|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 969 fasta sequence
[ATGTGCCTTTTTTTTTTTTTTTTTTTAGGAAAATAAATCCGAACCGCATGCCTCATGCCTTTATTGCCTTGCGCAGCTCGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCG-AACAGCTTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTACCCCCTG-TCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGCGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGATAGCTATGGTGCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTGGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCGGTAGAGA-TCGCGCAGCT-G-CTCCCAAGCGTTCGCCGGGATCCGGACGAGCGTGTCGTTCTGCATTTCTGATTTGTTTGAGGCGTAGGCAACAGTTCTCGAGGAATCCGCACCTTTAG]
[-] EMBL CNS09EXA [ATGTGCCTTTTTTTTTTTTTTTTTTTAGGAAAATAAATCCGAACCGCATGCCTCATGCCTTTATTGCCTTGCGCAGCTCGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCG AACAAGTTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTACCCCCTG TCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGCGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGATAGCTATGGTGCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTGGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCGGTAGAGA TCGCGCAGCT G CT CCAAGCGTTCGCCGGGATCCGGACGAGCGTGTCGTTCTG ]
[-] EMBL CNS098HJ [ TTTTTTTTTTTAGGAAAATAAATCCGAACCGCATGCCTCATGCCTTAATTGCCTTGCGCAGCTCGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCGAAACAG TTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTACCCCCTG TCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGTGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGATAGCTATGGTGCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTGGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCGGTAGAGATTCGCGCAGCT G CTCCCAAGCGTTCGCCGGGATCCGGACGAGCGTGTCGTTCT ]
[+] EMBL CNS098HK [ CGAACCGCATGCCTCATGCCTTTATTGCCTTGCGCCTC CGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCG AACAGCTTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTA CCCCTGCTCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGTGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGA CAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGAAAGCTATGGTGCCAGTTGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTTGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTTCTGCCGGTAGAGA TCGCGCA CT GACTCCCAAGCGTTCGCCGGG ]
[+] EMBL CNS09EXB [ CCGCATGCCTCATGCCTTTATTGCCTTGCGCCG TCGCAACC TCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCG AACAGCTTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTA CCCCTGCCCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGCGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAAACCCACCGGCAGAACGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTTAAAAATGAGATCGGCACTTTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGAAAGCTATGGTGCCAGTTGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTTCTGTCAAGCGTGTTCATAAACACATCCGTATGAACTATAATTATGTAGGTTCCTGTCTGTCGCCAGTGGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTTATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTTCTGCCGGTAGAAA TCGCGCA CTGG CTCCCAAGCGTTCGCCGGGATCCGGACGAGCGTTTTGTTCTGCATTTCTGATTTGTTTGAGGCGTAGGCAACAGTTCTCGAGGAATCCGCACCTTTAG]
[-] EMBL BM589350 [ CAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAACGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGCGCCACCTGCTGCGGCAGGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGATAGCTGTGGTGCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTTGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCGGTAGAGA TCGCGCAGCT G CTCCCAAGCGTTCGCCGGGATCCGGACGAGCGTGTCGTTCTGCATTGCTGATTTGcgg ]
consensusID : consensus_7188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence
[GTACTCGGGTGCCTGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGNCGNCATAGTGGGCCGGAATTGCGCTGGACGCGATAGACCCACCCGGCAGTATCGTATCGAAACCGGTGCGCCACCTGCTGCGCGCAGCGTGATACGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACCGGTGGCACGGTACAGGCACATGTTCATCAGATACNCTGTGGTNCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTTCGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCCGGTAGAGATCGCGCAGCTGCTCCCAAGCGTTCCCCCGGNATCCGGACGAGCGTGTCGTTCTGCATTGTAGACCTCGTGCCGATTC]
[-] EMBL BX469557 [GTACTCGGGTGCCTGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGNCGNCATAGTGGGCCGGAATTGCGCTGGACGCGATAGACCCACCCGGCAGTATCGTATCGAAACCGGTGCGCCACCTGCTGCGCGCAGCGTGATACGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACCGGTGGCACGGTACAGGCACATGTTCATCAGATACNCTGTGGTNCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTTCGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCCGGTAGAGATCGCGCAGCTGCTCCCAAGCGTTCCCCCGGNATCCGGACGAGCGTGTCGTTCTGCATTGTAGACCTCGTGCCGATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7188#0 ATGTGCCTTTTTTTTTTTTTTTTTTTAGGAAAATAAATCCGAACCGCATGCCTCATGCCT 60
consensus_7188#1 ------------------------------------------------------------
consensus_7188#0 TTATTGCCTTGCGCAGCTCGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCG 120
consensus_7188#1 ------------------------------------------------------------
consensus_7188#0 CCTCGCCGACCGCCCGGAACCCGAGCTTCTCGAACAGCTTGCGCGAGGCCACGTTGGTGC 180
consensus_7188#1 ------------------------------------------------------------
consensus_7188#0 GCCGTACGCTCGCGTACGTACTGTACCCCCTGTCCGCTAGCCGGCGGGCGATCGCCTTTA 240
consensus_7188#1 ------------------------------------------------------------
consensus_7188#0 TGACGAGCGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGT 300
consensus_7188#1 ------------------------------------------------------------
consensus_7188#0 TCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCG 360
consensus_7188#1 ------------------------------------------------------------
consensus_7188#0 AGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGG-TGCC-GACCGATTTGTTCAG 418
consensus_7188#1 -------------------------------GTACTCGGGTGCCTGACCGATTTGTTCAG 29
******** **** ***************
consensus_7188#0 CCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGAT-GCGCTGGA-GCGATAGACCC 476
consensus_7188#1 CCACTGGTTGTAGATGAAGNCGNCATAGTGGGCCGGAATTGCGCTGGACGCGATAGACCC 89
******************* ** ********* *** ** ******** ***********
consensus_7188#0 ACC-GGCAG-ATCGTATCGAAACCGGTGAGCCACCTGCTGCG-GCA-TGTGATA-GATGA 531
consensus_7188#1 ACCCGGCAGTATCGTATCGAAACCGGTGCGCCACCTGCTGCGCGCAGCGTGATACGATGA 149
*** ***** ****************** ************* *** ****** *****
consensus_7188#0 GATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCAC-GGTG 590
consensus_7188#1 GATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACCGGTG 209
******************************************************* ****
consensus_7188#0 GCACGGTACAGGCACATGTTCATCAGATA-GCTATGGTGCCAGTCGAGCAGCAGCAGCAT 649
consensus_7188#1 GCACGGTACAGGCACATGTTCATCAGATACNCTGTGGTNCCAGTCGAGCAGCAGCAGCAT 269
***************************** ** **** *********************
consensus_7188#0 ACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTAT 709
consensus_7188#1 ACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTAT 329
************************************************************
consensus_7188#0 AATTATGTAGGTTCCTGTCTGTCGCCAGTG-GCCGTTCAGGCTGTAGACAAGAAGCGTTG 768
consensus_7188#1 AATTATGTAGGTTCCTGTCTGTCGCCAGTTCGCCGTTCAGGCTGTAGACAAGAAGCGTTG 389
***************************** *****************************
consensus_7188#0 CACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAA 828
consensus_7188#1 CACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAA 449
************************************************************
consensus_7188#0 TCTCGTGCCGTGGCCAGTCCTGCC-GGTAGAGATCGCGCAGCTGCTCCCAAGCGTTCGCC 887
consensus_7188#1 TCTCGTGCCGTGGCCAGTCCTGCCCGGTAGAGATCGCGCAGCTGCTCCCAAGCGTTCCCC 509
************************ ******************************** **
consensus_7188#0 -GGGATCCGGACGAGCGTGTCGTTCTGCATTTCTGATTTGTTTGAGGCGTAGGCAACAGT 946
consensus_7188#1 CGGNATCCGGACGAGCGTGTCGTTCTGCATTGTAGACCTCGTGCCGATTC---------- 559
** *************************** ** * * *
consensus_7188#0 TCTCGAGGAATCCGCACCTTTAG 969
consensus_7188#1 -----------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||