These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence [CCGGGAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTAAATAAAACTCAGCAGGA] [+] EMBL BM620571 [CCGGGAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTAAATAAAACTCAGCAGGA] [+] EMBL BM596177 [ ccGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAgaa ] consensusID : consensus_7187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 601 fasta sequence [TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA] [+] EMBL AF457553 [TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA] [+] EMBL CF541999 [ ATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAACAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTNTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATNAAAAACGTAACA TTAAAGCCTCCCCCTAAAAATACAGAAcn ] [+] EMBL CF541518 [ ATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGANGCCGGACTACGAGCCCNATANCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGG ] consensusID : consensus_7187#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [CCGCCCACGCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC] [+] EMBL BM586779 [CCGCCCACGCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7187#0 ------CCGG---GAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAA 51 consensus_7187#2 --CCGCCCAC---GCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAA 55 consensus_7187#1 TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAA 60 * * **** ************************ ********** consensus_7187#0 CTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACC 111 consensus_7187#2 CTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACC 115 consensus_7187#1 TTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACC 120 *************************************** ************* ***** consensus_7187#0 ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACA 171 consensus_7187#2 ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACA 175 consensus_7187#1 ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACA 180 ***************************************** ***** ** ********* consensus_7187#0 GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACC 231 consensus_7187#2 GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACC 235 consensus_7187#1 GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTAC------------------- 221 ***************************************** consensus_7187#0 GCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 291 consensus_7187#2 GCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 295 consensus_7187#1 -----------TAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 270 ************************************************* consensus_7187#0 ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAG 351 consensus_7187#2 ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAG 355 consensus_7187#1 ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAG 330 ************************************************** ********* consensus_7187#0 GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 411 consensus_7187#2 GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 415 consensus_7187#1 GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 390 ************************************************************ consensus_7187#0 GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGA 471 consensus_7187#2 GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGA 475 consensus_7187#1 GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGA 450 *********************************************** ************ consensus_7187#0 CTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGG 531 consensus_7187#2 CTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGG 535 consensus_7187#1 CTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGG 510 ***** ************************************** *************** consensus_7187#0 GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATT 591 consensus_7187#2 GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC--- 592 consensus_7187#1 GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATT 570 ********************************************************* consensus_7187#0 TAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTA 651 consensus_7187#2 ------------------------------------------------------------ consensus_7187#1 TAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA----------------------------- 601 consensus_7187#0 AATAAAACTCAGCAGGA 668 consensus_7187#2 ----------------- consensus_7187#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||