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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1048 fasta sequence
[CCGGTTGATCTTCGTCTGGCTTCAGTTGCTACAGACGCGAATTGCTCGCAATGTAATTGACGTGGCGGGCGTGCGTGCGTGCTTGGTTCAGTGTTCGCATACGAAGAAGTTCCACATTCCAGCACAGGTGGCCACTTTCTCCAAGAAGGTGGTGCTTCCGGCGGTGGTGCCCGGTTAATTTGCAGTGACTGTGTTCGAAATCTCGATCTAATCAGTGTATAAGGAATACAAAAAAGACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTAGCCGTCGAGGGCATGAGCAACACGGCCGGTCGAAAGCTGCGCGAAAAGAAGGTCGCACTCAGTGATGCGCCCGTCGTGCACCAGATTAAGCGGGCCGGTGGCATTGTGCTGCTCGTAAGCAACACGCCCGAACTGTGCCTGTGCTGGGAAACGTACAACCAGTGCACGGGTCTAACGCGCAACCCGTACAACCTGCAGCGTACTGCGGGCGGATCGTCCGGCGGTGAGGCCGCACTGATTGCGGCGGCCGGATCGCTGCTCGGCGTTACGACCGATATAGCCGGCTCTTCGCGCCTACCAGCCATGTTTACTGGTGTGTTTGGCCATAAACCTTCACCGGTACGTGGTGTCACCGTACGGGCACCATCCGTCCTGTGACGATGAGAACTGGGGCAGCTTCTTCACGCCCGGCGCCATG]
[+] EMBL BM610353 [CCGGTTGATCTTCGTCTGGCTTCAGTTGCTACAGACGCGAATTGCTCGCAATGTAATTGACGTGGCGGGCGTGCGTGCGTGCTTGGTTCAGTGTTCGCATACGAAGAAGTTCCACATTCCAGCACAGGTGGCCACTTTCTCCAAGAAGGTGGTGCTTCCGGCGGTGGTGCCCGGTTAATTTGCAGTGACTGTGTTCGAAATCTCGATCTAATCAGTGTATAAGGAATACAAAAAAGACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTAGCCGTCGAGGGCATGAGCAACACGGCCGGTCGAAAG ]
[+] EMBL BM607869 [ ccGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTAGCCGTCGAGGGCATGAGCAACACGGCCGGTCGAAAGCTGCGCGAAAAGAAGGTCGCACTCAGTGATGCGCCCGTCGTGCACCAGATTAAGCGGGCCGGTGGCATTGTGCTGCTCGTAAGCAACACGCCCGAACTGTGCCTGTGCTGGGAAACGTACAACCAGTGCACGGGTCTAACGCGCAACCCGTACAACCTGCAGCGTACTGCGGGCGGATCGTCCGGCGGTGAGGCCGCACTGATTGCGGCGGCCGGATCGCTGCTCGGCGTTACGACCGATATAGCCGGCTCTTCGCGCCTACCAGCCATGTTTACTGGTGTGTTTGGCCATAAACCTTCACCGGTACGTGGTGTCACCGTACGGGCACCATCCGTCCTGTGACGATGAGAACTGGGGCAGCTTCTTCACGCCCGGCGCCATG]
consensusID : consensus_7191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 673 fasta sequence
[CCGCGCATTTGGCTATTAGACTCGTTTCTGTTTGCCGGCATCGTCGTCAGGTCCTCCACAGGAAGCAAGGCTCC--GGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTTTCTGCGGCTCATCTACGCCAAGTGCTACCGTAAGGTGGTCCGAGAATGCAACCA---------ACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTA]
[+] EMBL BM586620 [CCGCGCATTTGGCTATTAGACTCGTTTCTGTTTGCGCGCATCGTCGTCAGGTCCTCCACAGGAAGCAAGGCTCC GGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGATTTTCTGCGGCTCATCTACGCCAAGTGCTACCGTAAGGTGGTCCGAGAATGCAACCA ACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCG ]
[+] EMBL BM648818 [ CCGGCATCGTCGTCAGGTCCTCCACAGGAAGCAAGGCTCCAAGGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTTTCTGCGGCTCATCTACGCCAAGTGCTACCGTAAGGTGGTCCGAGAATGCAACCACTTCCACAGACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAGGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTGGTCCGTGCGTACATCCAGCGGTGCCAGCAGGTCAACCCGCTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCCGCGGAAGAGTTAGCT ]
[+] EMBL BM649198 [ CCGGCATCGTCGTCAGGTCCTCCACAGGAAGCAAGGCTCCAAGGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTTTCTGCGGCTCATCTAC ]
[+] EMBL BM650218 [ ccgGGCTCC GGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTTTCTGCGGCTCATCTACGCCAAGTGCTACCGTAAGGTGGTCCGAGAATGCAACCA ACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGA CCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7191#0 ----------------------------------CCGGTTGATCTTCGTCTGG--CTTCA 24
consensus_7191#1 CCGCGCATTTGGCTATTAGACTCGTTTCTGTTTGCCGGC--ATCGTCGTCAGGTCCTCCA 58
**** *** ***** ** ** **
consensus_7191#0 GTTGCTACAGA----CGCGAATTGCTCGCAATGTAATTGAC-GTGGCGGGCGTGCGTGCG 79
consensus_7191#1 CAGGAAGCAAGGCTCCGGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTC 118
* ** ** *** ** ** * * *** ** **** *
consensus_7191#0 TGCTTGGTTCAGTGTTCGCATACGAAGAA-------GTTCCACATTCCAGCACAGGTGGC 132
consensus_7191#1 CATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGG 178
* * * * * **** * ** *** * ** ** * *
consensus_7191#0 CACTTTCTCCAAGAAGGTGGT-GCTTCCGGCGGTGGTGCCCGGTTAATTTGCAGTGACTG 191
consensus_7191#1 AATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTT-TCTGCGGCTCATC 237
* ** **** ** * * * ** * * * * ** ** * * *** * *
consensus_7191#0 TGTTCGAAATCTCGATCTAATCAGTGTATAAGGAATACAAAAAAGACAGATGAGTTACGC 251
consensus_7191#1 TACGCCAAGTGCTACCGTAA--GGTGGTCCGAGAATGCAACCAA--CAGATGAGTTACGC 293
* * ** * *** *** **** *** ** **************
consensus_7191#0 TATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTC 311
consensus_7191#1 TATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTC 353
************************************************************
consensus_7191#0 GCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCT 371
consensus_7191#1 GCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCT 413
************************************************************
consensus_7191#0 GCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGA 431
consensus_7191#1 GCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGA 473
************************************************************
consensus_7191#0 CGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGT 491
consensus_7191#1 CGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGT 533
************************************************************
consensus_7191#0 CGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAA 551
consensus_7191#1 CGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAA 593
************************************************************
consensus_7191#0 GGGTACGCTCGGACCC-GCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGG 610
consensus_7191#1 GGGTACGCTCGGACCCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGG 653
**************** *******************************************
consensus_7191#0 TTTCGATCAAGGAAAGCTTAGCCGTCGAGGGCATGAGCAACACGGCCGGTCGAAAGCTGC 670
consensus_7191#1 TTTCGATCAAGGAAAGCTTA---------------------------------------- 673
********************
consensus_7191#0 GCGAAAAGAAGGTCGCACTCAGTGATGCGCCCGTCGTGCACCAGATTAAGCGGGCCGGTG 730
consensus_7191#1 ------------------------------------------------------------
consensus_7191#0 GCATTGTGCTGCTCGTAAGCAACACGCCCGAACTGTGCCTGTGCTGGGAAACGTACAACC 790
consensus_7191#1 ------------------------------------------------------------
consensus_7191#0 AGTGCACGGGTCTAACGCGCAACCCGTACAACCTGCAGCGTACTGCGGGCGGATCGTCCG 850
consensus_7191#1 ------------------------------------------------------------
consensus_7191#0 GCGGTGAGGCCGCACTGATTGCGGCGGCCGGATCGCTGCTCGGCGTTACGACCGATATAG 910
consensus_7191#1 ------------------------------------------------------------
consensus_7191#0 CCGGCTCTTCGCGCCTACCAGCCATGTTTACTGGTGTGTTTGGCCATAAACCTTCACCGG 970
consensus_7191#1 ------------------------------------------------------------
consensus_7191#0 TACGTGGTGTCACCGTACGGGCACCATCCGTCCTGTGACGATGAGAACTGGGGCAGCTTC 1030
consensus_7191#1 ------------------------------------------------------------
consensus_7191#0 TTCACGCCCGGCGCCATG 1048
consensus_7191#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||