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Anopheles gambiae
cluster # 7187 cluster # 7187       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7187#0 length = 668 sequences # 2  
consensus_7187#1 length = 601 sequences # 3  
consensus_7187#2 length = 592 sequences # 1  

consensusID : consensus_7187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 668
fasta sequence
                              [CCGGGAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTAAATAAAACTCAGCAGGA]

[+] EMBL BM620571             [CCGGGAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTAAATAAAACTCAGCAGGA]
[+] EMBL BM596177             [            ccGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAgaa                                                    ]


>consensus_7187#0 CCGGGAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCT ACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAG CTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACC ACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACT ACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCT TCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACG ACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCC GAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCC CAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCG TTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTC CCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTAAATAAAACT CAGCAGGA



consensusID : consensus_7187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 601
fasta sequence
                              [TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA]

[+] EMBL AF457553             [TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA]
[+] EMBL CF541999             [        ATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAACAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTNTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATNAAAAACGTAACA TTAAAGCCTCCCCCTAAAAATACAGAAcn   ]
[+] EMBL CF541518             [        ATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGANGCCGGACTACGAGCCCNATANCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGG                                                                                           ]


>consensus_7187#1 TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAA TTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACC ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACA GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGT GAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACG ACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCG ACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCA AGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGG CAGCAAGCGATCGAGCGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCA GACCAAAAACTGAATTAAAAACGTAACATTTAAAGCCTCCCCCAAAAAAAAAAAAAAAAA A



consensusID : consensus_7187#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence
                              [CCGCCCACGCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC]

[+] EMBL BM586779             [CCGCCCACGCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC]


>consensus_7187#2 CCGCCCACGCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGAC ACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCA GGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGC GACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGC AACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACA AGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCA AACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGC ATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACG CGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGC CGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7187#0      ------CCGG---GAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAA 51
consensus_7187#2      --CCGCCCAC---GCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAA 55
consensus_7187#1      TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAA 60
                            *        *    **** ************************ **********

consensus_7187#0      CTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACC 111
consensus_7187#2      CTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACC 115
consensus_7187#1      TTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACC 120
                       *************************************** ************* *****

consensus_7187#0      ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACA 171
consensus_7187#2      ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACA 175
consensus_7187#1      ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACA 180
                      ***************************************** ***** ** *********

consensus_7187#0      GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACC 231
consensus_7187#2      GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACC 235
consensus_7187#1      GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTAC------------------- 221
                      *****************************************                   

consensus_7187#0      GCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 291
consensus_7187#2      GCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 295
consensus_7187#1      -----------TAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 270
                                 *************************************************

consensus_7187#0      ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAG 351
consensus_7187#2      ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAG 355
consensus_7187#1      ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAG 330
                      ************************************************** *********

consensus_7187#0      GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 411
consensus_7187#2      GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 415
consensus_7187#1      GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 390
                      ************************************************************

consensus_7187#0      GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGA 471
consensus_7187#2      GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGA 475
consensus_7187#1      GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGA 450
                      *********************************************** ************

consensus_7187#0      CTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGG 531
consensus_7187#2      CTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGG 535
consensus_7187#1      CTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGG 510
                      ***** ************************************** ***************

consensus_7187#0      GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATT 591
consensus_7187#2      GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC--- 592
consensus_7187#1      GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATT 570
                      *********************************************************   

consensus_7187#0      TAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTA 651
consensus_7187#2      ------------------------------------------------------------
consensus_7187#1      TAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA----------------------------- 601
                                                                                  

consensus_7187#0      AATAAAACTCAGCAGGA 668
consensus_7187#2      -----------------
consensus_7187#1      -----------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)