTATATGAAATATATGATAAGAAAGGAAAATAAATCGAGCTATCGAAAACGTTCGCACAAAAAAAAAAAAAGAACCGGGCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACACACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTGGAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGCCGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAACCAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTTTTAGTGGTTAGCCGTTTTTACGGATACATTTATGGTACAGTTTTCCTCGGGCTTTGTTTACCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCCCGCGATCTAGAAAAAGCTAATCGGTAAGAACGGCTGTCAAGAAGTTAGCGCGAAATATAGACACATTTGTTAGGCTTTGCAAGGGCTGATAGACTTACTAGAGTAAAGGGAGGAAAAAGGGCGGTAGGGTGAAAGTAGTCAGCAATTAAAATGTAGAAAAGCAAAAGAACAGGAAACAGCTCGTCCCATCTTGTGGTCCCTTTTGTCCCCAACTCAGTCTCCTTATTGACAGTTTACCCTT] [+] EMBL BM606668 [CCGCTAATACCCTGCTGCTGCTGCTGCTGCTGTTGTGCTGCTTTAACTTTGTTTTCAATACAAAATTTAATAATAATCATTTCCAGTACTTTATTAAGTGATAGCTCCCACTACCCGTCAAACCCGTTAAAACCGCGGGCATCGTAAAAATCTTAATGTTTAAAATCGTCACCGTTTGCAACGGCACAACTAACGCTATTCTTACATTTTTCTCTAACTGTTGTTGTACATGAATAAAACACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGAAAACTTTCCCGTGG ] [+] EMBL BX616936 [ TTGTTGTACATGAATAAAACACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGCAAACTTTCCCGTGGAAATTCAGAATTGAAAACGCTTTAATACTACTTATATGAAATATATGATAAGAAAGGAAAATAAATCGAGCTATCGAAAACGTTCGCACAAAAAAAAAAAAAGAACCGGGCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACACACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTGGAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGCCGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAACCAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTTTTAGTGGTTAGCCGTTTTTACGGATACATTTATGGTACAGTTTTCCTCGGGCTTTGTTTACCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCC ] [+] EMBL BX622725 [ GCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACACACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTGGAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGCCGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAACCAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTTTTAGTGGTTAGCCGTTTTTACGGATACATTTATGGTACAGTTTTCCTCGGGCTTTGTTTACCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCCCGCGATCTAGAAAAAGCTAATCGGTAAGAACGGCTGTCAAGAAGTTAGCGCGAAATATAGACACATTTGTTAGGCTTTGCAAGGGCTGATAGACTTACTAGAGTAAAGGGAGGAAAAAGGGCGGTAGGGTGAAAGTAGTCAGCAATTAAAATGTAGAAAAGCAAAAGAACAGGAAACAGCTCGTCCCATCTTGTGGTCCCTTTTGTCCCCAACTCAGTCTCCTTATTGACAGTTTACCCTT] consensusID : consensus_7180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 504 fasta sequence [CATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATATACAATGACACACACACACACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACCCTTACACAGTTTCTTGGAACGGTACCGGTTTTTCCTATGCGAGATCGATCCTCCTCTTATCAAGCTCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTTTCCTCTCCAATAGAAAATCCCTTTAAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAACCGCCATAAACCACCACCACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACGAGAAGCAAAACTCTGATCGTTATGTTTTTTTAATTGTTGCAAG] [+] EMBL BX610615 [CATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATATACAATGACACACACACACACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACCCTTACACAGTTTCTTGGAACGGTACCGGTTTTTCCTATGCGAGATCGATCCTCCTCTTATCAAGCTCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTTTCCTCTCCAATAGAAAATCCCTTTAAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAACCGCCATAAACCACCACCACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACGAGAAGCAAAACTCTGATCGTTATGTTTTTTTAATTGTTGCAAG] [+] EMBL BX610616 [ CGTACACGCGTACACTAAACTACACCCACACGGATATACAATGACACACACACACACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACCCTTACACAGTTTCTTGGAACGGTACCGGTTTTTCCTATGCGAGATCGATCCTCCTCTTATCAAGCTCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTTTCCTCTCCAATAGAAAATCCCTTTAAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAACCGCCATAAACCACCACCACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACGAGAAGCAAAACTCTGATC ] consensusID : consensus_7180#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [TGCACAGGAGGAAGGAAAATAGAGCGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTTTGGGGAAAAGCAGAGCACAGGGAAAACCCACAATGAATCATATAAGATAATTATGGATATAAATATTTATAGAATCTCCCATAATCAGGCAGGTCCTACCGGGAGTTAGAGAAAGCTCATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATACACACTGACACACGCGCGCACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGTTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCGCTCTTAGCCCACCAACACAACTACACAGAACCAATCATTTTAAGGCGGTGACGTCATTGATGACCCGCGCAAACACACATACACACACACACATACACACACACATAC] [+] EMBL BM584971 [TGCACAGGAGGAAGGAAAATAGAGCGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTTTGGGGAAAAGCAGAGCACAGGGAAAACCCACAATGAATCATATAAGATAATTATGGATATAAATATTTATAGAATCTCCCATAATCAGGCAGGTCCTACCGGGAGTTAGAGAAAGCTCATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATACACACTGACACACGCGCGCACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGTTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCGCTCTTAGCCCACCAACACAACTACACAGAACCAATCATTTTAAGGCGGTGACGTCATTGATGACCCGCGCAAACACACATACACACACACACATACACACACACATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7180#1 ------------------------------------------------------------ consensus_7180#2 ------------------------------------------------------------ consensus_7180#0 CCGCTAATACCCTGCTGCTGCTGCTGCTGCTGTTGTGCTGCTTTAACTTTGTTTTCAATA 60 consensus_7180#1 ------------------------------------------------------------ consensus_7180#2 ------------------------------------------------------------ consensus_7180#0 CAAAATTTAATAATAATCATTTCCAGTACTTTATTAAGTGATAGCTCCCACTACCCGTCA 120 consensus_7180#1 ------------------------------------------------------------ consensus_7180#2 ------------------------------------------------------------ consensus_7180#0 AACCCGTTAAAACCGCGGGCATCGTAAAAATCTTAATGTTTAAAATCGTCACCGTTTGCA 180 consensus_7180#1 ------------------------------------------------------------ consensus_7180#2 --------------------------------------TGCACAGGAGGAAGGAAAATAG 22 consensus_7180#0 ACGGCACAACTAACGCTATTCTTACATTTTTCTCTAACTGTTGTTGTACATGAATAAAAC 240 consensus_7180#1 ------------------------------------------------------------ consensus_7180#2 AGCGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTTTGGGGAAAAGCA 82 consensus_7180#0 ACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGAAAA 300 consensus_7180#1 ------------------------------------------------------------ consensus_7180#2 GAGCACAGGGAAAACCCACAATGAATCATATAAGATAATTATGGATATAAATATTTATAG 142 consensus_7180#0 CTTTCCCGTGGAAATTCAGAATTGAAAACGCTTTAATACTACTTATATGAAATATATGAT 360 consensus_7180#1 ---------------------------------------------------CATAATCAT 9 consensus_7180#2 AATCTCCCATAATCAGGCAGGTCCTACCGGGAGTT------AGAGAAAGCTCATAATCAT 196 consensus_7180#0 AAGAAAGGAAAATAAATCGAGCTATCGAAAACGTTCGCACAAAAAAAAAAAAAGAACCGG 420 * ** * consensus_7180#1 ACGTACACGCGTAC----ACTAAACTACAC-----CCACACGGATATACAATGACACACA 60 consensus_7180#2 ACGTACACGCGTAC----ACTAAACTACAC-----CCACACGGATACACACTGACACACG 247 consensus_7180#0 GCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACA 480 * ** ** ***** ****** * ** * ** * * ** ** consensus_7180#1 CACA-CACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTT 119 consensus_7180#2 CGCG-CACACA------ACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTT 300 consensus_7180#0 CACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTG 540 * * ** * * *** * ** ** ** * ** * * * * * consensus_7180#1 CCCT-GCAATCCT-GCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATA 177 consensus_7180#2 CCCT-GCAATCCT-GCTCCTTGTTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATA 358 consensus_7180#0 GAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGC 600 * **** * * ** ** * * * * *** * * * consensus_7180#1 CCCCACCAT--CAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACC 235 consensus_7180#2 CCCCACCAT--CAATATTCTCCCGCT--------CTTAGCCCACCAAC--ACAACTACAC 406 consensus_7180#0 CGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAAC 660 * *** * * ** * ** * consensus_7180#1 CTTACAC---AGTTTCTTGGAACGGTACCGGTTTT--TCCTAT--GCGAGATCGATCCTC 288 consensus_7180#2 AGAACCA---ATCATTTTAAGGCGGTGACGTCATTGATGACCC--GCGCAAACACACATA 461 consensus_7180#0 CAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTT 720 * * * ** ** * ** * * * * consensus_7180#1 CTCTTATCAAGCTCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTT------TCCTCT 342 consensus_7180#2 CACACACACACATACACACACACATAC--------------------------------- 488 consensus_7180#0 TTAGTGGTTAGCCGTTTTTACGGATAC-ATTTATGGTACAGTTTTCCTCGGGCTTTGTTT 779 * * *** consensus_7180#1 CCAATAGAAAATCCCTTTAAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAA 402 consensus_7180#2 ------------------------------------------------------------ consensus_7180#0 ACCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCCCGCGATCTAGAAAAAG 839 consensus_7180#1 CCG-CCATAAACCACCACCACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACG 461 consensus_7180#2 ------------------------------------------------------------ consensus_7180#0 CTAATCGGTAAGAACGGCTGTCAAGAAGTT---AGCGCGAAATATAGACACATTTGTTAG 896 consensus_7180#1 AGAAGCAAAACTCTGATCGTTATGTTTTTTTAATTGTTGCAAG----------------- 504 consensus_7180#2 ------------------------------------------------------------ consensus_7180#0 GCTTTGCAAGGGCTGATAGACTTACTAGAGTAAAGGGAGGAAAAAGGGCGGTAGGGTGAA 956 consensus_7180#1 ------------------------------------------------------------ consensus_7180#2 ------------------------------------------------------------ consensus_7180#0 AGTAGTCAGCAATTAAAATGTAGAAAAGCAAAAGAACAGGAAACAGCTCGTCCCATCTTG 1016 consensus_7180#1 ------------------------------------------------ consensus_7180#2 ------------------------------------------------ consensus_7180#0 TGGTCCCTTTTGTCCCCAACTCAGTCTCCTTATTGACAGTTTACCCTT 1064 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||