These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [CGGGGGAGATATCTTTCTACACTCACACGATACGGTTGCATTCCGCTGGAGGGAGGGCAGTGGTAATAAAAATCTTCCCCATTCTGGAAATTGCACGAAAAACTACACGATTCGACAGCTTTATCGTTTAGCTGATGTGTTCATAAGCCCAAGATCTATTAGCAACATCATCAATCGACGAGGGAGCACAAATCAACACACAGAGATAAAAAAAGAAACGGACGTTACTCCAGGCGCTATCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAGTATCTGACGCTGCTGCTGAAGAGTACCCGCACGGAGCAGGATGACTCATACCTGCTGCGATACGTTTGCGATCGACGCAAGGGATTAACGTGCCGGACTGGCTCGGTGAACGATGAGGTTTGCGGTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATCAGTACCCGTGGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAGGGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGGCACACTGTTTCTTGCGGCTTCCTGCAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACTGCGAAGATTTGGATGATGAGCTGTCTTGTGCATCTCCGGTGCAAGACTTTGACTACGAG] [+] EMBL BX615176 [CGGGGGAGATATCTTTCTACACTCACACGATACGGTTGCATTCCGCTGGAGGGAGGGCAGTGGTAATAAAAATCTTCCCCATTCTGGAAATTGCACGAAAAACTACACGATTCGACAGCTTTATCGTTTAGCTGATGTGTTCATAAGCCCAAGATCTATTAGCAACATCATCAATCGACGAGGGAGCACAAATCAACACACAGAGATAAAAAAAGAAACGGACGTTACTCCAGGCGCTATCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAGTATCTGACGCTGCTGCTGAAGAGTACCCGCACGGAGCAGGATGACTCATACCTGCTGCGATACGTTTGCGATCGACGCAAGGGATTAACGTGCCGGACTGGCTCGGTGAACGATGAGGTTTGCGGTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATCAGTACCCGTGGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAGGGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGGCACACTGTTTCTTGCGGCTTCCTGCAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACTGCGAAGATTTGGATGATGAGCTGTCTTGTGCATCTCCGGTGCAAGACTTTGACTACGAG] consensusID : consensus_7194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 702 fasta sequence [CCGGTTCCGTTCAGTACAGTTATTCGCTATCGTTTTGTATCTTGCTCAGCCAGCTCTTGCCTTAGAAACGGACGTCACTCCAGGCGCTATCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAG-TATCTGACGCTGCTGCTAAAGAGTACCCGCAC-GGAGCAGGATGACTCATACCTGCTGCGATACGTTTGCGATCGACGCAAGGGGTTAACGTGTCGGACTGGCTCGGTGAACGATGAGGTTTGCGGTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATC-AGTACCCGTGGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAGGGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGG-CACACTGTTTCGTGCGGCTTCCTGCAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACTGCGAAGATTTGGATGATGAGCTGTCTTGTGCATCTCCGGTGCAAGACTTTGACTACGAGCGAATTATCATCCACGAAGGTTACACCGGGAATCACGCGGATCGCGAAAATGATATTGCACTGATCGAATTGAGCGGGTCGGCGAAGTACAACGACTTCGTAAAGCCTATCTGCCTGCCCGAGCCGGGCACACC] [+] EMBL BM632583 [CCGGTTCCGTTCAGTACAGTTATTCGCTATCGTTTTGTATCTTGCTCAGCCAGCTCTTGCCTTAGAAACGGACGTCCCTCCTGGCGCTATCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAG TATCTGACGCTGCTGCTAAAGAGTACCCGCAC GGAGCAGGATGACTCATACCTGCTGCGGTACGTTTGCGATCGACGCAAGGGGTTAACGTGTCGGACTGGCTCGGTGAACGATGAGGTTTGCGGTGTGCAGATGGATAACCGTATTGTCGGTGGACAGCGCACGTCGATCGATC AGTACCCGTGGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAGGGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGG CACACTGTTTCGTGCGGCTTCCTGCAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACTGCGAAGATTTGGATGATGAGCTGTCCTGTGCATCTCCGGTGCAAGACTTTGACTACGAGCGAATCATCATCCACGAAGGCTACACCGGGAATCACGCGGATCGCGAAAATGATATTGCACTGATCGAATTGAGCGGGTC ] [+] EMBL BX619810 [ nTTCAGTACAGTTATTCGCTATCGTTTTGTATCTTGCCCAGCAAGCTCTTACCTTAGAAACGGACGTCACTCCAGGCGCTATCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAG TATCTGACGCTGCTGCTAAAGAGTACCCGCAC GGAGCAGGATGACTCATACCTGCTGCGATACGTTTGCGATCGACGCAAGGGGTTAACGTGTCGGACTGGCTCGGTGAACGATGAGGTTTGCGGTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATCGAGTACCCGTGGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAGGGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGG CACACTGTTTCGTGCGGCTTCCTGCAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACTGCGAAGATTTGGATGATGAa ] [+] EMBL BX614670 [ TTTTGTATCTTGCTCAGCCAGCTCTAGCCTTAGAAACGGACGTTACTCCAGGCGCTATCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAG TATCTGACGCTGCTGCTGAAGAGTACCCGCAC GGAGCAGGATGACTCATACCTGCTTCGATACGTTTGCGATCGACGCAAGGGATTAACGTGCCGGACTGGCTCGGTGAACGATGAGGTTTGCGGTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATC AGTACCCGTGGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAGGGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGG CACACTGTTTCTTGCGGCTTCCTGCAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACTGCGAAGATTTGGATGATGAGCTGTCTTGTGCATCTCCGGTGCAAGACTTTGACTACGAGCGAATTATCATCCACGAAGGTTACACCGGGAATCACGCGGATCGCGAAAATGATATTGCACTCATCGAATTGAGCGGGTCGGCGAAGTACAACGACTTCGTAAAGCCTATCTGCCTGCCCGAGCCGGGCACACC] [+] EMBL BX614373 [ TGTATCTTGCTCAGCCAGCTCTAGCCTTAGAAACGGACGTTACTCCAGGCGCTATCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAG TATCTGACGCTGCTGCTGAAGAGTACCCGCAC GGAGCAGGATGACTCATACCTGCTTCGATACGTTTGCGATCGACGCAAGGGATTAACGTGCCGGACTGGCTCGGTGAACGATGAGGTTTGCGGTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATC AGTACCCGTGGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAGGGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGG CACACTGTTTCTTGCGGCTTCCTGCAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACTGCGAAGATTTGGATGATGAGCTGTCTTGTGCATCTCCGGTGCAAGACTTTGACTACGAGCGAATTATCATCCACGAAGGTTACACCGGGAATCACGCGGATCGCGAAAATGA ] [+] EMBL BX619303 [ nTGCACTTCAAGAACGATCCAAAGNTATCTGAC C GCTGCTAAAGAGTACCCGCACGGGAGCAGGATGACTCATACCTGCTGCGATACGTTTGCGATCGACGCAAGGGGTTAACGTGTCGGACTGGCTCGGTGAACGATGAGGTTTGCGGTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATC AGTACCCGTGGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAGGGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGGCCACACTGTTTCGTGCGGCTTCCTGCAGGTGTTGAGCTACACNNAGTGCGACTGGGCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7194#0 CGGGGGAGATATCTTTCTACACTCACACGATACGGTTGCATTCCGCTGGAGGGAGGGCAG 60 consensus_7194#1 ------------------------------------------------------------ consensus_7194#0 TGGTAATAAAAATCTTCCCCATTCTGGAAATTGCACGAAAAACTACACGATTCGACAGCT 120 consensus_7194#1 ------------------------------------------------------------ consensus_7194#0 TTATCGTTTAGCTGATGTGTTCATAAGCCCAAGATCTATTAGCAACATCATCAATCGACG 180 consensus_7194#1 -----------------------------CCGGTTCCGTT--CAGTACAGTTATTCGCTA 29 * * ** ** ** * * * *** consensus_7194#0 AGGGAGCACAAATCAA-CACACAGAGATAAAAAAAGAAACGGACGTTACTCCAGGCGCTA 239 consensus_7194#1 TCGTTTTGTATCTTGCTCAGCCAGCTCTTGCCTTAGAAACGGACGTCACTCCAGGCGCTA 89 * * * ** *** * ************ ************* consensus_7194#0 TCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAGTATC 299 consensus_7194#1 TCTGTCGGGTGGAAGGAAATTTCGGACGCTGTGTGCACTTCAAGAACGATCCAAAGTATC 149 ************************************************************ consensus_7194#0 TGACGCTGCTGCTGAAGAGTACCCGCACGGAGCAGGATGACTCATACCTGCTGCGATACG 359 consensus_7194#1 TGACGCTGCTGCTAAAGAGTACCCGCACGGAGCAGGATGACTCATACCTGCTGCGATACG 209 ************* ********************************************** consensus_7194#0 TTTGCGATCGACGCAAGGGATTAACGTGCCGGACTGGCTCGGTGAACGATGAGGTTTGCG 419 consensus_7194#1 TTTGCGATCGACGCAAGGGGTTAACGTGTCGGACTGGCTCGGTGAACGATGAGGTTTGCG 269 ******************* ******** ******************************* consensus_7194#0 GTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATCAGTACCCGT 479 consensus_7194#1 GTGTGCAGATGGATAACCGTATCGTCGGTGGACAGCGCACGTCGATCGATCAGTACCCGT 329 ************************************************************ consensus_7194#0 GGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAG 539 consensus_7194#1 GGATGGCGTTGCTGCAGTACATCAACCATCGCAAGGGCACGAAGCGGTTCGCCTGTGGAG 389 ************************************************************ consensus_7194#0 GGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGGCACACTGTTTCTTGCGGCTTCCTG 599 consensus_7194#1 GGGCACTGCTGAACCGGAAGTTTGTCCTCTCGGCGGCACACTGTTTCGTGCGGCTTCCTG 449 *********************************************** ************ consensus_7194#0 CAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACT 659 consensus_7194#1 CAGGTGTTGAGCTACACAAAGTGCGACTGGGCGAATGGGACACCGATTCCGAAATTGACT 509 ************************************************************ consensus_7194#0 GCGAAGATTTGGATGATGAGCTGTCTTGTGCATCTCCGGTGCAAGACTTTGACTACGAG- 718 consensus_7194#1 GCGAAGATTTGGATGATGAGCTGTCTTGTGCATCTCCGGTGCAAGACTTTGACTACGAGC 569 *********************************************************** consensus_7194#0 ------------------------------------------------------------ consensus_7194#1 GAATTATCATCCACGAAGGTTACACCGGGAATCACGCGGATCGCGAAAATGATATTGCAC 629 consensus_7194#0 ------------------------------------------------------------ consensus_7194#1 TGATCGAATTGAGCGGGTCGGCGAAGTACAACGACTTCGTAAAGCCTATCTGCCTGCCCG 689 consensus_7194#0 ------------- consensus_7194#1 AGCCGGGCACACC 702 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||