These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [CCGCCCACGCGTCCGCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCTCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGTGGCGGGCTCGTACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACTTGTGGGGTGAAGTCGGTGAAGACGGGCAACCGTGGTACTGGGCGGCCTGTACCGCCCTGTCCTACTTTCTACATGGTGTCCCGCCTGGGGGGGGCTACGTGTTCATCATCAATCTGATCCCGCTGCACGTGTTCGTGCTGCTGATGATGGGGCGCTACTCGCCCCGCCTCTTCA] [+] EMBL BM595496 [CCGCCCACGCGTCCGCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCTCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGTGGCGGGCTCGTACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACTTGTGGGGTGAAGTCGGTGAAGACGGGCAACCGTGGTACTGGGCGGCCTGTACCGCCCTGTCCTACTTTCTACATGGTGTCCCGCCTGGGGGGGGCTACGTGTTCATCATCAATCTGATCCCGCTGCACGT ] [+] EMBL BM638349 [ ccgGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGTGGCGGGCTCGTACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACCTGT GGGTGAAGTCGGTGAAGACGGGC AGCGT GTACTGGGCGGCCTGTACCGCCCTGTCCTAC TTCTACATGGTGT CCGCCT GGGGTGGCTACGTGTTCATCATCAATCTGATCCCGCTGCACGTGTTCGTGCTGCTGATGATGGGGCGCTACTCGCCCCGCCTCTTCA] consensusID : consensus_7196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence [CCGCCCACGCGTCCGCACGAACAAGATTTGCTGGACTCGGTGGTGGCGTTAATTGTTTCCCCGGTGTTTTCTCCGTTCGGTTCCGTGGACAATCCGCGGTCTGGTGTAAAATGCCTGTGTAACAACCTGCCGCTCGGCAACCTGCATTAGAAGTACTGCAAAACGGGTGCCTCGGTAAACGGGCCAAACGCGGAATCGGTCTTTTTGTCGGCTTTTCGTTCGCTTCTTACATTTTCCTCCTCCCCCCCGGGTTTTGCTGGACACGGGGTGCGTGTGTGTGTGTAGGTGTGCTTAATACGGTGACGTGAAAAAGCAACAATCTTCCGGAAACGGAACCTTCCCAGTTCCCCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCGCACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGG] [+] EMBL BM655937 [CCGCCCACGCGTCCGCACGAACAAGATTTGCTGGACTCGGTGGTGGCGTTAATTGTTTCCCCGGTGTTTTCTCCGTTCGGTTCCGTGGACAATCCGCGGTCTGGTGTAAAATGCCTGTGTAACAACCTGCCGCTCGGCAACCTGCATTAGAAGTACTGCAAAACGGGTGCCTCGGTAAACGGGCCAAACGCGGAATCGGTCTTTTTGTCGGCTTTTCGTTCGCTTCTTACATTTTCCTCCTCCCCCCCGGGTTTTGCTGGACACGGGGTGCGTGTGTGTGTGTAGGTGTGCTTAATACGGTGACGTGAAAAAGCAACAATCTTCCGGAAACGGAACCTTCCCAGTTCCCCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCGCACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGG] [+] EMBL BM611666 [ ccGATTTGCTGGACTCGGTGGTGGCGTTAATTGTTTCCCCGGTGTTTTCTCCGTTCGGTTCCGTGGACAATCCGCGGTCTGGTGTAAAATGCCTGTGTAACAACCTGCCGCTCGGCAACCTGCATTAGAAGTACTGCAACACGGGTGCCTCGGTAAACGGGCCAAACGCGGAATCGGTCTTTTTGTCGGCTTTTCGTTCGCTTCTTACATCTTCCTCCTCCTCCCCGGGTTTTGCTGGACACGGGGTGCGTGTGTGTGTGTAGGTGTGCTTAATACGGTGACGTGAAAAAGCAACAATCTTCCGGAAACGGAACCTTCCCAGTTCCCCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAG ] consensusID : consensus_7196#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CCGCGGACGCGTGGGCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAAGCTGTGGTCGGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACTCAGCCGCCTCGGTGGCGGGCTCG] [+] EMBL BM576290 [CCGCGGACGCGTGGGCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAAGCTGTGGTCGGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACTCAGCCGCCTCGGTGGCGGGCTCG] consensusID : consensus_7196#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [CCGCCCACGCGTCCTGCACGGAACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCTACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGGATCCACTGGCTGCTGCACACGCTCAACATTCCGGAGCACATCCGCGACATCTGCGTGATTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGAGGAGGGCTCGGACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACCTGTGGGTGAA] [+] EMBL BM602240 [CCGCCCACGCGTCCTGCACGGAACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCTACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGGATCCACTGGCTGCTGCACACGCTCAACATTCCGGAGCACATCCGCGACATCTGCGTGATTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGAGGAGGGCTCGGACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACCTGTGGGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7196#0 --------------------------------------------CCGCCCACGCGTCCGC 16 consensus_7196#3 ------------------------------------------------------------ consensus_7196#2 CCGCGGACGCGTGGGCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACC 60 consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 AAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTG 76 consensus_7196#3 ------------------------------------------------------------ consensus_7196#2 AAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTG 120 consensus_7196#1 ------------CCGCCCACGCGTCCGCACGAACAAGATTTGCTGGACTCGGTGGTGGCG 48 consensus_7196#0 TTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGC 136 consensus_7196#3 ------------------------------------------------------------ consensus_7196#2 TTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGC 180 consensus_7196#1 TTAATTGTTTCCCCG-GTGTTTTCTCCGTTCGGTTCCGTGGACAATCCGCGGTCTGGTGT 107 consensus_7196#0 ATCATCCACGAGTT-CGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAA 195 consensus_7196#3 ----------------------CCGCCCACGCGTCCTGC-ACGGAACACATGGTGGAGAA 37 consensus_7196#2 ATCATCCACGAGTT-CGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAA 239 consensus_7196#1 AAAATGCCTGTGTAACAACCTGCCGCTCG-GCAACCTGCATTAGAA---GTACTGCAAAA 163 * * * *** * * * ** * ** consensus_7196#0 TGGGT---TCTACAAGTTCCTCAACTGGTTCGACGAGTCCTCCTGGTACCCGCTGGGCCG 252 consensus_7196#3 TGGGT---TCTACAAGTTCCTCAACTGGTTCTACGAGTCCGCCTGGTACCCGCTGGGCCG 94 consensus_7196#2 TGGGT---TCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGGCCG 296 consensus_7196#1 CGGGTGCCTCGGTAAACGGGCCAAACG-CGGAATCGGTCTTTTTGTCGGCTTTTCGTTCG 222 **** ** ** *** * * *** ** * * * ** consensus_7196#0 CATCGT-CGGCGGCACCGTGTACCCCGGGCT--GATGATCACGTCCGGCG---GCATCCA 306 consensus_7196#3 CATCGT-CGGCGGCACCGTGTACCCCGGGCT--GATGATCACGTCCGGCG---GGATCCA 148 consensus_7196#2 CATCGT-CGGCGGCACCGTGTACCCCGGGCT--GATGATCACGTCCGGCG---GCATCCA 350 consensus_7196#1 CTTCTTACATTTTCCTCCTCCCCCCCGGGTTTTGCTGGACACGGGGTGCGTGTGTGTGTG 282 * ** * * * * * ******* * * ** **** *** * * consensus_7196#0 CTGGC-TGCTGCACACGCTCAACATTCCGGTGCAC--ATCCGCGACATCTG-CGTGTTTC 362 consensus_7196#3 CTGGC-TGCTGCACACGCTCAACATTCCGGAGCAC--ATCCGCGACATCTG-CGTGATTC 204 consensus_7196#2 CTGGC-TGCTGCACACGCTCAACATTCCGGTGCAC--ATCCGCGACATCTGGCGTGTTTC 407 consensus_7196#1 TAGGTGTGCTTAATACGGT-GACGTGAAAAAGCAACAATCTTCCGGAAACGGAACCTTCC 341 ** **** * *** * ** * *** *** * * * * * consensus_7196#0 TGGCGCCGATCT--TCAGCGGTCTCACCG-CCATCTCGACGTACCTGCTGACGAAGGA-G 418 consensus_7196#3 TGGCGCCGATCT--TCAGCGGTCTCACCG-CCATCTCGACGTACCTGCTGACGAAGGA-G 260 consensus_7196#2 TGGCGCCGATCT--TCAGCGGTCTCACCG-CCATCTCGACGTACCTGCTGACGAAGGAAG 464 consensus_7196#1 CAGTTCCCCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCA 401 * ** * * * ** *** * * ** ** * * * * * ** *** consensus_7196#0 CTGTGGT-CGG-CCGGGGCCGGCCTGTTCG--CCGCCAGC-TTCATCGCGATCGTGCCCG 473 consensus_7196#3 CTGTGGT-CGG-CCGGGGCCGGCCTGTTCG--CCGCCAGC-TTCATCGCGATCGTGCCCG 315 consensus_7196#2 CTGTGGT-CGGGCCGGGGCCGGCCTGTTCG--CCGCCAGC-TTCATCGCGATCGTGCCCG 520 consensus_7196#1 CCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGG 461 * * *** ******* * * * * * * *** ** * *** * consensus_7196#0 GCTACATCAGCCGC-TCGGTGGCGGGCT-CGTACGATAA-------CGAGGGCATTGCGA 524 consensus_7196#3 GCTACATCAGCCGC-TCGGAGGAGGGCT-CGGACGATAA-------CGAGGGCATTGCGA 366 consensus_7196#2 GCTAC-TCAGCCGCCTCGGTGGCGGGCT-CG----------------------------- 549 consensus_7196#1 CCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCC 521 ** * ** * ** * ** * consensus_7196#0 TC---TTCGCCCTCCAGTTCACCTACTAC-TTGTGGGGTGAAGTCGGTGAAGACGGGCAA 580 consensus_7196#3 TC---TTCGCCCTCCAGTTCACCTACTAC-CTGTGGG-TGAA------------------ 403 consensus_7196#2 ------------------------------------------------------------ consensus_7196#1 ACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCGCACATGGTGGAGAATGGGTTCT 581 consensus_7196#0 CCGTGGTACTGGGCGGCCTGTACCGCCCTGTCCTACTTTCTACATGGTGTCCCGCCTGGG 640 consensus_7196#3 ------------------------------------------------------------ consensus_7196#2 ------------------------------------------------------------ consensus_7196#1 ACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGG-------------- 627 consensus_7196#0 GGGGGCTACGTGTTCATCATCAATCTGATCCCGCTGCACGTGTTCGTGCTGCTGATGATG 700 consensus_7196#3 ------------------------------------------------------------ consensus_7196#2 ------------------------------------------------------------ consensus_7196#1 ------------------------------------------------------------ consensus_7196#0 GGGCGCTACTCGCCCCGCCTCTTCA 725 consensus_7196#3 ------------------------- consensus_7196#2 ------------------------- consensus_7196#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||