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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7189#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1320 fasta sequence
[CCGCGCTCAATGGCAACGTGATCGTGCTCGGCGCGGGCGACACTGCATTTGATTGTGCGACGTCGGCGCTGCGCTGCGGTGCCCGCAAGGTGTTCGTCGTGTTCCGGAAGGGCAACAACAACATACGCGCCGTGCCGGAGGAGGTCGAGCTGGCGCGGGAGGAGCGCTGCGAGTTCATACCGTTCATGGCGCCGCGGGAGGTGATTGTGCGGGCGGGGCGCATTGCCGCGATGGAATTCTACCGGACCGAGCAGGACGAGACAGGAAACTGGGTGGAGGACCAGGATCAGATCACACGCCTGAAGGCAAACTACATCATTTCCGCGTTCGGGTCCGGGCTGTACGATGCTGACATCATTAGCGCACTGGACGGGTTAAAGATGAACCGCTGGGGACTGCCGGAGGTAGACCCGAAAACCCAACAGACCTCCCTGCCCGCCGTCTTCTGCGGGGGCGATCTGGCGGGCGCGGCCGAAACGACGGTCGAATCAGTGAACGACGGCAAGACGGCGGCCTGGTACATGCACTGCTATTTGCAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTACAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCAACGCCACCAGAC]
[+] EMBL BM589342 [CCGCGCTCAATGGCAACGTGATCGTGCTCGGCGCGGGCGACACTGCATTTGATTGTGCGACGTCGGCGCTGCGCTGCGGTGCCCGCAAGGTGTTCGTCGTGTTCCGGAAGGGCAACAACAACATACGCGCCGTGCCGGAGGAGGTCGAGCTGGCGCGGGAGGAGCGCTGCGAGTTCATACCGTTCATGGCGCCGCGGGAGGTGATTGTGCGGGCGGGGCGCATTGCCGCGATGGAATTCTACCGGACCGAGCAGGACGAGACAGGAAACTGGGTGGAGGACCAGGATCAGATCACACGCCTGAAGGCAAACTACATCATTTCCGCGTTCGGGTCCGGGCTGTACGATGCTGACATCATTAGCGCACTGGACGGGTTAAAGATGAACCGCTGGGGACTGCCGGAGGTAGACCCGAAAACCCAACAGACCTCCCTGCCCGCCGTCTTCTGCGGGGGCGATCTGGCGGGCGCGGCCGAAACGACGGTCGAATCAGTGAACGACGGCAAGACGGCGGCCTGGTACATGCACTGCTATTTGCAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTT ]
[+] EMBL BM600852 [ ccgCAACAGACCTCCCTGCCCGCCGTCTTCTGCGGGGGCGATCTGGCGGGCGCGGCCGAAACGACGGTCGAATCAGTGAACGACGGCAAGACGGCGGCCTGGTACATGCACTGCTATCTGCAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGG ]
[+] EMBL BX607776 [ TGAACGACGGCAAGACGGCGGCCTGGTACATGCACTGCTATTTGCAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGATCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTACAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCC ]
[+] EMBL BM654609 [ CAGGGCATCCCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGACAAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTGCAATATTTCGC ]
[+] EMBL BX612223 [ CGTTCGGGCTCGCGTCTGCCCCTCCGACCACCAGCACCGCCATGATACGGCGCGCGTTCGAGCAGGGCTGGGGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCGCGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTCAACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTGAAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCGGACTGGATCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTACAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCAACGCCACCAGAC]
consensusID : consensus_7189#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 983 fasta sequence
[CAGAATCGGCACGTAGGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTGCAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCAACGCCACCAGACCGCAGGCCATGCGGGCCATCTCGCTGATCGCGAACAAGCTACCCGGCTTCCCGATCTGCGGCATCGGCGGCATCGACTCGGCCGAGGTCGCGCTGCAGTTCATCCAGTGCGGTGCGCCGATCCTGCAGATCTGCTCCTCCGTGCAGAACCAGGACTTTACCGTCATCGAGGATTACATACTGGGACTGAAGGCGCTGCTCTATCTGCGCGCGAACCCGCCCCGGAAGCACTGCCCTGGGATGGCCAAGGTCGCCACCAGCGGGCCNAAGCTGCAGAAGGGGCAAAACCGGTCGCTCCGTTGCAGGGGCGAGGACGGGCAAGCCCGCGTGCTTGCACTTTCGGGGAGGTACAAGAAGGCACAGCGNGAGGAGAAGCTTGGCCAAATTGTGGCCTTCCANGCGACGGGTCCCACNTGTTGGGGAACCCGGNTTTNGCGGGNCGAAAGCACCGGGCACNAATGNGGCAANCGCAGCNGGTAAGGANACCAGAGTTCTGGGCANNANCCAGGGNATGATTTACCCGAGNNTAAGNGAATNTCTCTGGGCGGGGANATTGCCCGGATCGGGATTCAAAGGTGG]
[+] EMBL BX467590 [CAGAATCGGCACGTAGGTGCACGTACAGCGAGCCGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCAAGACCCCGAGCTGGTGTGCAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCGTGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACGGCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCAACGCCACCAGACCGCAGGCCATGCGGGCCATCTCGCTGATCGCGAACAAGCTACCCGGCTTCCCGATCTGCGGCATCGGCGGCATCGACTCGGCCGAGGTCGCGCTGCAGTTCATCCAGTGCGGTGCGCCGATCCTGCAGATCTGCTCCTCCGTGCAGAACCAGGACTTTACCGTCATCGAGGATTACATACTGGGACTGAAGGCGCTGCTCTATCTGCGCGCGAACCCGCCCCGGAAGCACTGCCCTGGGATGGCCAAGGTCGCCACCAGCGGGCCNAAGCTGCAGAAGGGGCAAAACCGGTCGCTCCGTTGCAGGGGCGAGGACGGGCAAGCCCGCGTGCTTGCACTTTCGGGGAGGTACAAGAAGGCACAGCGNGAGGAGAAGCTTGGCCAAATTGTGGCCTTCCANGCGACGGGTCCCACNTGTTGGGGAACCCGGNTTTNGCGGGNCGAAAGCACCGGGCACNAATGNGGCAANCGCAGCNGGTAAGGANACCAGAGTTCTGGGCANNANCCAGGGNATGATTTACCCGAGNNTAAGNGAATNTCTCTGGGCGGGGANATTGCCCGGATCGGGATTCAAAGGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7189#0 CCGCGCTCAATGGCAACGTGATCGTGCTCGGCGCGGGCGACACTGCATTTGATTGTGCGA 60
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 CGTCGGCGCTGCGCTGCGGTGCCCGCAAGGTGTTCGTCGTGTTCCGGAAGGGCAACAACA 120
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 ACATACGCGCCGTGCCGGAGGAGGTCGAGCTGGCGCGGGAGGAGCGCTGCGAGTTCATAC 180
consensus_7189#1 ------------------------CAGAATCGGCACGT-AGGTGCACGTACAG--CGAGC 33
** *** ** *** ** * ** * *
consensus_7189#0 CGTTCATGGCGCCGCGGGAGGTGATTGTGCGGGCGGGGCGCATTGCCGCGATGGAATTCT 240
consensus_7189#1 CGGACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCA 93
** * ** ** ** * * * * **** * * * * * ** **
consensus_7189#0 ACCGGACCGAGCAGGACGAGACAGG-AAACTGGGTGGAGGACCAGGATCAGATCACACGC 299
consensus_7189#1 ACCTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTGCGGTCA-AGAC 152
*** * ** * * *** ** ** * *** **** * * * *** * *
consensus_7189#0 CTGAAGGCAAACTACATCATTTCCGCGTTCGG-GTCCGG-GCTGTACG-ATGCTGACATC 356
consensus_7189#1 CCCGAGCTGGTGTGCAATATTTC-GCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTT 211
* ** * ** ***** *** * ** * *** ** ** ** ** * * *
consensus_7189#0 ATTAGCGCACTGGACGGGTTAAAGATGAACCGCTGGGGACTGCCGGAGGTAGACCCGAAA 416
consensus_7189#1 CGTGAAGCTCACGCCCAATATTACCGACATCG-TGTCGATCGC-GCAGGCGGCCAAGCGC 269
* ** * * * * * * ** ** ** ** * *** * * *
consensus_7189#0 ACCCAACAGACCTCCCTGCCCGCCGTCTTCTGCGGGGGCGATCTGGCGGGCGCGGCCGAA 476
consensus_7189#1 GGTCAGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGT-CGCT-CCGGG 327
** * * * ** * ** ** * * * * *** * *** ***
consensus_7189#0 ACGACGGTCGAATCAGTGAACGACGGCAAGACGGCGGCCTG-GTAC-ATGCACTGCTATT 534
consensus_7189#1 CGGACGGC--AGCCCGTGGCCGGCCGTC-GGTGCCGACCGGCGCACCACGTACGGTGGTG 384
***** * * *** ** * * * * ** ** * * ** * * ** * *
consensus_7189#0 TGCAGGGCATC-CCGCTCGACACCAAACCCGAGCTGCCCCTGTTCTACACCGAGATCGAC 593
consensus_7189#1 TGTCGGGCAACGCCACCAGACCGCAGGCC-ATGCGGGCCATCTCGCTGATCGCGAACAAG 443
** ***** * ** * *** ** ** ** * ** * * * ** ** * *
consensus_7189#0 AAGGTCGACCTGTCGGTGGAGGTGTGCGGCGTGCGATTCGAGAATCCGTTCGGGCTCGCG 653
consensus_7189#1 CTACCCGGCTTCCCGATC------TGCGGCATCGGCGGCATCGACTCGGCCGAGGTCGCG 497
** * * ** * ****** * * * * ** ** * *****
consensus_7189#0 T--CTGCCCCTCCGACCACCAGCACCGCCATGATACGGC-GCGCGTTCGAGCAGGGCTGG 710
consensus_7189#1 CTGCAGTTCATCCAGTGCGGTGCGCCGATCCTGCAGATCTGCTCCTCCGTGCAGAACCAG 557
* * * *** ** *** * * ** * * ** **** * *
consensus_7189#0 GGCTTTGCCGTGACGAAGACGTTCGCGCTGGACAAGGACATGGTGACGAACGTGAGCCCG 770
consensus_7189#1 GACTTTACCGTCATCGAGGATTACATACTGGGACTGAAGGCGCTGCTCTATCTG------ 611
* **** **** * ** * * **** * * * ** * **
consensus_7189#0 CGCATCGTGCGGGGCGTGACGGCCGGCCAGCACTACGGTCCGCAGCAGGGCGCCTTCCTC 830
consensus_7189#1 -----CGCGCGAACC----CGCCCCGGAAGCACTGC---CCTGGGATGGCCAAGGTCGCC 659
** *** * ** ** * ****** * ** * ** * ** *
consensus_7189#0 AACATCGAGCTCATCTCGGAGAAGTGCTGCGACTACTGGCTGACGGGCATCCGGGAGCTG 890
consensus_7189#1 ACCAGCGGGCCNAAGCTGCAGAAGGGGCAAAACCGGTCGCT-----CCGTTGCAGGGGCG 714
* ** ** ** * * ***** * ** * *** * * * * *
consensus_7189#0 AAGCGTGACTTCCCCAGCCGCGTGCTGATCGCGAGCATCATGTGCACGTACAGCGAGCCG 950
consensus_7189#1 AGGACGGGCAAGCCCGCGTGCTTGCACTTTCGGGGAGGTACAAGAAGGCACAGCGNGA-G 773
* * * * *** ** *** * * * * * * * ****** * *
consensus_7189#0 GACTGGGTCGAGCTGGCGTCAAGGGCGGAAGCGGCCGGAGCCGACATGCTCGAGCTCAAC 1010
consensus_7189#1 GAGAAGCTTGGCCAAATTGTGGCCTTCCANGCGAC-GGGTCCCACNTGTTGGGG---AAC 829
** * * * * * *** * ** ** ** ** * * * ***
consensus_7189#0 CTGTCCTGCCCGCACGGGATGGGCGAGTCGGGCATGGGACTGGCCTG--CGGTCAAGACC 1068
consensus_7189#1 CCGGNTTTNGCGGGNCGAAAGCACCGGGCACNAATGNGGCAANCGCAGCNGGTAAGGANA 889
* * * ** * * * * * * *** * * * *** * **
consensus_7189#0 CCGAGCTGGTGTACAATATTTCGCGCTGGGTGCGCGGTGCCGTGCGCATACCGTTCTTCG 1128
consensus_7189#1 CCAGAGTTCTGGGCANNANCCAGGGNATGATTTACCCGAGNNTAAGNGAATNTCTCTGGG 949
** * ** ** * * * * * * * * * *** *
consensus_7189#0 TGAAGCTCACGCCCAATATTACCGACATCGTGTCGATCGCGCAGGCGGCCAAGCGCGGTC 1188
consensus_7189#1 CGGGG----------ANATTGCCCGGATCG----GGATTCAAAGGTGG------------ 983
* * * *** ** **** * * *** **
consensus_7189#0 AGGCGGACGGCGTGTCGGCGATCAACACGGTGCAGGGGCTGATGTCGCTCCGGGCGGACG 1248
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 GCAGCCCGTGGCCGGCCGTCGGTGCCGACCGGCGCACCACGTACGGTGGTGTGTCGGGCA 1308
consensus_7189#1 ------------------------------------------------------------
consensus_7189#0 ACGCCACCAGAC 1320
consensus_7189#1 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||