These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1348 fasta sequence [TCAAGACGGTGTGTGGTACGGTACTGTGGTTAGATTTTATTCCCAGCTAACACCTTCAAAACTCGCCCCCCCTCCCGTGCCATTAACTACTATTTTTGGTTGACAAAAAAACAACACATTCCCCGGACAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGCGTGTGTGTTTAATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCTCTCCCTATTCTAACCCGTGTTCAAAGCGTGTTGTACAGAAGTGCCTGCCTAGAGCGCGTGTGGCCCTTCAGCCCGGCAATTCTAAAATCCAAACACCCCCCTTACCACTGATCATCGCCGACCGACCAACCGATCGACCGCCACGATGCCGTTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCACGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGATTGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAAAGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACACAAAAAGGGCCGCCCGAAGGA-GGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAACGATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTATCGATCGGATCCCTCACATACAGATTGGCGATCACATCGAGAAGCTGGACGGGATCAATGTGGTGGGAAAGCGACACTACGAGGTGG-CCCGCATGCTGAAGGACATTCCCACCGGCTCCACGTTTACCATCCGCCTGGTGGAACCGATGAAGAGTGGCTTCCAGGGCATTGCGCCGCGCAAGGGTACGGCCGGCAGCAAACCGGGCAAGCAGGGATACGGCAGTGGCAAGGAGACGCTGCGGTTTAAGGCCAATGGAAATGCAGCAGAAGCTGGGGGGAAAAACAAGCGGCAGCGGGGGCGCACGGGCAGCCAGTGGAACAACCCTCGTGCAGGCAGGCAGCTAACACCAGCAAAACACGCCCCCCCTCCCGCGCCA] [+] EMBL CNS09JUP [TCAAGACGGTGTGTGGTACGGTACTGTGGTTAGATTTTATTCCCAGCTAACACCTTCAAAACTCGCCCCCCCTCCCGTGCCATTAACTACTATTTTTGGTTGACAAAAAAACAACACATTCCCCGGACAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGCGTGTGTGTTTAATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCTCTCCCTATTCTAACCCGTGTTCAAAGCGTGTTGTACAGAAGTGCCTGCCTAGAGCGCGTGTGGCCCTTCAGCCCGGCAATTCTAAAATCCAAACACCCCCCTTACCACTGATCATCGCCGACCGACCAACCGATCGACCGCCACGATGCCGTTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCACGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGATTGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAAAGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACACAAAAAGGGCCGCCCGAAGGAGGGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAACGATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTATCGATCGGATCCCTCACATACAGATTGGCGATCACAT ] [+] EMBL BM655222 [ ccgCCCCTTACCACCGATCATCGCCGACCGACCAACCGACCGACCGCCACGATGCCGCTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCACGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGATTGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAAAGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACACAAAAAGGGCCGCCCGAAGGA GGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAACGATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTATCGATCGGATCCCTCACATACAGATTGGCGATCACATCGAGAAGCTGGACGGGATCAATGTGGTGGGAAAGCGACACTACGAGGTGGCCCCGCATGCTGAAGGACATTCCCACCGGCTCCACGTTTACC ] [+] EMBL BX620463 [ GGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCACGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGATTGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAAAGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACACAAAAAGGGCCGCCCGAAGGA GGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAACGATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTATCGATCGGATCCCTCACATACAGATTGGCGATCACATCGAGAAGCTGGACGGGATCAATGTGGTGGGAAAGCGACACTACGAGGTGG CCCGCATGCTGAAGGACATTCCCACCGGCTCCACGTTTACCATCCGCCTGGTGGAACCGATGAAGAGTGGCTTCCAGGGCATTGCGCCGCGCAAG ] [+] EMBL BX614692 [ CTGGTGGAACCGATGAAGAGTGGCTCCCAGGGCATTGCGCCGCGCAAGGGTACGGCCGGCAGCAAACCGGGCAAGCAGGGATACGGCAGTGGCAAGGAGACGCTGCGGTTTAAGGCCAATGGAAATGCAGCAGAAGCTGGGGGGAAAAACAAGCGGCAGCGGGGGCGCACGGGCAGCCAGTGGAACAACCCTCGTGCAGGCAGGCAGCTAACACCAGCAAAACACGCCCCCCCTCCCGCGCCA] consensusID : consensus_7202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [CCGCCCACGCGTCCGCAATTTCCTTCATTCCTTTACCCTTTGATCCCCAATTCCCACGCCACTACTGATAATGGGACTTCCCACTGACACAGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGTTGACAAAAAACAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCGTTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAAGTGCCTGTGTAGAGCGCGAGTGGCCTTTCTGCCCGGCAATTCTAAAACCCAAACCCCCCGCCCCCCCTTACCACCGATCATCGCCGACCGACCAACCGACCGACCGCCACGATGCCGCTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCG] [+] EMBL BM619000 [CCGCCCACGCGTCCGCAATTTCCTTCATTCCTTTACCCTTTGATCCCCAATTCCCACGCCACTACTGATAATGGGACTTCCCACTGACACAGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGTTGACAAAAAACAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCGTTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAAGTGCCTGTGTAGAGCGCGAGTGGCCTTTCTGCCCGGCAATTCTAAAACCCAAACCCCCCGCCCCCCCTTACCACCGATCATCGCCGACCGACCAACCGACCGACCGCCACGATGCCGCTGTTCAATAAGAAAAGCACCAAAATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAACTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGGTGGCCACGGCGAGTCGACCG] consensusID : consensus_7202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CCGGGTGCGCACGGTCAGCCAGTGTAACAACCCTCGTGCAGGCAGGCAGGCAGGTAGGCCGGTTTTGCCACCTAACCCCATTCTTCTGCCGTTGCCGTTGTAACGGTTCATAGCGTTCGCCGAAGCGAGAAAGCCTACGTGAGGGAAAGAGATATCGAGAGCGCTCGCGAGAGAGTGAGAGAGAGGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGTTGACAAAAAACAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCGTTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAA] [+] EMBL BM576598 [CCGGGTGCGCACGGTCAGCCAGTGTAACAACCCTCGTGCAGGCAGGCAGGCAGGTAGGCCGGTTTTGCCACCTAACCCCATTCTTCTGCCGTTGCCGTTGTAACGGTTCATAGCGTTCGCCGAAGCGAGAAAGCCTACGTGAGGGAAAGAGATATCGAGAGCGCTCGCGAGAGAGTGAGAGAGAGGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGTTGACAAAAAACAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAAGCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCTAGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGTTCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCGTTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7202#0 ------------------------------------------------------------ consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 CCGGGTGCGCACGGTCAGCCAGTGTAACAACCCTCGTGCAGGCAGGCAGGCAGGTAGGCC 60 consensus_7202#0 ------------------------------------------------------------ consensus_7202#1 ----------------------------CCGCCCACGCGTCCGCAATTTCCTTCATTCCT 32 consensus_7202#2 GGTTTTGCCACCTAACCCCATTCTTCTGCCGTTGCCGTTGTAACGGTTCATAGCGTTCGC 120 consensus_7202#0 ------TCAAGA--CGGTGTGTGGTACGGTACTGTGGTTA--------GATTTTATTCC- 43 consensus_7202#1 TTACCCTTTGAT--CCCCAATTCCCACGCCACTACTGATAATGG----GACTTCCCACTG 86 consensus_7202#2 CGAAGCGAGAAAGCCTACGTGAGGGAAAGAGATATCGAGAGCGCTCGCGAGAGAGTGAGA 180 * * * * * ** consensus_7202#0 ---CAGCTAACACCTTCAAAACTCGCCCCCCCTCCCGTGCCATTAACTACTATTTTTGGT 100 consensus_7202#1 ACACAGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGT 146 consensus_7202#2 GAGAGGCTAACACCTTCAAAACTCGCTCCCCCCTCCGTGCCATTAACTTCTATTTTTGGT 240 ********************* ***** ************** *********** consensus_7202#0 TGACAAAAAAACAACACATTCCCCGGAC--------------------AACTGCATAGAA 140 consensus_7202#1 TGACAAAAAA-CAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAA 205 consensus_7202#2 TGACAAAAAA-CAACACATTCCCCGGACCACCAACCTGGCCGTTGGTCAACTGCATAGAA 299 ********** ***************** ************ consensus_7202#0 GCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCT 200 consensus_7202#1 GCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCT 265 consensus_7202#2 GCAGCATTCTAACTTCTCCTTACCTCTTCAGTCTAATCCTCTCTCTCCCCATACTGGGCT 359 ************************************************************ consensus_7202#0 AGAGACGTGTGTCTGTGTGTGCGTGTGTG--TTTAATAGAGTTGATAGAGTTTTCCGGGT 258 consensus_7202#1 AGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGT 325 consensus_7202#2 AGAGACGTGTGTCTGTGTGTGTGTGTGTGGGTTTGATAGAGTTGATAGAGTTTTCCGGGT 419 ********************* ******* *** ************************* consensus_7202#0 TCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCT 318 consensus_7202#1 TCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCG 385 consensus_7202#2 TCCCGGTGTCCCTTCAACGATACAAAATTCAAATTCCTATCCCCCAAACCCCAACCTCCG 479 *********************************************************** consensus_7202#0 CTCCCTATTCTAACCCGTGTTCAAAGCGTGTTGTACAGAAGTGCCTGCCTAGAGCGCGTG 378 consensus_7202#1 TTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAAGTGCCTGTGTAGAGCGCGAG 445 consensus_7202#2 TTCCCTATTCTAACCCGTGTTCAAAGCGTATTGTACAGAA-------------------- 519 **************************** ********** consensus_7202#0 TGGCCCTTCAGCCCGGCAATTCTAAAATCCAAACACCCC------CCTTACCACTGATCA 432 consensus_7202#1 TGGCCTTTCTGCCCGGCAATTCTAAAACCCAAACCCCCCGCCCCCCCTTACCACCGATCA 505 consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 TCGCCGACCGACCAACCGATCGACCGCCACGATGCCGTTGTTCAATAAGAAAAGCACCAA 492 consensus_7202#1 TCGCCGACCGACCAACCGACCGACCGCCACGATGCCGCTGTTCAATAAGAAAAGCACCAA 565 consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 AATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAA 552 consensus_7202#1 AATATCCAATCCTTCGCCACCGATGACCAAGGATCCGCATGCGTACCACGATAACAACAA 625 consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 CTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGG 612 consensus_7202#1 CTACAAAAACCCTCCGATCCCAACAGCGCCCACGATCCACCACGACAGCATGAGCAACGG 685 consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 TGGCCACGGCGAGTCGACCGTCACCAAGCCGCAGCTGGTGTTCAACTGCCAGTTGGCCCA 672 consensus_7202#1 TGGCCACGGCGAGTCGACCG---------------------------------------- 705 consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 CGGCAGCCCGACCGGCTTCATTACCGGGTTCGCGAGCGTCAAGGAGCTGTACCAGAAGAT 732 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 TGCCGAATGTTACGATTTCCCGATGGATGAGATTCTGTTCTGCACGCTGAACTCGCACAA 792 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 AGTCGACATGAGCAACTTGCTGGGCGGCCAGATCGGGCTGAACGATTTCATCTTCGCACA 852 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 CAAAAAGGGCCGCCCGAAGGAGGTGGAGATCGTCAAGTCGGAGGATGCGCTCGGTCTAAC 912 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 GATCACGGACAACGGTGCGGGTTACGCGTTCATCAAGCGCATCAAAAGTGGCAGCGTTAT 972 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 CGATCGGATCCCTCACATACAGATTGGCGATCACATCGAGAAGCTGGACGGGATCAATGT 1032 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 GGTGGGAAAGCGACACTACGAGGTGGCCCGCATGCTGAAGGACATTCCCACCGGCTCCAC 1092 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 GTTTACCATCCGCCTGGTGGAACCGATGAAGAGTGGCTTCCAGGGCATTGCGCCGCGCAA 1152 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 GGGTACGGCCGGCAGCAAACCGGGCAAGCAGGGATACGGCAGTGGCAAGGAGACGCTGCG 1212 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 GTTTAAGGCCAATGGAAATGCAGCAGAAGCTGGGGGGAAAAACAAGCGGCAGCGGGGGCG 1272 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 CACGGGCAGCCAGTGGAACAACCCTCGTGCAGGCAGGCAGCTAACACCAGCAAAACACGC 1332 consensus_7202#1 ------------------------------------------------------------ consensus_7202#2 ------------------------------------------------------------ consensus_7202#0 CCCCCCTCCCGCGCCA 1348 consensus_7202#1 ---------------- consensus_7202#2 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||