These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1048 fasta sequence [CCGGTTGATCTTCGTCTGGCTTCAGTTGCTACAGACGCGAATTGCTCGCAATGTAATTGACGTGGCGGGCGTGCGTGCGTGCTTGGTTCAGTGTTCGCATACGAAGAAGTTCCACATTCCAGCACAGGTGGCCACTTTCTCCAAGAAGGTGGTGCTTCCGGCGGTGGTGCCCGGTTAATTTGCAGTGACTGTGTTCGAAATCTCGATCTAATCAGTGTATAAGGAATACAAAAAAGACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTAGCCGTCGAGGGCATGAGCAACACGGCCGGTCGAAAGCTGCGCGAAAAGAAGGTCGCACTCAGTGATGCGCCCGTCGTGCACCAGATTAAGCGGGCCGGTGGCATTGTGCTGCTCGTAAGCAACACGCCCGAACTGTGCCTGTGCTGGGAAACGTACAACCAGTGCACGGGTCTAACGCGCAACCCGTACAACCTGCAGCGTACTGCGGGCGGATCGTCCGGCGGTGAGGCCGCACTGATTGCGGCGGCCGGATCGCTGCTCGGCGTTACGACCGATATAGCCGGCTCTTCGCGCCTACCAGCCATGTTTACTGGTGTGTTTGGCCATAAACCTTCACCGGTACGTGGTGTCACCGTACGGGCACCATCCGTCCTGTGACGATGAGAACTGGGGCAGCTTCTTCACGCCCGGCGCCATG] [+] EMBL BM610353 [CCGGTTGATCTTCGTCTGGCTTCAGTTGCTACAGACGCGAATTGCTCGCAATGTAATTGACGTGGCGGGCGTGCGTGCGTGCTTGGTTCAGTGTTCGCATACGAAGAAGTTCCACATTCCAGCACAGGTGGCCACTTTCTCCAAGAAGGTGGTGCTTCCGGCGGTGGTGCCCGGTTAATTTGCAGTGACTGTGTTCGAAATCTCGATCTAATCAGTGTATAAGGAATACAAAAAAGACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTAGCCGTCGAGGGCATGAGCAACACGGCCGGTCGAAAG ] [+] EMBL BM607869 [ ccGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTAGCCGTCGAGGGCATGAGCAACACGGCCGGTCGAAAGCTGCGCGAAAAGAAGGTCGCACTCAGTGATGCGCCCGTCGTGCACCAGATTAAGCGGGCCGGTGGCATTGTGCTGCTCGTAAGCAACACGCCCGAACTGTGCCTGTGCTGGGAAACGTACAACCAGTGCACGGGTCTAACGCGCAACCCGTACAACCTGCAGCGTACTGCGGGCGGATCGTCCGGCGGTGAGGCCGCACTGATTGCGGCGGCCGGATCGCTGCTCGGCGTTACGACCGATATAGCCGGCTCTTCGCGCCTACCAGCCATGTTTACTGGTGTGTTTGGCCATAAACCTTCACCGGTACGTGGTGTCACCGTACGGGCACCATCCGTCCTGTGACGATGAGAACTGGGGCAGCTTCTTCACGCCCGGCGCCATG] consensusID : consensus_7191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 673 fasta sequence [CCGCGCATTTGGCTATTAGACTCGTTTCTGTTTGCCGGCATCGTCGTCAGGTCCTCCACAGGAAGCAAGGCTCC--GGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTTTCTGCGGCTCATCTACGCCAAGTGCTACCGTAAGGTGGTCCGAGAATGCAACCA---------ACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTA] [+] EMBL BM586620 [CCGCGCATTTGGCTATTAGACTCGTTTCTGTTTGCGCGCATCGTCGTCAGGTCCTCCACAGGAAGCAAGGCTCC GGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGATTTTCTGCGGCTCATCTACGCCAAGTGCTACCGTAAGGTGGTCCGAGAATGCAACCA ACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCG ] [+] EMBL BM648818 [ CCGGCATCGTCGTCAGGTCCTCCACAGGAAGCAAGGCTCCAAGGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTTTCTGCGGCTCATCTACGCCAAGTGCTACCGTAAGGTGGTCCGAGAATGCAACCACTTCCACAGACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAGGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTGGTCCGTGCGTACATCCAGCGGTGCCAGCAGGTCAACCCGCTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGACCCCGCGGAAGAGTTAGCT ] [+] EMBL BM649198 [ CCGGCATCGTCGTCAGGTCCTCCACAGGAAGCAAGGCTCCAAGGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTTTCTGCGGCTCATCTAC ] [+] EMBL BM650218 [ ccgGGCTCC GGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTCCATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGGAATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTTTCTGCGGCTCATCTACGCCAAGTGCTACCGTAAGGTGGTCCGAGAATGCAACCA ACAGATGAGTTACGCTATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTCGCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCTGCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGACGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGTCGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAAGGGTACGCTCGGA CCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGGTTTCGATCAAGGAAAGCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7191#0 ----------------------------------CCGGTTGATCTTCGTCTGG--CTTCA 24 consensus_7191#1 CCGCGCATTTGGCTATTAGACTCGTTTCTGTTTGCCGGC--ATCGTCGTCAGGTCCTCCA 58 **** *** ***** ** ** ** consensus_7191#0 GTTGCTACAGA----CGCGAATTGCTCGCAATGTAATTGAC-GTGGCGGGCGTGCGTGCG 79 consensus_7191#1 CAGGAAGCAAGGCTCCGGGAACAGCGCGGTTGGGAGCAGACAGTATTAAATGTGCATTTC 118 * ** ** *** ** ** * * *** ** **** * consensus_7191#0 TGCTTGGTTCAGTGTTCGCATACGAAGAA-------GTTCCACATTCCAGCACAGGTGGC 132 consensus_7191#1 CATCCCGCACGAAGCGACCGCAGGAAGCATACGCCAGTGTGACAATGCAATTCAAGCCGG 178 * * * * * **** * ** *** * ** ** * * consensus_7191#0 CACTTTCTCCAAGAAGGTGGT-GCTTCCGGCGGTGGTGCCCGGTTAATTTGCAGTGACTG 191 consensus_7191#1 AATCATCCCCAATAATGAGTTCGCCGCTGAAAGCGCTGGTCGAGTT-TCTGCGGCTCATC 237 * ** **** ** * * * ** * * * * ** ** * * *** * * consensus_7191#0 TGTTCGAAATCTCGATCTAATCAGTGTATAAGGAATACAAAAAAGACAGATGAGTTACGC 251 consensus_7191#1 TACGCCAAGTGCTACCGTAA--GGTGGTCCGAGAATGCAACCAA--CAGATGAGTTACGC 293 * * ** * *** *** **** *** ** ************** consensus_7191#0 TATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTC 311 consensus_7191#1 TATACGCAGGCTGCTCCGTGCAGCCATGTGCGTGTTTAGCTGGTTCGTCATGCCCTACTC 353 ************************************************************ consensus_7191#0 GCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCT 371 consensus_7191#1 GCAGTGCGTTAGCGGTCGGATAGAGCGCCGCAAGCTCCCACCAATCGAAGATCCGCTGCT 413 ************************************************************ consensus_7191#0 GCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGA 431 consensus_7191#1 GCTCCTGTCGGCCACCGTGCTTGCCGAGCGCATCCGCAAGCGCGAGATACGCAGCGAGGA 473 ************************************************************ consensus_7191#0 CGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGT 491 consensus_7191#1 CGTAGTCCGTGCGTACATCCAACGGTGCCAGCAGGTCAACCCACTGCTAAACGCCATCGT 533 ************************************************************ consensus_7191#0 CGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAA 551 consensus_7191#1 CGAGGATCGTTTCGAAGCCGCACTGGAAGAGGCCCAGGAAGTCGACCGTCAGCTGGCGAA 593 ************************************************************ consensus_7191#0 GGGTACGCTCGGACCC-GCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGG 610 consensus_7191#1 GGGTACGCTCGGACCCCGCGGAAGAGTTAGCTCGCACCAAACCCCTGCTCGGACTGCCGG 653 **************** ******************************************* consensus_7191#0 TTTCGATCAAGGAAAGCTTAGCCGTCGAGGGCATGAGCAACACGGCCGGTCGAAAGCTGC 670 consensus_7191#1 TTTCGATCAAGGAAAGCTTA---------------------------------------- 673 ******************** consensus_7191#0 GCGAAAAGAAGGTCGCACTCAGTGATGCGCCCGTCGTGCACCAGATTAAGCGGGCCGGTG 730 consensus_7191#1 ------------------------------------------------------------ consensus_7191#0 GCATTGTGCTGCTCGTAAGCAACACGCCCGAACTGTGCCTGTGCTGGGAAACGTACAACC 790 consensus_7191#1 ------------------------------------------------------------ consensus_7191#0 AGTGCACGGGTCTAACGCGCAACCCGTACAACCTGCAGCGTACTGCGGGCGGATCGTCCG 850 consensus_7191#1 ------------------------------------------------------------ consensus_7191#0 GCGGTGAGGCCGCACTGATTGCGGCGGCCGGATCGCTGCTCGGCGTTACGACCGATATAG 910 consensus_7191#1 ------------------------------------------------------------ consensus_7191#0 CCGGCTCTTCGCGCCTACCAGCCATGTTTACTGGTGTGTTTGGCCATAAACCTTCACCGG 970 consensus_7191#1 ------------------------------------------------------------ consensus_7191#0 TACGTGGTGTCACCGTACGGGCACCATCCGTCCTGTGACGATGAGAACTGGGGCAGCTTC 1030 consensus_7191#1 ------------------------------------------------------------ consensus_7191#0 TTCACGCCCGGCGCCATG 1048 consensus_7191#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||