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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 973 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGC--CCGTCGAACGGACACGCGGCCACGGGAGCTTTCGCAGCAACGGACACTGTTGCCACACATTGTTGATTGTGAACGTGCGTCTGTGGGAAAAGGTGCTAATCCCCAGCCCATCGAGATGTAAAGATCGATCTCGTTCTCTAGCAATAGTTTATGAGGAAGAGATCAAACTACTAAACAGTGCTAATCAAAAAAGTGTGTCTAGGAAGTGACTCGCATTTGCACACAAAGATCCTCAAAGCGTGAAGCTTCGAATTACTTTTACGTGTGCGTAAATCTGTGATACGATCAAGTGCCTCCGTTTCTGTGTCTAAACGCCGTCCTTCGATCGACGCTACTGTAGAGTCCTTGACAAGTGTTTGTGTGTTGTTTCGCTACGCTTCAGCGACAAAGCCGTGTGCCGAATTAGTAGTGCCTGCAAAGCGCACAACAACACAAATGCACACTCTGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCGCAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGTGCGAATGGTGGC-TGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGTTGTAGTGTGGTGAATTTCCATTTTCCACTGCTTGCGTGTGTCCGTGTATAATACCTCCGGCATACAATGTCCGGAACGGAAAATCCTGGCTTTGTCACGTCGGACGATGGCGGGCTTCCTGCACAGAATGGTGCAAAACCAACATCGCCATCAGCACAGCTGGAAAAGCTCGAAAAACCACCGGCCGCGGAGTG-AAAAAGTGGGACAAGGGTGTCGAGTTCCTGATGTCCTGCATAGCGCTCTCGGTCGGGCTGGGCAATGTGTGGAAGTTTCCGTCGACCGCGTTCCGCAATGGTGGCGGTGCGTTCGTTATC]
[+] EMBL BM587511 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCG CGAACGGACACGCGGCCACGGGAGCTTTCGCAGCAACGGACACTGTTGCCACACATTGTTGATTGTGAACGTGCGTCTGTGGGAAAAGGTGCTAATCCCCAGCCCATCGAGATGTAAAGATCGATCTCGTTCTCTAGCAATAGTTTATGAGGAAGAGATCAAACTACTAAACAGTGCTAATCAAAAAAGTGTGTCTAGGAAGTGACTCGCATTTGCACACAAAGATCCTCAAAGCGTGAAGCTTCGAATTACTTTTACGTGTGCGTAAATCTGTGATACGATCAAGTGCCTCCGTTTCTGTGTCTAAACGCCGTCCTTCGATCGACGCTACTGTAGAGTCCTTGACAAGTGTTTGTGTGTTGTTTCGCTACGCTTCAGCGACAAAGCCGTGTGCCGAATTAGTAGTGCCTGCAAAGCGCACAACAACACAAATGCACACTCTGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCGCAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGTGCGAATGGTGGC TGCAAAATTTAAATAGTGACTGTGACTAAATAA ]
[+] EMBL BM627351 [ C CGGTCGAACGGACACGCGGCCACGGGAGCTTTCGCAGCAACGGACACTGTTGCCACACATTGTTGATTGTGAACGTGCGTCTGTGGGAAAAAGTGCAAATCCCTAGCCTATCGAGATGTAAAGATCGATCTCGTTCTCTAGCAATAGTTTATGAGGAAGAGATCAAACTACTAAACAGTGCTAATCAAAAAAGTGTGTCTAGGAAGTGACTCGCGTTTGCACACAAAGATCCTCAAAGCGTGAAGCTTCGAATTACTTTTACGTGTGCGTAAATCTGTGATACGATCAAGTGCCTCCGTTTCTGTGTCTAAACGCCGTCCTTCGATCGACGCTACTGTAGAGTCCTTGACAAGTGTTTGTGTGTTGTTTCGCTACGCTTCAGCGACAAAGCCGTGTGCCGAATTAGTAGTGCCTGCAAACCGCACAACAATACAAATGCACACTCTGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCGCAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGTGCGAATGGTGGC TGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGTTGTAGTGTGGTGAATTTCCA TTTCCACTGCTTGCGTGTGTCCGTGTATAATACC ]
[+] EMBL CNS08ZVF [ TCGAACGGACACGCGGCCACGGGAGCTTTCGCAGCAACGGACACTGTTGCCACACATTGTTGATTGTGAACGTGCGTCTGTGGGAAAAGGTGCTAATCCCCAGCCCATCGAGATGTAAAGATCGATCTCGTTCTCTAGCAATAGTTTATGAGGAAGAGATCAAACTACTAAACAGTGCTAATCAAAAAAGTGTGTCTAGGAAGTGACTCGCATTTGCACACAAAGATCCTCAAAGCGTGAAGCTTCGAATTACTTTTACGTGTGCGTAAATCTGTGATACGATCAAGTGCCTCCGTTTCTGTGTCTAAACGCCGTCCTTCGATCGACGCTACTGTAGAGTCCTTGACAAGTGTTTGTGTGTTGTTTCGCTACGCTTCAGCGACAAAGCCGTGTGCCGAATTAGTAGTGCCTGCAAAGCGCACAACAACACAAATGCACACTCTGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCGCAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGTGCGAATGGTGGC TGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGTTGTAGTGTGGTGAATTTCCATTTTCCACTGCTTGCGTGTGTCCGTGTATAATACCTCCGGCATACAATGTCCGGAACGGAAAATCCTGGCTTTGTCACGTCGGACGATGGCGGGCTTCCTGCACAGAATGGTGCAAAACCAACATCGCCATCAGCACAGCTGGAAAAGCTCGAAAAACCACCGGCCGCGGAGTG AAAAAGTGGGACAAGGGTGTCGAGTTCCTGATGTCCTGCATAGCGCTCTCGGTCGGGCTGGGCAATGTGTGGAAGTTTCCGTCGACCGCGTTCCGCA ]
[-] EMBL CNS08ZVG [ AGTGTTTGTGTGTTGTTT TCTACGCTTCAGCGACAAAGCCCTGTGCCGAATTAGTAGTGCCTGCAAAGCGCACAACAACACAAATGCACACTCTGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCGCAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGTGCGAATGGTGGCTTGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGTTGTAGTGTGGTGAATTTCCATTTTCCACTGCTTGCGTGTGTCCGTGTATAATACCTCCGGCATACAATGTCCGGAACGGACAATCCTGGCTTTGTCACGTCGGACGATGGCGGGCTTCCTGCACAGAATGGTGCAAAACCAACATCGCCATCAGCACAGCTGGAAAAGCTCGAAAAACCACCGGCCGCGGAGCGTGAAAAGTGGGACAAGGGTGTCGAGTTCCTGATGTCCTGCATAGCGCTCTCGGTCGGGCTGGGCAATGTGTGGAAGTTTCCGTCGACC CGTTCCGCAATGGTGGCGGTGCGTTCGTTATC]
[+] EMBL CNS090E1 [ TCCCTTTTCTGCCTGCTTAATTGTGCGAATGGTGGC TGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGTTGTAGTGTGGTGAATTTCCATTTTCCACTGCTTGCGTGTGTCCGTGTATAATACCTCCGG ]
consensusID : consensus_7201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence
[CGAGCGTTCGAGTCGAACGGACACGCGGCCACGGGAGCTTTCGCAGCAACGGACACTGTTGCCACACATTGTTGATTGTGAACGTGCGTCTGTGGGAAAAGGTGCTAATCCCCAGCCCATCGAGATGTAAAGATCGATCTCGTTCTCTAGCAATAGTTTATGAGGAAGAGATCAAACTACTAAACAGTGCTAATCAAAAAAGTGTGTCTAGGAAGTGACTCGCATTTGCACACAAAGATCCTCAAAGCGTGAAGCTTCGAATTACTTTTACGTGTGCGTAAATCTGTGATACGATCAAGTGCCTCCGTTTCTGTGTCTAAACGCCGTCCTTCGATCGACGCTACTGTAGAGTCCTTGACAAGTGTTTGTGTGTTAGTTTCGCTACGCTTCAGCGACAAAGCCGTGTGCCCCCTTAGTAGTGCCTGCAAAGCGCACAACAACACAAATGCACACTCTGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCGCAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGTGCGAATGGTGGCTGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGTTGTAGTGTGGTGAATTTCCATTTTCCACTGCTTGCGTGTGTTCGTGTATAATACCTCCGGCATACAATGTCCGGAACGCAACTCCTGGCTTTGTCAAAA]
[+] EMBL CNS08ODO [CGAGCGTTCGAGTCGAACGGACACGCGGCCACGGGAGCTTTCGCAGCAACGGACACTGTTGCCACACATTGTTGATTGTGAACGTGCGTCTGTGGGAAAAGGTGCTAATCCCCAGCCCATCGAGATGTAAAGATCGATCTCGTTCTCTAGCAATAGTTTATGAGGAAGAGATCAAACTACTAAACAGTGCTAATCAAAAAAGTGTGTCTAGGAAGTGACTCGCATTTGCACACAAAGATCCTCAAAGCGTGAAGCTTCGAATTACTTTTACGTGTGCGTAAATCTGTGATACGATCAAGTGCCTCCGTTTCTGTGTCTAAACGCCGTCCTTCGATCGACGCTACTGTAGAGTCCTTGACAAGTGTTTGTGTGTTAGTTTCGCTACGCTTCAGCGACAAAGCCGTGTGCCCCCTTAGTAGTGCCTGCAAAGCGCACAACAACACAAATGCACACTCTGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCGCAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGTGCGAATGGTGGCTGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGTTGTAGTGTGGTGAATTTCCATTTTCCACTGCTTGCGTGTGTTCGTGTATAATACCTCCGGCATACAATGTCCGGAACGCAACTCCTGGCTTTGTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7201#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCCCGTCGAACGGACACGCGGCCACGGG 60
consensus_7201#1 -------------------------CGAGCGTTCGAGTCGAACGGACACGCGGCCACGGG 35
** * * ************************
consensus_7201#0 AGCTTTCGCAGCAACGGACACTGTTGCCACACATTGTTGATTGTGAACGTGCGTCTGTGG 120
consensus_7201#1 AGCTTTCGCAGCAACGGACACTGTTGCCACACATTGTTGATTGTGAACGTGCGTCTGTGG 95
************************************************************
consensus_7201#0 GAAAAGGTGCTAATCCCCAGCCCATCGAGATGTAAAGATCGATCTCGTTCTCTAGCAATA 180
consensus_7201#1 GAAAAGGTGCTAATCCCCAGCCCATCGAGATGTAAAGATCGATCTCGTTCTCTAGCAATA 155
************************************************************
consensus_7201#0 GTTTATGAGGAAGAGATCAAACTACTAAACAGTGCTAATCAAAAAAGTGTGTCTAGGAAG 240
consensus_7201#1 GTTTATGAGGAAGAGATCAAACTACTAAACAGTGCTAATCAAAAAAGTGTGTCTAGGAAG 215
************************************************************
consensus_7201#0 TGACTCGCATTTGCACACAAAGATCCTCAAAGCGTGAAGCTTCGAATTACTTTTACGTGT 300
consensus_7201#1 TGACTCGCATTTGCACACAAAGATCCTCAAAGCGTGAAGCTTCGAATTACTTTTACGTGT 275
************************************************************
consensus_7201#0 GCGTAAATCTGTGATACGATCAAGTGCCTCCGTTTCTGTGTCTAAACGCCGTCCTTCGAT 360
consensus_7201#1 GCGTAAATCTGTGATACGATCAAGTGCCTCCGTTTCTGTGTCTAAACGCCGTCCTTCGAT 335
************************************************************
consensus_7201#0 CGACGCTACTGTAGAGTCCTTGACAAGTGTTTGTGTGTT-GTTTCGCTACGCTTCAGCGA 419
consensus_7201#1 CGACGCTACTGTAGAGTCCTTGACAAGTGTTTGTGTGTTAGTTTCGCTACGCTTCAGCGA 395
*************************************** ********************
consensus_7201#0 CAAAGCCGTGTGCCGAATTAGTAGTGCCTGCAAAGCGCACAACAACACAAATGCACACTC 479
consensus_7201#1 CAAAGCCGTGTGCCCCCTTAGTAGTGCCTGCAAAGCGCACAACAACACAAATGCACACTC 455
************** *******************************************
consensus_7201#0 TGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCG 539
consensus_7201#1 TGCACGATAGTTGATTCAAGTCACCGTTCATTTTTAATAAACAGAATTAAAAAAAAATCG 515
************************************************************
consensus_7201#0 CAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGT 599
consensus_7201#1 CAAAGCAAAACCACACGTCACACGCCAGTTGCGCCTTCCCTTTTCTGCCTGCTTAATTGT 575
************************************************************
consensus_7201#0 GCGAATGGTGGCTGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGT 659
consensus_7201#1 GCGAATGGTGGCTGCAAAATTTAAATAGTGACTGTGACTAAATAACGATCCACACACCGT 635
************************************************************
consensus_7201#0 TGTAGTGTGGTGAATTTCCATTTTCCACTGCTTGCGTGTGTCCGTGTATAATACCTCCGG 719
consensus_7201#1 TGTAGTGTGGTGAATTTCCATTTTCCACTGCTTGCGTGTGTTCGTGTATAATACCTCCGG 695
***************************************** ******************
consensus_7201#0 CATACAATGTCCGGAACGGAAAATCCTGGCTTTGTCACGTCGGACGATGGCGGGCTTCCT 779
consensus_7201#1 CATACAATGTCCGGAACGCAAC-TCCTGGCTTTGTCAAAA-------------------- 734
****************** ** **************
consensus_7201#0 GCACAGAATGGTGCAAAACCAACATCGCCATCAGCACAGCTGGAAAAGCTCGAAAAACCA 839
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 CCGGCCGCGGAGTGAAAAAGTGGGACAAGGGTGTCGAGTTCCTGATGTCCTGCATAGCGC 899
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 TCTCGGTCGGGCTGGGCAATGTGTGGAAGTTTCCGTCGACCGCGTTCCGCAATGGTGGCG 959
consensus_7201#1 ------------------------------------------------------------
consensus_7201#0 GTGCGTTCGTTATC 973
consensus_7201#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||